mRNA_Ecto-sp13_S_contig8559.19964.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8559.19964.1
Unique NamemRNA_Ecto-sp13_S_contig8559.19964.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8559.19964.1 vs. uniprot
Match: D7FJZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ1_ECTSI)

HSP 1 Score: 677 bits (1748), Expect = 3.330e-239
Identity = 416/460 (90.43%), Postives = 422/460 (91.74%), Query Frame = 1 
Query:    1 MAAVQKTSQWDTQRHIAFSHVAHLGVDNVLFALRLRAGSLDPAPVNKSVLASSTGDDAEGVAEDPAARGRKNREXXXXXXXXXXXXXXXXXXNAN---EDNLNTAAGLEGSAMSLALGHGAPCKNKSCGRREALEDKLMAKWEQIKAELADKVKRAQKLRRSVEEKEKKRDAAVEEITALKEAEEGEAAGAEEQKKRIQAAESEGRRILEESQRLEVELRKLRVRYQEETQQKLPMPHGSIISEADAWAKAAEVAAXXXXXXXXXXXXXYVPDGRTVSFSTNGGRRRRTLHDEASAISGGGPISKRPSQEHSGRFGRWGTEAREQWSCCLCGDDXXXXXXXXXXG-----DGGRRGRIRGRAGVAGGCEAVPPSLGPGGMTAADDVRLVWGSGXXXXXXVCGSSGSADAGRIRREAWGTGQGGDDAKELWRPMLATSVSGGGG-AAWSLIRHHRRPQTAN 1353
            M AVQKTSQWDT++HIAFSHVAHLGVDNVLFALRLRAGSLDP  VNKSVLASST DDAEG AEDPAARGR+N  XXXXXXXXXXXXXXXXXX      EDNLNTAAGLEGSA+S ALGHGAPCKNKSCGRREALEDKLMAKWEQIK ELADKVKRAQKLRRSVEE+EKKRDAAVEEITALKEAEEGEAAGAEEQKKRIQAAESEGRRILEESQRLEVELRKLRVRYQEETQQKLPMPHGSIISEADAWAKAAEVAAXXXXXXXXXXXXXYVPDG TVSFSTN GRRRRTLHDE SAISGGGP SKRPSQEH GRFGRWGTEAREQWSCCLCGDD   XXXXXXX      DGGRRGRIRGR GVAGGCEAVPP LGPGGMTAADDVRLVWGSG XXXXX CGSSGSA AGRIRREAWGT QGGDD +ELWRPMLATSVSGGGG AAWSLIR HRRPQTAN
Sbjct:    1 MTAVQKTSQWDTKKHIAFSHVAHLGVDNVLFALRLRAGSLDPVAVNKSVLASSTSDDAEGPAEDPAARGRRNXXXXXXXXXXXXXXXXXXXXXXXXXXEDNLNTAAGLEGSAISSALGHGAPCKNKSCGRREALEDKLMAKWEQIKTELADKVKRAQKLRRSVEEREKKRDAAVEEITALKEAEEGEAAGAEEQKKRIQAAESEGRRILEESQRLEVELRKLRVRYQEETQQKLPMPHGSIISEADAWAKAAEVAAXXXXXXXXXXXXXYVPDGLTVSFSTNEGRRRRTLHDEESAISGGGPTSKRPSQEHPGRFGRWGTEAREQWSCCLCGDDSGGXXXXXXXXXXEDVDGGRRGRIRGRVGVAGGCEAVPPRLGPGGMTAADDVRLVWGSGGXXXXXXCGSSGSAGAGRIRREAWGTAQGGDDGRELWRPMLATSVSGGGGGAAWSLIRQHRRPQTAN 460
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BLAST of mRNA_Ecto-sp13_S_contig8559.19964.1 vs. uniprot
Match: A0A6H5K8Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z7_9PHAE)

HSP 1 Score: 504 bits (1297), Expect = 4.730e-171
Identity = 326/463 (70.41%), Postives = 341/463 (73.65%), Query Frame = 1 
