mRNA_Ecto-sp13_S_contig858.19990.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig858.19990.1
Unique NamemRNA_Ecto-sp13_S_contig858.19990.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig858.19990.1 vs. uniprot
Match: A0A6H5JTG7_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 9.600e-9
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:  253 KTFKPDTHAVDVTVALGQHGLGLVLGK 333
            +TFKPDTHAVDVTVALGQHGLGLVLGK
Sbjct:    5 QTFKPDTHAVDVTVALGQHGLGLVLGK 31
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BLAST of mRNA_Ecto-sp13_S_contig858.19990.1 vs. uniprot
Match: D7FUF8_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF8_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 8.160e-8
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:  238 QPALWKTFKPDTHAVDVTVALGQHGLGLVLGK 333
            +P+  +TFKPDTHAVDVTV+LGQHGLGLVLGK
Sbjct:  483 KPSEGQTFKPDTHAVDVTVSLGQHGLGLVLGK 514
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig858.19990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTG7_9PHAE9.600e-996.30PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FUF8_ECTSI8.160e-881.25Similar to Uncharacterized protein conserved in ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig858contigEcto-sp13_S_contig858:17327..20162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size333
Hectar predicted targeting categoryother localisation
Exons3
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464129.0590403-CDS-Ecto-sp13_S_contig858:17326..174041681464129.0590403-CDS-Ecto-sp13_S_contig858:17326..17404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig858 17327..17404 -
1681464129.068762-CDS-Ecto-sp13_S_contig858:18960..191341681464129.068762-CDS-Ecto-sp13_S_contig858:18960..19134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig858 18961..19134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464129.0779793-UTR-Ecto-sp13_S_contig858:19134..191361681464129.0779793-UTR-Ecto-sp13_S_contig858:19134..19136Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig858 19135..19136 -
1681464129.087198-UTR-Ecto-sp13_S_contig858:20083..201621681464129.087198-UTR-Ecto-sp13_S_contig858:20083..20162Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig858 20084..20162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig858.19990.1prot_Ecto-sp13_S_contig858.19990.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig858 17327..19134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig858.19990.1

>prot_Ecto-sp13_S_contig858.19990.1 ID=prot_Ecto-sp13_S_contig858.19990.1|Name=mRNA_Ecto-sp13_S_contig858.19990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MKADSNPHENGAMDMHRRESCATATTHGKDHAIHGGFGVRVSINDATPIA
IGQPALWKTFKPDTHAVDVTVALGQHGLGLVLGK
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mRNA from alignment at Ecto-sp13_S_contig858:17327..20162-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig858.19990.1 ID=mRNA_Ecto-sp13_S_contig858.19990.1|Name=mRNA_Ecto-sp13_S_contig858.19990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2836bp|location=Sequence derived from alignment at Ecto-sp13_S_contig858:17327..20162- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGTCGTTCTTCCGATCCCTGTTCGGCGGCGGGGGTGGTGAAGCAAGCG
GAGACAGTGCCAAGCCCGGCGATGGCGAGGTGTGAATACGTTTTGTTGCT
CGTGTTTCTACGCTAAATATTACTTAAATAACGGCATCAGTGACGACCTT
