mRNA_Ecto-sp13_S_contig12409.1999.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12409.1999.1 vs. uniprot
Match: A0A6H5KBH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH5_9PHAE) HSP 1 Score: 276 bits (706), Expect = 1.790e-81 Identity = 138/146 (94.52%), Postives = 138/146 (94.52%), Query Frame = 3
Query: 1272 ASEIVCVGTFPGMDLGDTSVLTDEQLMDGYDYTPYQVLFPVLIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFAFGSTEKSVDINRFHHSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 1709
ASE VCVGTFPGMDLGDTSVLTDEQLMDGYD TPYQ FPV IPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFA GSTEKSVDINRFH SLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRR SVPRGPGARASKP
Sbjct: 196 ASEFVCVGTFPGMDLGDTSVLTDEQLMDGYDDTPYQDFFPVFIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKP 341
BLAST of mRNA_Ecto-sp13_S_contig12409.1999.1 vs. uniprot
Match: A0A6H5KPB2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB2_9PHAE) HSP 1 Score: 273 bits (699), Expect = 6.490e-80 Identity = 135/149 (90.60%), Postives = 139/149 (93.29%), Query Frame = 3
Query: 1263 PGAASEIVCVGTFPGMDLGDTSVLTDEQLMDGYDYTPYQVLFPVLIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFAFGSTEKSVDINRFHHSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 1709
P +ASE VCVGTFPG++LGDTSVLTDEQLMDGYD TPYQ FPV IPESDAANVAGVLDSIDGG+DFDLGAAALGPGASPF GSTEKSVDINRFH SLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRR SVPRGPGARASKP
Sbjct: 398 PSSASEFVCVGTFPGIELGDTSVLTDEQLMDGYDDTPYQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKP 546
BLAST of mRNA_Ecto-sp13_S_contig12409.1999.1 vs. uniprot
Match: A0A6H5JQ51_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ51_9PHAE) HSP 1 Score: 265 bits (678), Expect = 8.990e-80 Identity = 131/147 (89.12%), Postives = 137/147 (93.20%), Query Frame = 3
Query: 1269 AASEIVCVGTFPGMDLGDTSVLTDEQLMDGYDYTPYQVLFPVLIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFAFGSTEKSVDINRFHHSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 1709
+ASE VCVGTFPG+DLGDTSVLTD+QLMDGYD TPYQ FP IPE+DAANVAGVLD+IDGGADF LGAAALGPGASPFA GSTEKSVDI+RFH SLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRR SVPRGPGARASKP
Sbjct: 46 SASEFVCVGTFPGVDLGDTSVLTDDQLMDGYDDTPYQYFFPAFIPENDAANVAGVLDNIDGGADFYLGAAALGPGASPFALGSTEKSVDIDRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKP 192
BLAST of mRNA_Ecto-sp13_S_contig12409.1999.1 vs. uniprot
Match: A0A6H5J8D5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D5_9PHAE) HSP 1 Score: 278 bits (712), Expect = 1.420e-78 Identity = 139/146 (95.21%), Postives = 139/146 (95.21%), Query Frame = 3
Query: 1272 ASEIVCVGTFPGMDLGDTSVLTDEQLMDGYDYTPYQVLFPVLIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFAFGSTEKSVDINRFHHSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 1709
ASE VCVGTFPGMDLGDTSVLTDEQLMDGYD TPYQ FPV IPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFA GSTEKSVDINRFH SLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP
Sbjct: 498 ASEFVCVGTFPGMDLGDTSVLTDEQLMDGYDDTPYQDFFPVFIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 643
BLAST of mRNA_Ecto-sp13_S_contig12409.1999.1 vs. uniprot
Match: A0A6H5JPK8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK8_9PHAE) HSP 1 Score: 276 bits (705), Expect = 1.740e-77 Identity = 138/146 (94.52%), Postives = 138/146 (94.52%), Query Frame = 3
Query: 1272 ASEIVCVGTFPGMDLGDTSVLTDEQLMDGYDYTPYQVLFPVLIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFAFGSTEKSVDINRFHHSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 1709
ASE VCVGTFPGMDLGDTSVLTDEQLMDGYD TPYQ FPV IPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFA GSTEKSVDINRFH SLAHACEPLLRETAQQ GIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP
Sbjct: 569 ASEFVCVGTFPGMDLGDTSVLTDEQLMDGYDDTPYQDFFPVFIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQGGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 714
BLAST of mRNA_Ecto-sp13_S_contig12409.1999.1 vs. uniprot
Match: A0A6H5KJH0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH0_9PHAE) HSP 1 Score: 270 bits (691), Expect = 3.550e-77 Identity = 135/146 (92.47%), Postives = 137/146 (93.84%), Query Frame = 3
Query: 1272 ASEIVCVGTFPGMDLGDTSVLTDEQLMDGYDYTPYQVLFPVLIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFAFGSTEKSVDINRFHHSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 1709