Query:    1 MAAVQKTSQWDTQRHIAFSHVAHLGVDNVLFALRLRAGSLDPAPVNKSVLASSTGDDAEGVAEDPAARGRKNREXXXXXXXXXXXXXXXXXXNANEDNLNTAAGLEGSAMSLALGHGAPCKNKSCGRREALEDKLMAKWEQIKAELADKVKRAQKLRRSVEE-----------KEKKRDAAVEEITALKEAEEGEAAGAEEQKKRIQAAESEGRRILEESQRLEVELRKLRVRYQEETQQKLPMPHGSIISEADAWAKAAEVAAXXXXXXXXXXXXXYVPDGRTVSFSTNGGRRRRTLHDEASAISGGGPISKRPSQEHSGRFGRWGTEAREQWSCCLCGDDXXXXXXXXXXGDGGRRGRIRGRAGVAGGCEAVPPSLGPGGMTAADDVRLVWGSGXXXXXXVCGSSGSADAGRIRREAWGTGQGGDDAKELWRPMLATSVSGG-GGAAWSLIRHHRRPQTAN 1353
            MAA+QKTSQWD +RH+AFSHVAHLGVDNVLFAL  R   ++    +K                    R R    XXXXXXXXXXXXXXXXXX  NEDNL+TAAGLEGSA+S ALGHGAPC+NKSCGRREALEDKLMAKWEQIK ELA KVK AQKLRRSV E           KEKKRDA VEEITALKEAEEGE+AG E                     RLEVELRKLRVRYQEETQQKLPMPHGSIISEADAWAKAAEVAA             YVPDG TVSFSTNGGRRRRTLHDE SAI+GGG  SKRPSQEH GRFGRWGTEARE+WSCCLCGD XXXXXXXXXX  G RRG +RGR GV GGCEAVPP LGPGGMTAADDVRLVWG G  XXXX          G  RREAWG  +GGDD +ELWRPMLATSVSGG GGAAWSLIR HRRPQTAN
Sbjct:    1 MAAIQKTSQWDKKRHVAFSHVAHLGVDNVLFALVRRWQFIENVACHKH------------------GRDRXXXXXXXXXXXXXXXXXXXXXXXXNEDNLHTAAGLEGSAISSALGHGAPCRNKSCGRREALEDKLMAKWEQIKTELAAKVKHAQKLRRSVSEWSRARARGGAEKEKKRDATVEEITALKEAEEGESAGVEXXXXXXXXXXXXXXXXXXXXXRLEVELRKLRVRYQEETQQKLPMPHGSIISEADAWAKAAEVAAAALSDEDEEPLPPYVPDGLTVSFSTNGGRRRRTLHDEESAITGGGQTSKRPSQEHPGRFGRWGTEARERWSCCLCGDXXXXXXXXXXXXXG-RRGIVRGRVGVVGGCEAVPPRLGPGGMTAADDVRLVWGRGGDXXXXXXXXXXXXXXGGTRREAWGAARGGDDGRELWRPMLATSVSGGSGGAAWSLIRQHRRPQTAN 444
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8559.19964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJZ1_ECTSI3.330e-23990.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8Z7_9PHAE4.730e-17170.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8559contigEcto-sp13_S_contig8559:1..3717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1353
Hectar predicted targeting categoryother localisation
Exons5
Cds size1353
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464126.4100103-CDS-Ecto-sp13_S_contig8559:0..6811681464126.4100103-CDS-Ecto-sp13_S_contig8559:0..681Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8559 1..681 -
1681464126.4351292-CDS-Ecto-sp13_S_contig8559:1093..12881681464126.4351292-CDS-Ecto-sp13_S_contig8559:1093..1288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8559 1094..1288 -
1681464126.4477942-CDS-Ecto-sp13_S_contig8559:1740..19071681464126.4477942-CDS-Ecto-sp13_S_contig8559:1740..1907Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8559 1741..1907 -
