mRNA_Ecto-sp13_S_contig858.19988.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig858.19988.1
Unique Name	mRNA_Ecto-sp13_S_contig858.19988.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig858.19988.1 vs. uniprot
Match: D7FUF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF7_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 4.070e-93
Identity = 130/137 (94.89%), Postives = 131/137 (95.62%), Query Frame = 1

Query:    1 WQNLAFKQMTYGLYCPPEAICGEMRLDAPQMVDEPGGLDLLQQVEDILARYAAVGIMEHWELSMELFNARVRSPVREWNRFKQKNPGAQSGFRDQVLQWAHGNPAIHRVLGADMLLYSFALSIFKQQTAEALGTNWR 411
            WQNLAFKQMTYGLYCPPEAICGEM+LDAPQMVDEPGGLDLLQQVEDILA YAAVGIMEHW LSMELFNARVRSPVREWNRFKQKNPG  SG RDQVLQWAH NPAIHRVLGADMLLYSFALSIFKQQTAEALGTNWR
Sbjct:    2 WQNLAFKQMTYGLYCPPEAICGEMQLDAPQMVDEPGGLDLLQQVEDILAGYAAVGIMEHWGLSMELFNARVRSPVREWNRFKQKNPGVTSGLRDQVLQWAHENPAIHRVLGADMLLYSFALSIFKQQTAEALGTNWR 138

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BLAST of mRNA_Ecto-sp13_S_contig858.19988.1 vs. uniprot
Match: D7G5K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K0_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 5.200e-71
Identity = 101/136 (74.26%), Postives = 117/136 (86.03%), Query Frame = 1

Query:    1 WQNLAFKQMTYGLYCPPEAICGEMRLDAPQMVDEPGGLDLLQQVEDILARYAAVGIMEHWELSMELFNARVRSPVREWNRFKQKNPGAQSGFRDQVLQWAHGNPAIHRVLGADMLLYSFALSIFKQQTAEALGTNW 408
            WQN AFKQMT+GLYCPP+  C E  +++PQM+DEPG LD+LQQV++ LA Y AVGIMEHW+LSM+LFNARVRSPVREWN FKQ+NPG  SG RD+VLQWAH +PAIHRV+G DMLLY FALSIFKQQT  +LGTNW
Sbjct:  273 WQNKAFKQMTFGLYCPPDTFCDEAEVESPQMLDEPGMLDILQQVQNTLAGYTAVGIMEHWDLSMQLFNARVRSPVREWNMFKQRNPGVMSGLRDEVLQWAHESPAIHRVIGTDMLLYYFALSIFKQQTTASLGTNW 408

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BLAST of mRNA_Ecto-sp13_S_contig858.19988.1 vs. uniprot
Match: A0A6H5K0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M4_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 1.470e-70
Identity = 99/136 (72.79%), Postives = 116/136 (85.29%), Query Frame = 1

Query:    1 WQNLAFKQMTYGLYCPPEAICGEMRLDAPQMVDEPGGLDLLQQVEDILARYAAVGIMEHWELSMELFNARVRSPVREWNRFKQKNPGAQSGFRDQVLQWAHGNPAIHRVLGADMLLYSFALSIFKQQTAEALGTNW 408
            W+N AFKQMT+GLYCPP+  C E  +D+PQM+DEPG LD+LQQV+DILA Y AVGIMEHW+LS++LFNARVRSPVREWN  KQ+NPG  +  RD+VLQWAH +PAIHRV+G DMLLYSF LSIFKQQT  +LGTNW
Sbjct:  118 WRNQAFKQMTFGLYCPPDTFCEEAEVDSPQMLDEPGILDVLQQVQDILAGYTAVGIMEHWDLSIQLFNARVRSPVREWNVSKQRNPGVMTRLRDEVLQWAHKSPAIHRVIGTDMLLYSFGLSIFKQQTTASLGTNW 253

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BLAST of mRNA_Ecto-sp13_S_contig858.19988.1 vs. uniprot
Match: A0A6H5JUF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF0_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 1.370e-67
Identity = 101/158 (63.92%), Postives = 116/158 (73.42%), Query Frame = 1

Query:    1 WQNLAFKQMTYGLYCPPEAIC----------------------GEMRLDAPQMVDEPGGLDLLQQVEDILARYAAVGIMEHWELSMELFNARVRSPVREWNRFKQKNPGAQSGFRDQVLQWAHGNPAIHRVLGADMLLYSFALSIFKQQTAEALGTNW 408
            W+N AFKQMT+GLYCPP+  C                      G   +  PQM+DEPG LD+LQQV+DILA Y AVGIMEHW+LSM+LFNARVRSPVREWN FKQ+NPG  +G RD+VLQWAH +PAIHRV+G DMLLYSF LSIFKQQT  +LGTNW
Sbjct:   69 WRNQAFKQMTFGLYCPPDTFCEVAEVNNVSQCETFVVGVGSLDGLREVGPPQMLDEPGILDVLQQVQDILAGYTAVGIMEHWDLSMQLFNARVRSPVREWNVFKQRNPGVMTGLRDEVLQWAHKSPAIHRVIGTDMLLYSFGLSIFKQQTTASLGTNW 226

