mRNA_Ecto-sp13_S_contig12405.1996.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12405.1996.1
Unique NamemRNA_Ecto-sp13_S_contig12405.1996.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12405.1996.1 vs. uniprot
Match: A0A6H5JSM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSM1_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 7.020e-73
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 3 
Query:    3 GVAGWSWGFTVSGRLRTRDPVEDNVRVVRHQSFVIWALCCGMAVVGTMEAMVASYVRPWWLQIMANAGFTFLAFVVGCGVFGHSHEWVLRDPNLEKPLFLLDVCVVS 323
            GVAGWSWGFTVSGRLRTRDPVEDNVRVVRHQSFVIW LCCG AVVGTMEAMVASYVRPWWLQIMANAGFTFLAFVVGCG+FGHSHEWVLRDPNLEKPLFLLDVCVVS
Sbjct:   41 GVAGWSWGFTVSGRLRTRDPVEDNVRVVRHQSFVIWTLCCGTAVVGTMEAMVASYVRPWWLQIMANAGFTFLAFVVGCGIFGHSHEWVLRDPNLEKPLFLLDVCVVS 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12405.1996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSM1_9PHAE7.020e-7397.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12405contigEcto-sp13_S_contig12405:1515..3474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size894
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005530.2
Cds size639
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462660.308277-UTR-Ecto-sp13_S_contig12405:1514..15881681462660.308277-UTR-Ecto-sp13_S_contig12405:1514..1588Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12405 1515..1588 +
1681462660.3169672-UTR-Ecto-sp13_S_contig12405:2654..28351681462660.3169672-UTR-Ecto-sp13_S_contig12405:2654..2835Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12405 2655..2835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462660.3268054-CDS-Ecto-sp13_S_contig12405:2835..34741681462660.3268054-CDS-Ecto-sp13_S_contig12405:2835..3474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12405 2836..3474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12405.1996.1prot_Ecto-sp13_S_contig12405.1996.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12405 2836..3474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12405.1996.1

>prot_Ecto-sp13_S_contig12405.1996.1 ID=prot_Ecto-sp13_S_contig12405.1996.1|Name=mRNA_Ecto-sp13_S_contig12405.1996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
MNGFCEIPTLRNPCFCLMFAWLADDGSVRNYGVSGMVCHVRFFLFMFVFY
RLMRNSVRMWRFSPIFCVWSTMTQRDISMDGVGVERCMPRCARGLCCPDP
ARNVVAARLRELTGGPCGYRLFGAKGAFAFFLLSSLQISACSICTVDSNP
WSHVQTLHEDKTGCNSVVRTQMYIFFSFHPYGRLCPTSSICLTYKPGSHE
WVSPPFLLRFLP*
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mRNA from alignment at Ecto-sp13_S_contig12405:1515..3474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12405.1996.1 ID=mRNA_Ecto-sp13_S_contig12405.1996.1|Name=mRNA_Ecto-sp13_S_contig12405.1996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12405:1515..3474+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTGGCCGGATGGAGCTGGGGGTTTACCGTTTCCGGCCGGCTTCGA
ACACGAGATCCTGTTGAAGACAATGTGAGTGCGTTGCTTTTAGAAGTACC