1681464126.4597464-CDS-Ecto-sp13_S_contig8559:2566..27771681464126.4597464-CDS-Ecto-sp13_S_contig8559:2566..2777Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8559 2567..2777 -
1681464126.47148-CDS-Ecto-sp13_S_contig8559:3618..37171681464126.47148-CDS-Ecto-sp13_S_contig8559:3618..3717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8559 3619..3717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8559.19964.1prot_Ecto-sp13_S_contig8559.19964.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8559 1..3717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8559.19964.1

>prot_Ecto-sp13_S_contig8559.19964.1 ID=prot_Ecto-sp13_S_contig8559.19964.1|Name=mRNA_Ecto-sp13_S_contig8559.19964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=451bp
MAAVQKTSQWDTQRHIAFSHVAHLGVDNVLFALRLRAGSLDPAPVNKSVL
ASSTGDDAEGVAEDPAARGRKNRERERAKRDARRKGAAAAVANANEDNLN
TAAGLEGSAMSLALGHGAPCKNKSCGRREALEDKLMAKWEQIKAELADKV
KRAQKLRRSVEEKEKKRDAAVEEITALKEAEEGEAAGAEEQKKRIQAAES
EGRRILEESQRLEVELRKLRVRYQEETQQKLPMPHGSIISEADAWAKAAE
VAAAALSDEDEEPPPPYVPDGRTVSFSTNGGRRRRTLHDEASAISGGGPI
SKRPSQEHSGRFGRWGTEAREQWSCCLCGDDSGGGGGGDEDGDGGRRGRI
RGRAGVAGGCEAVPPSLGPGGMTAADDVRLVWGSGGGGGGGVCGSSGSAD
AGRIRREAWGTGQGGDDAKELWRPMLATSVSGGGGAAWSLIRHHRRPQTA
N
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mRNA from alignment at Ecto-sp13_S_contig8559:1..3717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8559.19964.1 ID=mRNA_Ecto-sp13_S_contig8559.19964.1|Name=mRNA_Ecto-sp13_S_contig8559.19964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8559:1..3717- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGCCGTCCAGAAAACATCGCAATGGGACACACAGAGGCACATCGC
CTTCAGCCACGTCGCGCACCTGGGCGTTGATAACGTGCTCTTCGCCCTGG
TGAGAAGGTGGCAAGTCATATTGAATGTAGCATGTCACAAACGTGGTGAG
AAACTTGCAACCCCGCTCTGCGTTTTGACATGCGTGTGCCGCGTTTGTAG
GTCATGTTGGATGCTACAGACTTGCATCCATAATTCTTGACGTCTTCTAT
GGATGGGTGAAGGTGTTTGTCCGTGCAGCACCACAAGTATTCGGTGTAGG
CTCGCGAGCGCAAGGACGATGACGAGGATCAATGACAAAGCGGTTGGTCA
TTCCTAACGTCGTGAATGAAAAGGATGCTGTAAGCCTCCTCTTTTGGCAA
GATATTATCCAAACGAGTTTGTTCCCAACGTTGTAGTCTATGTCCAAACT
GCCCAAGACTTGCTGGGACTGGCTTCGACCACATGAGCGCGTGTAAAACT
CTACCTTTGCCGTGTTTGCTATGAACAAATGAACTTTATTATATGGGCAT
AGAAAAGGACCAATACCTAGAGAAGAACACCAGAAGACCCTTCGAACGAT
AGTACAGGCACCGTGATTGTAGCGATTCAGCATGGACAAGAACTCAAGCA
CGGATGTCCTGCCTCTCGTTCGTGCTTTCGTAATACGAGACGAAGCGGAT
AATCTCAACTCTAAGAAGGTTAACTTACTCTTACTCTGAGCATGTTGGCG
CGTGGGGTGGCGACGGGGGTTGCATGCAGCGATGAGCGAAACCAGAATAG