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BLAST of mRNA_Ecto-sp13_S_contig858.19988.1 vs. uniprot
Match: A0A6H5L5I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I1_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 7.730e-60
Identity = 88/136 (64.71%), Postives = 107/136 (78.68%), Query Frame = 1

Query:    1 WQNLAFKQMTYGLYCPPEAICGEMRLDAPQMVDEPGGLDLLQQVEDILARYAAVGIMEHWELSMELFNARVRSPVREWNRFKQKNPGAQSGFRDQVLQWAHGNPAIHRVLGADMLLYSFALSIFKQQTAEALGTNW 408
            W+N+A+KQM +G+YCP   IC    +     +DEP GLD+LQ+VEDIL+RY AVGIMEHW+LSM+LFNARVRSPVREWN  +  N G  S  RD+VLQWAH +P +HR++  DMLLYSFALSIFK+QT EALGTNW
Sbjct:  170 WKNMAYKQMAFGMYCPHGLICEATEVRTAPGLDEPHGLDVLQKVEDILSRYTAVGIMEHWDLSMQLFNARVRSPVREWNITQHSNAGLPSELRDEVLQWAHDSPVVHRLIATDMLLYSFALSIFKRQTTEALGTNW 305

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BLAST of mRNA_Ecto-sp13_S_contig858.19988.1 vs. uniprot
Match: A0A6H5JT23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT23_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 6.220e-59
Identity = 86/136 (63.24%), Postives = 108/136 (79.41%), Query Frame = 1

Query:    1 WQNLAFKQMTYGLYCPPEAICGEMRLDAPQMVDEPGGLDLLQQVEDILARYAAVGIMEHWELSMELFNARVRSPVREWNRFKQKNPGAQSGFRDQVLQWAHGNPAIHRVLGADMLLYSFALSIFKQQTAEALGTNW 408
            W+N+A+KQMT+G+YCP   IC    ++    +DEP GLD+LQ+VEDIL+ Y AVGIMEHW+LSM+LFNARVRSPVR+WN   + N G  S  RD+VLQWAH +P IHR++  D+LLYSFALSIFK+QT E+LGTNW
Sbjct:  170 WKNMAYKQMTFGMYCPHGLICEATEVETAPGLDEPHGLDVLQKVEDILSGYTAVGIMEHWDLSMQLFNARVRSPVRDWNMTVRSNAGLPSELRDEVLQWAHDSPVIHRLMATDLLLYSFALSIFKRQTTESLGTNW 305

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BLAST of mRNA_Ecto-sp13_S_contig858.19988.1 vs. uniprot
Match: A0A6H5JT32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT32_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.580e-50
Identity = 78/136 (57.35%), Postives = 101/136 (74.26%), Query Frame = 1

Query:    1 WQNLAFKQMTYGLYCPPEAICGEMRLDAPQMVDEPGGLDLLQQVEDILARYAAVGIMEHWELSMELFNARVRSPVREWNRFKQKNPGAQSGFRDQVLQWAHGNPAIHRVLGADMLLYSFALSIFKQQTAEALGTNW 408
            W+N AF+QMT+GLYCPP A C +    A Q V EPGG  LL+Q+E ILA Y AVGI+E+W+LSM+LFNARV SPV +W   +  N G +SG RD+V +WAH +P IHRV+  DMLLY +++S+FK QT+ +LGT W
Sbjct:  254 WKNKAFRQMTFGLYCPPNAFCEQAEPGAQQAVHEPGGWILLEQIEAILATYTAVGILEYWDLSMQLFNARVTSPVWDWEDMEHSNRGQRSGLRDEVHRWAHMSPEIHRVMATDMLLYDYSVSVFKLQTSASLGTIW 389

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BLAST of mRNA_Ecto-sp13_S_contig858.19988.1 vs. uniprot
Match: A0A6H5K2F9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F9_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 3.430e-41
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 1

Query:  133 EDILARYAAVGIMEHWELSMELFNARVRSPVREWNRFKQKNPGAQSGFRDQVLQWAHGNPAIHRVLGADMLLYSFALSIFKQQTAEALGTNW 408
            +DILA Y AVGI+E+W+LSM+LFNARVRSPVREWN     N G  SG R +VLQWAH +PAIHR LG DMLLYSFALSIFK QT E LGTNW
Sbjct:   12 QDILAGYTAVGIVEYWDLSMQLFNARVRSPVREWNSTLHINAGKPSGLRAEVLQWAHDSPAIHRQLGTDMLLYSFALSIFKDQTTETLGTNW 103

