mRNA_Ecto-sp13_S_contig8567.19974.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8567.19974.1
Unique NamemRNA_Ecto-sp13_S_contig8567.19974.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8567.19974.1 vs. uniprot
Match: D8LUC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC3_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 3.670e-57
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    4 CYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 276
            CYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL
Sbjct:   32 CYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 122
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BLAST of mRNA_Ecto-sp13_S_contig8567.19974.1 vs. uniprot
Match: A0A6H5KPX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX9_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.260e-54
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    4 CYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 276
            CYYFLPIKKTISHPFSTGMPK KVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL
Sbjct:  151 CYYFLPIKKTISHPFSTGMPKSKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 241
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BLAST of mRNA_Ecto-sp13_S_contig8567.19974.1 vs. uniprot
Match: A0A836CA80_9STRA (Armet protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA80_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.930e-35
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    4 CYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 276
            CY  + IKK +S PFS G+PKLKVCQRLK  NA++C ++YPIKVDK N+DYN LRVK LK ILA+RG  CDGC+EKSDYV RCK TE++EL
Sbjct:   74 CYNLVTIKKHVSQPFSLGLPKLKVCQRLKKDNADICNMQYPIKVDKGNVDYNTLRVKALKSILAERGARCDGCIEKSDYVKRCKETENMEL 164
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BLAST of mRNA_Ecto-sp13_S_contig8567.19974.1 vs. uniprot
Match: A0A7S0XC71_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XC71_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.120e-32
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    4 CYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDK---ENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 276
            CY F PIKK+IS PF+TGMPK KVCQRL+  N E+CE+KYP+KV+K   E  DYNKL+VKQLK IL++RGV C GC EK ++V +C+ TEHLE+
Sbjct:   91 CYLFEPIKKSISTPFATGMPKAKVCQRLQKDNPEICEVKYPLKVEKKEGEATDYNKLKVKQLKEILSNRGVTCTGCTEKPEFVKKCQETEHLEM 184
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BLAST of mRNA_Ecto-sp13_S_contig8567.19974.1 vs. uniprot
Match: A0A7S2Y4H6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4H6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.650e-32
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    4 CYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLEL 276
            CYY  PIK+ +S PFSTGMPK KVCQRL   N ++C +KYP+KV+K+  DY+KLRVK LK ILA+RGV+C GCLEK DYV RC+ T H++L
Sbjct:   76 CYYLDPIKRAVSQPFSTGMPKNKVCQRLTKDNPDICAVKYPMKVEKDT-DYSKLRVKALKQILAERGVECTGCLEKPDYVKRCEETAHMDL 165
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BLAST of mRNA_Ecto-sp13_S_contig8567.19974.1 vs. uniprot
Match: A0A7S2SV22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV22_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.360e-28
Identity = 57/92 (61.96%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    4 CYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENM--DYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLE 273
            CY   PIKK++SHPFS  MPK KVCQRLK  N ++CEIK+P+KV KE    D +KLRVKQLK IL DRGV+C GC+EK+D+V +   T+HLE
Sbjct:   87 CYNMEPIKKSVSHPFSLRMPKKKVCQRLKKDNPDICEIKFPVKVAKEAKPEDVSKLRVKQLKQILNDRGVECKGCVEKADFVKKVLDTQHLE 178
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BLAST of mRNA_Ecto-sp13_S_contig8567.19974.1 vs. uniprot
Match: A0A4D9D3E5_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3E5_9STRA)

HSP 1 Score: 125 bits (314), Expect = 6.390e-28
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:    4 CYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHL 270
            CY+  PIK+ +S PFSTGMPK KVC RLK  +AE+C IKYP+KVD +  DY KLRVK+LK ILA+RGV+C GCLEK D++ +C+ T HL
Sbjct:   77 CYFLKPIKRDVSQPFSTGMPKAKVCARLKKKSAEICGIKYPVKVDSQT-DYTKLRVKELKAILAERGVECTGCLEKPDFIKKCEETAHL 164