AAACCAAAAGGGAAAACGAGACAAAAAAGCGGACAAACAGACAGACATGA
GCGAGTTCGAACACAGAATCGTTCCAATCGCCATCATCGTACATGCGAAC
AAACGAACACGGAAATATAACGTCTCCTGTGACATTGCAGAGGCTGCGAG
CGGGATCGTTGGACCCAGCGCCAGTCAACAAGTCAGTCCTTGCGTCTTCG
ACGGGCGACGACGCCGAAGGAGTAGCAGAAGACCCCGCCGCTCGCGGGAG
AAAGAACAGGGAGAGGGAGAGGGCAAAGCGCGACGCTAGGCGCAAAGGAG
CGGCGGCGGCAGTTGCAAATGCGAATGAGGACAACCTTAATACCGCTGCA
GGTACATCGGGAGATGAGAGGCTGGCGGGGTGGGGGGGTGTAGTTGTTCG
TGGGGTCGCTTTGTGTCAAGTGCTCAATCAAAAACGGCCTTAGGAGACGA
AAGAGTGGATGGAAGAACCATATTCATTCCTCAGGCCCTTGTGTGTTTTC
GAATGCTGGTTGTTGTTGTTGTGGTTATACTCTTCTTGTCTTGATATTCG
CAAAAGACGTTAATATCTAATGTGTCTCATCTACCCGTGCTATCCACTGT
GTTTGTCTTGTCGCTTGTCGTTTGCGCAAGAAACCTTTACTGACGCTAGT
CGTATTGGTGGTTGTAATCCTCATCATTTCCCTCAGGGCGAGAGCACACC
ACGGTTGCCGCAAACTTGCCCCTCGATCGCAACAACAACGTTGTACTATT
CGTGCAACAGCCGGTGGCAAAAAAAGGAGCGGGTCCTTTTACACCAAGTC
ACCAGATGCTGTAGGCTGTGTCGAGGCGCTGTATCCACGAGCAACCATGA
ACACGCCAAAATCATTATCCCTGTCCTTGTCGACGACGCGCGACAAGGCA
GACGCCCGTGCGGCTTTGAATAAAATGAAACCAAACCCTGTCCATGCCAA
GCGCATTATAATCATTGTCCTCGCGTGTTGTTTGTACCAACCTCCCCTCT
TTCCGTGCAGGATTGGAGGGTTCCGCCATGTCCTTGGCCCTTGGGCATGG
CGCCCCGTGCAAGAACAAGTCCTGCGGGCGTCGAGAGGCCCTCGAGGATA
AACTCATGGCCAAATGGGAGCAGATCAAGGCCGAACTGGCGGACAAAGTC
AAGCGCGCGCAGAAGCTAAGGCGGTCGGTGAGTGAGTGGAGTAGGGCGAG
GGTAAGGGGGGGGTGCAGGTAGATGCTACGGGGACACGCAGAGGCGCGGG
GGGGGGTCACGTTATTGAACTCGGAAAGGCAAGCGTCAGTCGATAGCAAT
GGTGTTTTCACCATAATAACGAAGAGCTTTGTTCCTGACAGAGTAGCTGA
CTGGTCGCAAGGCCCTGGTGGCTTCATGTTGACCGCTGCGAAGCCAAAAC
CGTTGTTCAAGAGGCAAGAAGATTTTTACGAAGCATCGCAACCAAAATGC
TCAAACGCGCCTTCAACGCTTCAAGAAATCGACCCTGAAGAACAGGTACT
CCCTTAAGGATCCTACAAAAACAACTATCTGATCGTTGTTGCGCTGTAGC
GTTACCTCATACGCCCGTGCCTGCACTGTCTTGAAGCACGCATACCAAAT
CACCACGCACATATCATATCATGTCTAAGGTTGAAGAGAAGGAGAAGAAG
AGAGATGCCGCCGTCGAAGAAATCACCGCTCTTAAGGAAGCAGAGGAGGG
GGAGGCCGCGGGCGCGGAGGAGCAGAAGAAGCGCATACAAGCTGCGGAAT
CAGAAGGACGAAGGATTCTAGAGGAAAGCCAGCGGTTGGAGGTAGAACTC
CGGAAACTCAGGGTGCGGTACCAGGTGAGCAGGGGAAGGAGGGCGATGGC
GTCGCTCTTGTTTGTCGAGACACCTATCGCTGCTACTACGGGTTCTTGAG
ATGATTACGACGTAAAGAAGGTGTTATCCGTACAGTACTGCTTGTTGACT
CGACAGGCAGACGAGACAGAGGTCTACGGGGACGCCATACACAGGGGGAC
GGGTTTTTCAATAGGTTGTGGAGGGATTCATCGACAGCTATCCACGAGGA
CACCAGATTGAAAAATCATCCAACAATTGATGCCCATGACTGATGGCAAC
GAAAATCTCTCGTCGGCAGCCTAAGTCTATTTTCGCGTTTGTTCGCAGCA
TCCATCCGCCATCTATTGTCTAGGGGGTGCATAGAGTATTCGCCCATCCC
CTCCCTCCCCCCCGCGATCGTGCTACTGCTCCGCAGGAAGAAACCCAGCA
GAAGCTACCGATGCCGCACGGGTCAATTATCAGCGAGGCCGACGCGTGGG