ATTGATAACAAACATGCTAAAATGTATATGTCCAAGGTATGTTGCTGGGG
TGGGTCGACGTATGGAGCACCACTGCGGTGAGTGCAGCATGCGCTCAAGA
GTCATCTACGGTAGTCAGTAGCCTTGGTACAATGTTCGTTCTGCTGCAGT
TCTTGAACATGTGCCGGGGCAGAAACGGGGGGCGGACAGGTTTTGGTAGC
TTATTTCCATTAGTTCGTTGCAAGTCCTGCCTTGTTGAGTTTGTGATCCT
CTCCTCCGGACTGCCGTGTGGGTCGGCAGCTTTTATCAACGAGTCCCCTC
AAGTTTCTGACATACAGCAGCAGAACCTTCGTATTTTTGTTCATATCGCC
TTCTCTCTACTTCAATGAAACTAATGTGTATCACCTTGTTTCCGAGCGTT
GACTTGCAACAACTTGCAGGCGCGTTAGGAGTGCCGCTGGCGCCAGCGAC
ATGGACTCTGTAGCGAGATGCAGAACTTTCTATACCCCTTATTTCCTACA
GTGGGATTTCTCCACCCGCTCGATGTCTTGCCCTGATGGCACGCCCCTAA
CCAAGTTACATACCGCTGCGTTTGATGACAGTTATTATAGTGGCTGTTCC
GTTGCGAGAACTCCTTCCTACTGTAATAATTTTATCGACCTTGAGCCAGC
GCAAATCTAGTTGTGTGTTTGTAGCTGAAGCGTCGACCATCGGCTCCTAC
TGCTGAACGGCAGGGCTATGTGTCGTTTCAGGTGCGACGTACGGATCTCA
AATAAGCCCCTTAGATTAGGGCGTTAGCTCAATCACGCTTGGTACACTAT
CGTTACATACATGTTCTAGAAGCGCAGAAGCCCCAACTGGTTCGGGGGGA
AAGAACCGATCGGCCAATGCGTACAAAGGAGGTTCCGCACTTGAATTTTA
GCGAACCCTCTGTCCAGATAATGCACTTGAAGTCCTGAGGAACCATGTTT
CAGTCGCCTCCCAGAGCAGGATCCACGGGCGAAGATGCGTCTGCTGTGCT
TCACATTGGGTTTAACCTTTGGGACACCCGTCATTCGCAGGTCCGTGTCG
TCCGCCACCAGAGCTTCGTTATCTGGGCTCTTTGCTGTGGGATGGCGGTT
GTAGGCACGATGGAGGCCATGGTCGCGTCTTACGTCAGACCGTGGTGGCT
TCAGATCATGGCGAACGCGGGATTCACTTTCCTTGCCTTCGTGGTTGGGT
GCGGGGTCTTCGGCCATTCACATGAATGGGTTTTGCGAGATCCCAACCTT
GAGAAACCCCTGTTTCTGCTTGATGTTTGCGTGGTTAGCTGACGATGGAA
GTGTTCGAAACTATGGTGTGAGCGGTATGGTATGTCATGTTCGTTTTTTT
CTCTTTATGTTTGTGTTTTACCGTCTGATGAGAAATTCCGTGAGGATGTG
GCGGTTTTCGCCGATTTTTTGTGTGTGGTCCACGATGACCCAAAGAGATA
TTAGTATGGACGGAGTTGGTGTGGAAAGGTGCATGCCCAGGTGTGCGCGT
GGTTTATGTTGCCCAGACCCCGCTCGAAACGTGGTTGCAGCGCGACTGCG
GGAGCTCACAGGAGGTCCGTGTGGATATAGATTGTTTGGTGCAAAAGGTG
CGTTTGCATTTTTTTTGTTGTCTTCACTTCAAATCAGTGCTTGCAGCATT
TGTACGGTTGACTCCAATCCGTGGTCACACGTACAAACATTGCATGAAGA
TAAAACAGGATGCAACAGCGTAGTACGTACGCAAATGTACATATTTTTCT
CGTTCCATCCCTACGGGCGCCTGTGTCCAACTTCCAGTATATGTTTGACG
TACAAGCCGGGGTCACACGAGTGGGTTTCTCCCCCTTTCCTCCTGCGGTT
CCTGCCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12405:1515..3474+

>mRNA_Ecto-sp13_S_contig12405.1996.1 ID=mRNA_Ecto-sp13_S_contig12405.1996.1|Name=mRNA_Ecto-sp13_S_contig12405.1996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12405:1515..3474+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGGGTTTTGCGAGATCCCAACCTTGAGAAACCCCTGTTTCTGCTT
GATGTTTGCGTGGTTAGCTGACGATGGAAGTGTTCGAAACTATGGTGTGA
GCGGTATGGTATGTCATGTTCGTTTTTTTCTCTTTATGTTTGTGTTTTAC
CGTCTGATGAGAAATTCCGTGAGGATGTGGCGGTTTTCGCCGATTTTTTG
TGTGTGGTCCACGATGACCCAAAGAGATATTAGTATGGACGGAGTTGGTG
TGGAAAGGTGCATGCCCAGGTGTGCGCGTGGTTTATGTTGCCCAGACCCC
GCTCGAAACGTGGTTGCAGCGCGACTGCGGGAGCTCACAGGAGGTCCGTG
TGGATATAGATTGTTTGGTGCAAAAGGTGCGTTTGCATTTTTTTTGTTGT
CTTCACTTCAAATCAGTGCTTGCAGCATTTGTACGGTTGACTCCAATCCG
TGGTCACACGTACAAACATTGCATGAAGATAAAACAGGATGCAACAGCGT
AGTACGTACGCAAATGTACATATTTTTCTCGTTCCATCCCTACGGGCGCC
TGTGTCCAACTTCCAGTATATGTTTGACGTACAAGCCGGGGTCACACGAG
TGGGTTTCTCCCCCTTTCCTCCTGCGGTTCCTGCCTTGA
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