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BLAST of mRNA_Ecto-sp13_S_contig8567.19974.1 vs. uniprot
Match: A0A7R9VPQ9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VPQ9_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.620e-27
Identity = 52/91 (57.14%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    4 CYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDK-ENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHLE 273
            CYY  PIK+ ++ PFSTGMP  +VC+R+  SN E+C +K+PIK +K E  D +KLRVKQLK ILADRGV+C GC+EK +++ + + TEHLE
Sbjct:   73 CYYIDPIKRDVAQPFSTGMPPDRVCKRINQSNPEICGVKFPIKTEKLEPKDLSKLRVKQLKSILADRGVECKGCIEKEEFIKKVQETEHLE 163
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BLAST of mRNA_Ecto-sp13_S_contig8567.19974.1 vs. uniprot
Match: A0A7S3V952_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V952_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.730e-27
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    4 CYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDK-ENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHL 270
            CYY  PIK+ ++HP S GM   KVC+R+  SN E+C +K+P+K +K E  D  KLRVKQLK ILADRGV+C+GCLEK +++A  +ATEHL
Sbjct:   98 CYYIDPIKRDVAHPISLGMSSKKVCERMNKSNPEICTVKFPVKTEKMEKKDIKKLRVKQLKAILADRGVECNGCLEKDEFIAMVQATEHL 187
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BLAST of mRNA_Ecto-sp13_S_contig8567.19974.1 vs. uniprot
Match: A0A7S2HG60_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HG60_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.250e-27
Identity = 54/90 (60.00%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    4 CYYFLPIKKTISHPFSTGMPKLKVCQRLKASNAEVCEIKYPIKVDK-ENMDYNKLRVKQLKGILADRGVDCDGCLEKSDYVARCKATEHL 270
            CYY  PIK+ ++ PFSTGMP  +VC+R+  SN E+C +K+PIK +K E  D +KLRVKQLK IL++RGV+C GCLEK DYV R + TEHL
Sbjct:  136 CYYIDPIKRDVAQPFSTGMPPDRVCKRINQSNPEICGVKFPIKTEKLEKKDISKLRVKQLKAILSERGVECKGCLEKEDYVKRVQETEHL 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8567.19974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUC3_ECTSI3.670e-57100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPX9_9PHAE1.260e-5498.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CA80_9STRA1.930e-3568.13Armet protein n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S0XC71_9STRA2.120e-3263.83Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S2Y4H6_9STRA6.650e-3263.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SV22_9STRA4.360e-2861.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D3E5_9STRA6.390e-2862.92Bifunctional lysine-specific demethylase and histi... [more]
A0A7R9VPQ9_9STRA1.620e-2757.14Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S3V952_9STRA1.730e-2757.78Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S2HG60_9STRA2.250e-2760.00Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8567contigEcto-sp13_S_contig8567:2237..4115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score152.1
Seed ortholog evalue9.9e-35
Seed eggNOG ortholog2880.D8LUC3
Preferred nameMANF
Model size1108
KEGG koko:K13190
Hectar predicted targeting categoryother localisation
GOsGO:0001963,GO:0001976,GO:0001980,GO:0002014,GO:0002576,GO:0003008,GO:0003013,GO:0003018,GO:0003073,GO:0003084,GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005829,GO:0006584,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0008015,GO:0008150,GO:0008152,GO:0008217,GO:0008289,GO:0009712,GO:0009987,GO:0012505,GO:0016043,GO:0016192,GO:0017144,GO:0018958,GO:0019725,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031974,GO:0032501,GO:0032502,GO:0032940,GO:0035150,GO:0035296,GO:0042310,GO:0042417,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045777,GO:0046903,GO:0048468,GO:0048471,GO:0048583,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050880,GO:0051179,GO:0051234,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070050,GO:0071542,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090066,GO:0097164,GO:0097746,GO:0097756,GO:0098916,GO:0099536,GO:0099537,GO:0120036,GO:1901360,GO:1901564,GO:1901615,GO:1905897
Exons2
EggNOG free text desc.neurotrophic factor
EggNOG OGsKOG4154@1,KOG4154@2759
Cds size222