CAAAGGCCGCGGAGGTGGCAGCGGCCGCGCTCTCCGACGAGGACGAGGAG
CCTCCGCCGCCATACGTGCCCGACGGCCGAACCGTGTCCTTCTCCACCAA
TGGGGGTCGCCGCCGCCGTACGTTGCACGACGAGGCGAGTGCTATCTCCG
GAGGGGGGCCTATTAGTAAGCGGCCTTCTCAGGAACACTCCGGCCGCTTC
GGCCGCTGGGGAACCGAGGCCCGAGAGCAGTGGTCCTGTTGCCTGTGCGG
CGATGACTCCGGCGGCGGCGGCGGCGGCGACGAAGACGGCGACGGCGGTA
GGCGTGGCAGAATACGGGGCCGCGCCGGCGTGGCCGGCGGTTGCGAAGCA
GTGCCGCCGAGTCTCGGCCCCGGAGGAATGACCGCCGCAGACGACGTCCG
ACTGGTGTGGGGTAGCGGCGGCGGCGGCGGCGGCGGTGTTTGCGGTAGTA
GTGGTAGCGCTGACGCCGGTAGGATTCGACGCGAGGCTTGGGGGACGGGG
CAGGGCGGCGACGACGCAAAGGAGTTGTGGAGACCGATGCTCGCGACGAG
CGTGAGCGGAGGCGGAGGCGCGGCGTGGAGCCTCATCCGCCATCACCGCC
GGCCGCAGACCGCGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8559:1..3717-

>mRNA_Ecto-sp13_S_contig8559.19964.1 ID=mRNA_Ecto-sp13_S_contig8559.19964.1|Name=mRNA_Ecto-sp13_S_contig8559.19964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8559:1..3717- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGCCGTCCAGAAAACATCGCAATGGGACACACAGAGGCACATCGC
CTTCAGCCACGTCGCGCACCTGGGCGTTGATAACGTGCTCTTCGCCCTGA
GGCTGCGAGCGGGATCGTTGGACCCAGCGCCAGTCAACAAGTCAGTCCTT
GCGTCTTCGACGGGCGACGACGCCGAAGGAGTAGCAGAAGACCCCGCCGC
TCGCGGGAGAAAGAACAGGGAGAGGGAGAGGGCAAAGCGCGACGCTAGGC
GCAAAGGAGCGGCGGCGGCAGTTGCAAATGCGAATGAGGACAACCTTAAT
ACCGCTGCAGGATTGGAGGGTTCCGCCATGTCCTTGGCCCTTGGGCATGG
CGCCCCGTGCAAGAACAAGTCCTGCGGGCGTCGAGAGGCCCTCGAGGATA
AACTCATGGCCAAATGGGAGCAGATCAAGGCCGAACTGGCGGACAAAGTC
AAGCGCGCGCAGAAGCTAAGGCGGTCGGTTGAAGAGAAGGAGAAGAAGAG
AGATGCCGCCGTCGAAGAAATCACCGCTCTTAAGGAAGCAGAGGAGGGGG
AGGCCGCGGGCGCGGAGGAGCAGAAGAAGCGCATACAAGCTGCGGAATCA
GAAGGACGAAGGATTCTAGAGGAAAGCCAGCGGTTGGAGGTAGAACTCCG
GAAACTCAGGGTGCGGTACCAGGAAGAAACCCAGCAGAAGCTACCGATGC
CGCACGGGTCAATTATCAGCGAGGCCGACGCGTGGGCAAAGGCCGCGGAG
GTGGCAGCGGCCGCGCTCTCCGACGAGGACGAGGAGCCTCCGCCGCCATA
CGTGCCCGACGGCCGAACCGTGTCCTTCTCCACCAATGGGGGTCGCCGCC
GCCGTACGTTGCACGACGAGGCGAGTGCTATCTCCGGAGGGGGGCCTATT
AGTAAGCGGCCTTCTCAGGAACACTCCGGCCGCTTCGGCCGCTGGGGAAC
CGAGGCCCGAGAGCAGTGGTCCTGTTGCCTGTGCGGCGATGACTCCGGCG
GCGGCGGCGGCGGCGACGAAGACGGCGACGGCGGTAGGCGTGGCAGAATA
CGGGGCCGCGCCGGCGTGGCCGGCGGTTGCGAAGCAGTGCCGCCGAGTCT
CGGCCCCGGAGGAATGACCGCCGCAGACGACGTCCGACTGGTGTGGGGTA
GCGGCGGCGGCGGCGGCGGCGGTGTTTGCGGTAGTAGTGGTAGCGCTGAC
GCCGGTAGGATTCGACGCGAGGCTTGGGGGACGGGGCAGGGCGGCGACGA
CGCAAAGGAGTTGTGGAGACCGATGCTCGCGACGAGCGTGAGCGGAGGCG
GAGGCGCGGCGTGGAGCCTCATCCGCCATCACCGCCGGCCGCAGACCGCG
AAC
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