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BLAST of mRNA_Ecto-sp13_S_contig858.19988.1 vs. uniprot
Match: A0A6H5KCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY2_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 7.130e-39
Identity = 65/90 (72.22%), Postives = 72/90 (80.00%), Query Frame = 1

Query:  139 ILARYAAVGIMEHWELSMELFNARVRSPVREWNRFKQKNPGAQSGFRDQVLQWAHGNPAIHRVLGADMLLYSFALSIFKQQTAEALGTNW 408
            ILA Y A+GIMEHW LSM+LFNARVRSPVR+WN     NPG  SG RD+VLQWAH +PAIH  L  DMLLYSFALSIFKQQ  +ALGT+W
Sbjct:   91 ILAGYRAIGIMEHWGLSMQLFNARVRSPVRDWNVSTHVNPGGGSGIRDEVLQWAHQSPAIHDALRTDMLLYSFALSIFKQQATDALGTDW 180

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BLAST of mRNA_Ecto-sp13_S_contig858.19988.1 vs. uniprot
Match: A0A6H5J6T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6T1_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.080e-37
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 1

Query:  169 MEHWELSMELFNARVRSPVREWNRFKQKNPGAQSGFRDQVLQWAHGNPAIHRVLGADMLLYSFALSIFKQQTAEALGTNW 408
            MEHW+LSM+LFNARVRSPVREWN     N G QSG R +VLQWAH +PA+HR++ ADMLLY+FALS+FK QT EALGTNW
Sbjct:    1 MEHWDLSMQLFNARVRSPVREWNSTLHSNAGLQSGVRHEVLQWAHNSPAVHRLVAADMLLYTFALSVFKHQTTEALGTNW 80

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig858.19988.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig858.19988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
D7FUF7_ECTSI	4.070e-93	94.89	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G5K0_ECTSI	5.200e-71	74.26	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K0M4_9PHAE	1.470e-70	72.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUF0_9PHAE	1.370e-67	63.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L5I1_9PHAE	7.730e-60	64.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JT23_9PHAE	6.220e-59	63.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JT32_9PHAE	1.580e-50	57.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2F9_9PHAE	3.430e-41	72.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCY2_9PHAE	7.130e-39	72.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J6T1_9PHAE	2.080e-37	72.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig858	contig	Ecto-sp13_S_contig858:6619..8263 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	414
Hectar predicted targeting category	other localisation
Exons	3
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-03_000360.1
Cds size	390

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464129.115196-CDS-Ecto-sp13_S_contig858:6618..6897	1681464129.115196-CDS-Ecto-sp13_S_contig858:6618..6897	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig858 6619..6897 -
1681464129.1273859-CDS-Ecto-sp13_S_contig858:7589..7649	1681464129.1273859-CDS-Ecto-sp13_S_contig858:7589..7649	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig858 7590..7649 -
1681464129.1389542-CDS-Ecto-sp13_S_contig858:8188..8239	1681464129.1389542-CDS-Ecto-sp13_S_contig858:8188..8239	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig858 8189..8239 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464129.149608-UTR-Ecto-sp13_S_contig858:8239..8263	1681464129.149608-UTR-Ecto-sp13_S_contig858:8239..8263	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig858 8240..8263 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig858.19988.1	prot_Ecto-sp13_S_contig858.19988.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig858 6619..8239 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig858:6619..8263-
coding sequence from alignment at Ecto-sp13_S_contig858:6619..8263-

protein sequence of mRNA_Ecto-sp13_S_contig858.19988.1

>prot_Ecto-sp13_S_contig858.19988.1 ID=prot_Ecto-sp13_S_contig858.19988.1|Name=mRNA_Ecto-sp13_S_contig858.19988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
MTYGLYCPPEAICGEMRLDAPQMVDEPGGLDLLQQVEDILARYAAVGIME
HWELSMELFNARVRSPVREWNRFKQKNPGAQSGFRDQVLQWAHGNPAIHR
VLGADMLLYSFALSIFKQQTAEALGTNWR*