TACGTTAGCCTTACCTCTATGGTGTATTATGTGTTCCTTGCTTGCTAGTG
TGTTTCGTGTCTACATTTGTCGTCTCTGCTGGCACCCGAATCTCGCTTCG
ATGCATGTTTTCGGCTCCTTGTTCATGAGGACCATTGGAGTTGGAGTTGG
CCTTCTTGTGTCTCATGGTGACGATGGTGGTGACGTCATCGATCACGTTG
TGCACATAAGAGAGACCAAGGCCTTTTCATGGAAGGGGGACCCCCCACAT
GCATAGAGGAGAGGCTCTGTCACAGCAAACATGACTTGCGCATCAACTAC
GGCATGAACAGGAGAGTGAGTACGGCTTAGGCACACTCTGTGGTGTACTG
TTTTCCTCTTGCCAGCGTGTTCCGCATGCAGCTGTCTTTCGCTGGCGCTC
AGTCTCTCGTCGTTGCATGTAGTGGGTTCTCTCTTTATGAGGATCATGGG
GTTTGGGGGTTGGCCTTCGTCTATCTCACGCCGTCGATATAGTTGATGAT
GTGATCAATATCGTCAACGTGAGCCAGACGAAAGCCAACTCCAACTCCAC
TCTGATGCTCCCGCTCTGAAGAAAACTCCAACTCCACTCTGATGCTCCCG
CTCTGAAGAAAGAGCTAACGGGAATTCACCTAGGCAAGACGGAGTGCCAG
CAAAGACGACTACACACAGAATGCACACGGCGATAATACGCCATGGGGTT
TGGCCTTGATCTACTCTCTCAGGCTGATGCCGTACAATAGTCAAGTCACA
TTTGGTGTGAGATACAGATTCTCCTCGATGCATACTTATGGCTCTTTTCG
GCACTAGGATCGAAGTCGAACCCGCCTTCGTCTCACGATGTGATCAATAT
CAAAATCAATATCATCAACGTGACAGAGATGAAGGCTGACTCCAATCCCC
ATGAGAATGGAGCCATGGACATGCATCGACGAGAGTCCTGCGCCACAGCG
ACTACACATGGCAAGGACCACGCAATACACGGTGGATTCGGCGTTCGTGT
CTCGATTAACGATGCGACACCGATCGCAATCGGTCAACCTGCGCTATGGA
AGGTAGATGTAGATCTCGCCGAGAACCTTCCTTGTTCCGGCAGGGTACAG
AAGATGGATCTCACCTTGCGTCCTCCCCGCTATCATTCGTATTGATTCTT
ACGGCATCACCCTCACGGTGGCTGACGGGCCTCTTCGTGAGAAGGGCAAG
GACCTTGAGCCGGCGAGCCCGAGAGTCACCCCACAGATATTTGCGTTAGC
ATAGCACAGTGTAGCATAGTGTAGCATAGCATCTGTGCCAATGATAGCAG
GCAGGTGTCAGTGAGGTGCAGTCGTGGCCTCGATACAAGAGCGTGGTGTG
ACGAAGGTCCTCCTTCCTCTTCTGTCGGAACCACGACGGTTTTATGTACG
TCTATACATCACCCCACCAGAAAAACGAGGCACTTCCACAGCGACTTGGT
TCACCTTATGGCCGACAGCCATCACCTTTTTTTTTTATCAGTTTTCTTCA
CTTCAAATCAGCGCTCACAGCATTGTTGAAGATAAAAACGGGGCATTGGG
GTATAGTCGGCCTGAGCCCTAGTCCGGGCGGTGTGACGGCGATCATAGTC
AATCTCGCTGGTGCATGACATGATTGTTATGCCGCCGAGTGTGTGGCTCC
CTCCGGCAGGGTAAGGGTATTCCACGCTGCGTAACGAGCCAGAGGCCTCT
CTTGGCGAGATCAACTTCGCTCACCGCGCGACAGATTGCAACGGCCATCA
CCCCGTCAACGCGAGAGCGATTAAGGCCGACTCCGCTGCGATGCTCCTTC
CCACGAAGAATGAACCGAGGGCATTCCGACGATGGCCTGCCAGCACGAAC
AGCAACAAAATAGCAGCCCCCACGCCATCGCCGAATAGTGCAGTTGAAAA
AGAGCGCTCTACACCCCGGAATGCACGGAGTTTCGGCAAGTTCCATGTTG
AAATGAGAGGCGTACGTTGATCAGGGTAACGTGGAACGCGTTTCTCACCC
TCCACGCCACAAGCCACAAACAAGTCTTGGGTGTGTACATGATCGCCTTG
GGGTATTTTCCAATACGCGATAACTTCGCCTCCGAGGAACAGCTCAAGAT
TAACTTCGCCCCCCTCTCACCATCTTGAGTGATATGCAGAGACAGGTGGA
GGGTAGGGTACCCACCCCAAAGAACTTGGTGCGTGCAGCTTTCGGCGTTT
CCCAGTACCGTAAACGATACGACGCATGTACCTTAACAGAAGTGCTCGGA
CAGCGATGTGTGGTGACGCTTGCTGGGGTCGATACCCGAATATTGTAAAA
GTGGGGGCATGGACAGACCAACAGCACCAACTTCTCATGCTCTGGGCTAT
TCACCTAATGGCTGCACCCATGACCTAATAATTGCACCCATGATGCAAAG
GAGCCCGATTTTTCGGCGCTCAAGACTTGAACGCTGTGACTCGACCCCCG
TCTTTTCATGCCGACGGTGTGTTTCCGCGATCGCTCTCTTCTTTGCCTCC
TAGAACTGCAGTTTGCTTCTATTGCCGATGCTGTTTCTCCCTTGCCTTTT
TGCTCATGTGATGCCTTTCCTTGTTTGCTGTTTTTGCCCCTGGATGCACG
CATTCCAGACCTTCAAGCCTGACACACACGCCGTGGACGTGACCGTAGCT
CTCGGACAACACGGTCTTGGCCTCGTCCTCGGGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig858:17327..20162-

>mRNA_Ecto-sp13_S_contig858.19990.1 ID=mRNA_Ecto-sp13_S_contig858.19990.1|Name=mRNA_Ecto-sp13_S_contig858.19990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig858:17327..20162- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCTGACTCCAATCCCCATGAGAATGGAGCCATGGACATGCATCG
ACGAGAGTCCTGCGCCACAGCGACTACACATGGCAAGGACCACGCAATAC
ACGGTGGATTCGGCGTTCGTGTCTCGATTAACGATGCGACACCGATCGCA
ATCGGTCAACCTGCGCTATGGAAGACCTTCAAGCCTGACACACACGCCGT
GGACGTGACCGTAGCTCTCGGACAACACGGTCTTGGCCTCGTCCTCGGGA
AG
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