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464127.7213485-UTR-Ecto-sp13_S_contig8567:2236..22931681464127.7213485-UTR-Ecto-sp13_S_contig8567:2236..2293Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8567 2237..2293 +
1681464127.7552001-UTR-Ecto-sp13_S_contig8567:3286..41151681464127.7552001-UTR-Ecto-sp13_S_contig8567:3286..4115Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8567 3287..4115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464127.7333663-CDS-Ecto-sp13_S_contig8567:2293..23601681464127.7333663-CDS-Ecto-sp13_S_contig8567:2293..2360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8567 2294..2360 +
1681464127.7451706-CDS-Ecto-sp13_S_contig8567:3131..32861681464127.7451706-CDS-Ecto-sp13_S_contig8567:3131..3286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8567 3132..3286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8567.19974.1prot_Ecto-sp13_S_contig8567.19974.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8567 2294..3286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8567.19974.1

>prot_Ecto-sp13_S_contig8567.19974.1 ID=prot_Ecto-sp13_S_contig8567.19974.1|Name=mRNA_Ecto-sp13_S_contig8567.19974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MPKLKVCQRLKASNAEVCEIKYPIKVDKENMDYNKLRVKQLKGILADRGV
DCDGCLEKSDYVARCKATEHLEL*
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mRNA from alignment at Ecto-sp13_S_contig8567:2237..4115+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8567.19974.1 ID=mRNA_Ecto-sp13_S_contig8567.19974.1|Name=mRNA_Ecto-sp13_S_contig8567.19974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8567:2237..4115+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGCTACTATTTCTTGCCGATCAAGAAGACGATTTCACACCCCTTCTC
CACGGGTATGCCTAAGTTGAAGGTCTGCCAGCGTCTCAAGGCATCCAACG
CAGAAGTATGCGAGATCAAATACCGTGAGTGCGAGATGGGTCAGGGTAGA
GTTGGGAGTGTACTCGAGAGAACCACAACCAGGTGTTGAGCTAAGGCCTA
CCTGACCGCTCTGCGAGCGCCGGCGTTTTAGTGCGCAATGGATGTTAACC
GCTCTTGCCGTGTACATGTACAGGTCTTGTTTTTTTTGTTCTAATGATGC
TGAGGTCCTCTCCTCAAGTAACGCGAGGATCACGCCTCCTTTTTTCTCAT
GTTGGCTTCATAATCGAGGATGCTGCTCTATTCTGCTGGATGGCGTTCTT
TTGCGGTATCTCAAGAGTAATTGCATCCGTCATTCACGGCCACACGTTGC
CTACATACTGATCTGTGTTTTCAGGAGGGAGGTACTGGCTGTGTGTTGAT
GGAGGACTTAAGTGCAACAACTCCACTGCTCCGTTTCTGATCACGCCCCG
CCTATACAGAGTTTTGTTTTGTTGAGCACATACGACCAAACCTCACTCTA
TCGGCGCCAAACCACGTTTCGTGCCTGTTGCTTTCCTCGACCTCCCCCCC
CCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCTCCCTCCCCCCCCCCG
CGAAAAAACCCACCCCAAACAAACAAACAAACCAAAACAGACANNNNNNN
NNNCACAAACGCCCAAACCCCCCCCTTTCGGCGCCAAAACACGTTTCTTG
CCCTTTTTTTTCCCCCCCCCCCCCCCCCCCCCCCCGGGCGCGCTCGACCA
CGCCCTCTTTGACGCACGCCGTCGAATAAAACGCACCATCAACAGCGATC
AAAGTCGACAAGGAGAACATGGACTACAACAAGCTGCGAGTCAAGCAACT
CAAAGGGATCCTGGCAGACCGGGGGGTGGATTGCGATGGGTGCCTGGAGA
AGTCCGACTACGTCGCGCGCTGCAAGGCCACCGAGCACCTTGAGCTCTAG
CTTCGTTCGTTGTGTTGTTCTTAAACGCGTGTGTGTGAGTTCGGTCATCG
TTTTCCGTTGCAGCAGGGGTTAGTGTTTGGTGGCGGGTGTCCTTGGTCTG
CGTCCGGGACCAGGTGAATGGGAAGAGTCGTCAAATCTTTTGTTCGTGGC
CGCCTGCCTCCTTTTATCAGTGGAATGTACAAGTAAAGGCCGGCTTGACC
CGCCACACTTTGAGTCACGCAGACAGTCTCGATTTTGGTTCCCGCATGAG
AGCAATCGGCGTGTGGGGTGTAAGTTTCACTCCCCCCGAAGCCGTTCGCA
GCCTGAAACGATTTGTCTCTGCGGGAAGTCAAGCGGGATGCGGACGTCCG
TGTGAACCTAGTGTGCGCTCGAGCACTGAAGATTGTGCTTGGACCTTCGT
CCTTGTGTGTAGAGAGCTCAAAACTAGTACAGCCCAGCTATTTGATCTTT
AGCCGGCCCCGCGTACGACATCCCCCCACGCGGGCACCAACAGTGTATGC
TGGTTGGGGTGGGTGAACTCTCGGCATGCGCGATTTGGTGTTCCGCGCCC
AGACATGGTTTCGGTGAGAGTGGGCTTGAAAAATGGATTGCGAACGTGCT
CGTAAATAATCCTCGAAACAAGGAAAGTGTGTTCAACGATTGTTACGACC
ATGTGGGGGGCGGCGTGTGCGTTACCGTGTGGGACAGAGTGAACGAGAGA
CGCATCTACAGCAGGCCGTCAGGTCGTGTGCAGCTATCCATGCTTAATAC
CCCGCTTGAATGGTGTGTCAAACGACACTCAAATGTAAGCTCTCATTCCG
CCAACCGACGACGGCCGATGCAACCTATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8567:2237..4115+

>mRNA_Ecto-sp13_S_contig8567.19974.1 ID=mRNA_Ecto-sp13_S_contig8567.19974.1|Name=mRNA_Ecto-sp13_S_contig8567.19974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8567:2237..4115+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTAAGTTGAAGGTCTGCCAGCGTCTCAAGGCATCCAACGCAGAAGT
ATGCGAGATCAAATACCCGATCAAAGTCGACAAGGAGAACATGGACTACA
ACAAGCTGCGAGTCAAGCAACTCAAAGGGATCCTGGCAGACCGGGGGGTG
GATTGCGATGGGTGCCTGGAGAAGTCCGACTACGTCGCGCGCTGCAAGGC
CACCGAGCACCTTGAGCTCTAG
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