mRNA from alignment at Ecto-sp13_S_contig858:6619..8263-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig858.19988.1 ID=mRNA_Ecto-sp13_S_contig858.19988.1|Name=mRNA_Ecto-sp13_S_contig858.19988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig858:6619..8263- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCAGAATCTGGCATTCAAGCAGATGACGTACGGCTTGTACTGTCCCCC
TGAAGCCATCTGCGGAGAAATGAGGGTGAGAGTGATCTCGTACACATTTT
GCGATTAGCTCTGTGTTCCGACCCTAAATAGGTGAAATGCTACCAAAGTG
TCGAAATTCGACGCGGATGTTGACTTGTTGAGCGAGATTAACGGGGAATC
ACTAAAAAAAAGCACTACGACACAATTTCGGGTCAGTTGTTTCTTCCAGT
CACAAGGCGTTTCGGCTCCCGTACCAGTTTCAGGTGGGGCAATCTGTTGT
ACCGAAGGCGGGGTATGTGCAGGGAATTCGGGGGCGTCACGAGTCCATTT
CGCTTTCACCGATAATTCATCGCTCAGTGCGCCGGATGCTGTCGTGGCGT
GGCGCTCTAAAAACCGTCGGAAAATTTTCGCTATGAAAACCGTTGGCAAT
ACTAGTGCTGCATAACATGAAGAACATTTCAGCCGGTTGGCAAATCGTCC
CAAGACCGTCAAAGACCATCGCTGACCGGCGATAAGTCTCGCATGGCAGT
ATCTCGTAAAAGTCTTATCTTGCCCCTATCTGTATGCGTGTCGCTCATCT
GGGGTTGCCCGCAGCTTGACGCGCCGCAGATGGTGGATGAACCCGGTGGC
CTAGATCTTCTCCAGCAGGTCGAGGTGAGGGTCGCAGATGATCCGCTTTA
TGATTGTGCTGCTCGTCACAGGCATATGTTGGGCGAATACAACAGACTGG
TGTCGTGGAGGAGTCAGTCATTATTATTCCTAGGCCGGAGACGCTCAGGG
GCCCTACGTAGGTCAGGCGTTCGCCCGGCGAAGAGGGAACATGTATTACC
GTGGATATATATATCTGACTCAACTGCATGGAATGAACCGCGCTCAAATG
ATTTTTTTTCGATCTGCCTATTCCTTAGTCTGTAGGCAATGCTGGTGAAT
GTTCGACGTTGAACAGCAGTCGTGTTGGCCCACCCTCAGGCAGGTTTATC
CTGATGTTAACCTAGAATGAAAAGTTTCGCACACGGTGTCGAGTTTTGGC
GGTCCGTTCAAGTTTCAGACAGGTATTTTTTTCCTGACCGTCGCTTGTGT
GTCATCTTTCGGGCACAAGCACAATCTTAATTCTGAATCCATATGTGTTT
GAGGTCATCCGATGGTGGCACTATGGGCTTTTGTAGCGCGTATCATCGAG
TTCGATCGATTAATCATAGGCCGATACCAAGAAGGGAACTAGACGGGGAC
TCGGGTTACACCTACTCGGGTTACACCTAGGCCGGTCTGTCATCTCTGAC
CACGAACAAGGCGTGTCTGGTGAATGTGCTGCTTGTGCCTGATCTGGTTG
TCTCTGACGTTCGCAGGACATCTTGGCTAGATATGCGGCAGTGGGTATTA
TGGAACACTGGGAACTGTCTATGGAGCTCTTCAACGCCCGCGTGCGGTCC
CCCGTGCGTGAGTGGAACAGGTTCAAGCAGAAAAATCCGGGGGCACAGTC
CGGGTTTCGCGACCAGGTGCTTCAATGGGCTCACGGAAACCCGGCAATTC
ACCGCGTGTTAGGAGCAGATATGTTGTTGTACTCCTTTGCGCTGTCCATT
TTCAAGCAACAGACGGCGGAAGCACTCGGTACGAACTGGCGCTAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig858:6619..8263-

>mRNA_Ecto-sp13_S_contig858.19988.1 ID=mRNA_Ecto-sp13_S_contig858.19988.1|Name=mRNA_Ecto-sp13_S_contig858.19988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig858:6619..8263- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTACGGCTTGTACTGTCCCCCTGAAGCCATCTGCGGAGAAATGAG
GCTTGACGCGCCGCAGATGGTGGATGAACCCGGTGGCCTAGATCTTCTCC
AGCAGGTCGAGGACATCTTGGCTAGATATGCGGCAGTGGGTATTATGGAA
CACTGGGAACTGTCTATGGAGCTCTTCAACGCCCGCGTGCGGTCCCCCGT
GCGTGAGTGGAACAGGTTCAAGCAGAAAAATCCGGGGGCACAGTCCGGGT
TTCGCGACCAGGTGCTTCAATGGGCTCACGGAAACCCGGCAATTCACCGC
GTGTTAGGAGCAGATATGTTGTTGTACTCCTTTGCGCTGTCCATTTTCAA
GCAACAGACGGCGGAAGCACTCGGTACGAACTGGCGCTAG