ASE VCVGTFPGM LGDTSVLTDEQLMDGYD TP+Q FPV IPESDAANVAGVLDSIDGG+DFDLGAAALGPGASPF GSTEKSVDINRFH SLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP
Sbjct: 174 ASEFVCVGTFPGMYLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 319
BLAST of mRNA_Ecto-sp13_S_contig12409.1999.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE) HSP 1 Score: 273 bits (699), Expect = 1.920e-76 Identity = 136/146 (93.15%), Postives = 137/146 (93.84%), Query Frame = 3
Query: 1272 ASEIVCVGTFPGMDLGDTSVLTDEQLMDGYDYTPYQVLFPVLIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFAFGSTEKSVDINRFHHSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 1709
ASE VCVGTFPGMDLGDTSVLTDEQLMDGYD TPY+ FPV IPESDAAN AGVLDSIDGGADFDLGAAALGPGASPFA GSTEKSVDINRFH SLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRR SVPRGPGARASKP
Sbjct: 196 ASEFVCVGTFPGMDLGDTSVLTDEQLMDGYDDTPYEDFFPVFIPESDAANAAGVLDSIDGGADFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKP 341
BLAST of mRNA_Ecto-sp13_S_contig12409.1999.1 vs. uniprot
Match: A0A6H5JSL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL0_9PHAE) HSP 1 Score: 266 bits (680), Expect = 2.240e-75 Identity = 133/146 (91.10%), Postives = 135/146 (92.47%), Query Frame = 3
Query: 1272 ASEIVCVGTFPGMDLGDTSVLTDEQLMDGYDYTPYQVLFPVLIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFAFGSTEKSVDINRFHHSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 1709
ASE VCVGTFPGMDLGDTSVLTDEQLMDGYD TPYQ FPV IPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFA GSTEKSVDINRFH SLAHACE LLR+TAQQRGIVLTGKLEPCTDCM+AKGRR S RGPGARASKP
Sbjct: 196 ASEFVCVGTFPGMDLGDTSVLTDEQLMDGYDDTPYQDFFPVFIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACESLLRQTAQQRGIVLTGKLEPCTDCMRAKGRRASASRGPGARASKP 341
BLAST of mRNA_Ecto-sp13_S_contig12409.1999.1 vs. uniprot
Match: A0A6H5KFA0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA0_9PHAE) HSP 1 Score: 266 bits (681), Expect = 5.250e-75 Identity = 133/146 (91.10%), Postives = 135/146 (92.47%), Query Frame = 3
Query: 1272 ASEIVCVGTFPGMDLGDTSVLTDEQLMDGYDYTPYQVLFPVLIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFAFGSTEKSVDINRFHHSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 1709
AS CVGTFPGMDLGDTSVLTDEQLMDGYD TP+Q FPV IPESDAANVAGVLDSIDGG+DFDLGAAALGPGASPF GSTEKSVDINRFH SLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRR SVPRGPGARASKP
Sbjct: 243 ASGFECVGTFPGMDLGDTSVLTDEQLMDGYDDTPHQDFFPVFIPESDAANVAGVLDSIDGGSDFDLGAAALGPGASPFTLGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRASVPRGPGARASKP 388
BLAST of mRNA_Ecto-sp13_S_contig12409.1999.1 vs. uniprot
Match: A0A6H5KAL3_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL3_9PHAE) HSP 1 Score: 251 bits (641), Expect = 9.000e-75 Identity = 126/134 (94.03%), Postives = 126/134 (94.03%), Query Frame = 3
Query: 1308 MDLGDTSVLTDEQLMDGYDYTPYQVLFPVLIPESDAANVAGVLDSIDGGADFDLGAAALGPGASPFAFGSTEKSVDINRFHHSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 1709
MDLGDTSVLTDEQLMDGYD TPYQ FPV IPE DAANVAGV DSIDGGADFDLGAAALGPGASPFA GSTEKSVDINRFH SLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP
Sbjct: 1 MDLGDTSVLTDEQLMDGYDDTPYQDFFPVFIPECDAANVAGVFDSIDGGADFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRGIVLTGKLEPCTDCMKAKGRRGSVPRGPGARASKP 134 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12409.1999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12409.1999.1 >prot_Ecto-sp13_S_contig12409.1999.1 ID=prot_Ecto-sp13_S_contig12409.1999.1|Name=mRNA_Ecto-sp13_S_contig12409.1999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=303bp MTPSSPARRPRPRAPPRRAHQTPSRSTSSPTGATPSPTLLRVGATTDPFPback to top mRNA from alignment at Ecto-sp13_S_contig12409:2627..4948+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12409.1999.1 ID=mRNA_Ecto-sp13_S_contig12409.1999.1|Name=mRNA_Ecto-sp13_S_contig12409.1999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2322bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12409:2627..4948+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12409:2627..4948+ >mRNA_Ecto-sp13_S_contig12409.1999.1 ID=mRNA_Ecto-sp13_S_contig12409.1999.1|Name=mRNA_Ecto-sp13_S_contig12409.1999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12409:2627..4948+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |