mRNA_Ecto-sp13_S_contig8548.19951.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8548.19951.1
Unique NamemRNA_Ecto-sp13_S_contig8548.19951.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5JW51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW51_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 6.250e-72
Identity = 137/261 (52.49%), Postives = 143/261 (54.79%), Query Frame = 3
Query:  282 SLPSYGNQKKRLCLEDRCPRWACRARCYHGFNKDLQQKCCECHKSIKTWCECKSCS-RKTRAVPPANRVSRGTGLVAGLGGGRGRGAPRHVRVSVIRLPAADSAVNTTLSVCIAANQNRVVTTVLQNPAPTATNPKPSPRSSCSRLECHTMPLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPFAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYIRRERKA 1061
            +LPSYGNQKKRLCLEDRC RWACRARCYHGFNKDLQQKCCECHKSIKTWCECKS    K R    A RV R                                                                                                     GAICEHAAASLEALDKNTVVDATPIFFNGINGCP+AGLTACISQARAK FLSEV+ETLLVGMVAEAKD+GVY VVQLGEWGY   ER++
Sbjct:  108 ALPSYGNQKKRLCLEDRCRRWACRARCYHGFNKDLQQKCCECHKSIKTWCECKSDRLAKQRGPTLAFRVLR-----------------------------------------------------------------------------------------------------GAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAKTFLSEVKETLLVGMVAEAKDVGVYQVVQLGEWGYAVSERRS 267          
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5KBV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBV3_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 2.410e-63
Identity = 127/237 (53.59%), Postives = 131/237 (55.27%), Query Frame = 3
Query:  351 RARCYHGFNKDLQQKCCECHKSIKTWCECKSCSRKTRAVPPANRVSRGTGLVAGLGGGRGRGAPRHVRVSVIRLPAADSAVNTTLSVCIAANQNRVVTTVLQNPAPTATNPKPSPRSSCSRLECHTMPLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPFAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYIRRERKA 1061
            RARCYHGFNKDLQQKCCECHKSIKTWCECK                                                                                                M LHQRSVSQTAGANAGVQSATGA CEHA ASLE L KNTVVDATPIFF+GINGCP+AGLTACIS ARAKAFLSEVEETLLVGM AEAKDIGVYPVVQLGEWGY   ER++
Sbjct:  209 RARCYHGFNKDLQQKCCECHKSIKTWCECKR-----------------------------------------------------------------------------------------------MLLHQRSVSQTAGANAGVQSATGASCEHATASLETLGKNTVVDATPIFFDGINGCPYAGLTACISPARAKAFLSEVEETLLVGMGAEAKDIGVYPVVQLGEWGYAVSERRS 350          
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5JWX4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX4_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 5.580e-61
Identity = 120/148 (81.08%), Postives = 122/148 (82.43%), Query Frame = 3
Query:  729 MPLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPFAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYIRRERKAE*NLRTGLGPCEVRQG*RQGQGXXXGRVEEDHCCLGL 1172
            M LHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCP+AGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGY   ER+                  RQG  XXX RVEEDHCC GL
Sbjct:    1 MLLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYAVSERRRW----------------RQGXXXXXXRVEEDHCCPGL 132          
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5JPP3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP3_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 7.580e-50
Identity = 96/112 (85.71%), Postives = 104/112 (92.86%), Query Frame = 3
Query:  729 MPLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPFAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYIRRERKAE 1064
            M L QRSVS+TAGANAGVQSATG ICEHAAASLEALDKNTVV+ATPIFFNGINGCP AGLTACISQARAKAFLSEVEETLL+GMVAEAKD+GVYPVVQL +WGY   ER+++
Sbjct:    1 MRLRQRSVSRTAGANAGVQSATGGICEHAAASLEALDKNTVVNATPIFFNGINGCPHAGLTACISQARAKAFLSEVEETLLLGMVAEAKDVGVYPVVQLSKWGYAVSERRSD 112          
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5JPW5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW5_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.000e-32
Identity = 75/84 (89.29%), Postives = 77/84 (91.67%), Query Frame = 1
Query:    1 VSVGGNVLGWGGSQAGGAGPAAAVSGRAKGGVGGRVPVRSGVQPSPGTGVGALNAKAGRGGGRPARTLSGGRGSGAGVGGHRPG 252
            VSVGG+VLGWGG QAGGAGPAAAVSGRA+GGVGGRVPVR GVQPSPGTGVG LNA  G GG RPARTLSGGRGSGAGVGGHRPG
Sbjct:   43 VSVGGHVLGWGGIQAGGAGPAAAVSGRARGGVGGRVPVRGGVQPSPGTGVGTLNANGGSGGCRPARTLSGGRGSGAGVGGHRPG 126          
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: D7FZU4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZU4_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 8.880e-28
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 2
Query:  341 MGV*GALLPRVQQGSPTEVLRVSQKHQDVVRVQKLL*ENTGGATSQPGIKGYGFGRRIRGR 523
            MGV GALLPRVQQGSPTEVLRV QKHQDVVRVQKLL ENTGGATSQPGIKGYGFGRRIRGR
Sbjct:    1 MGVQGALLPRVQQGSPTEVLRVPQKHQDVVRVQKLLKENTGGATSQPGIKGYGFGRRIRGR 61          
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5KTH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTH3_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 8.780e-27
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1
Query:    1 VSVGGNVLGWGGSQAGGAGPAAAVSGRAKGGVGGRVPVRSGVQPSPGTGVGALNAKAGRGGGRPARTL 204
            VSVGGNVLGWGGSQAGGAGPAAAVSGRAKGGVGGRVPVRSGVQPSPGTGVGALNA  GRGGGRPARTL
Sbjct:   96 VSVGGNVLGWGGSQAGGAGPAAAVSGRAKGGVGGRVPVRSGVQPSPGTGVGALNANGGRGGGRPARTL 163          
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: D7G6G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G0_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.420e-14
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1
Query: 1042 YAVSERRSRTCELDWAHVKYDKGDGXXXXXXXXASRRITAAWGLMCK 1182
            YAVSERRSRTCELDWAHVKYDKGDGXXXXXXXXASRRITAA GL+CK
Sbjct:   21 YAVSERRSRTCELDWAHVKYDKGDGXXXXXXXXASRRITAARGLVCK 67          
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5L044_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L044_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.790e-13
Identity = 42/67 (62.69%), Postives = 43/67 (64.18%), Query Frame = -3
Query:    5 SECAQVCHLLCRLWR*GHQLPFLVRVAHRFAQGLGRRLHPSRGRSLQQRDQPPLLGYRPTQERYRRR 205
            S  A VC LLC  W  GHQLPFLVRVAHR           SRG SL QRDQPPLLGYRP Q+  RRR
Sbjct:   16 SLSAPVCRLLCHRWHYGHQLPFLVRVAHRL----------SRGHSLVQRDQPPLLGYRPAQDVGRRR 72          
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.870e-11
Identity = 53/133 (39.85%), Postives = 56/133 (42.11%), Query Frame = 3
Query:  783 QSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPFAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYIRRERKAE*NLRTGLGPCEVRQG*RQGQGXXXGRVEEDHCCLGLDVQ 1181
            +SATGAICE A ASLEAL KNTVVDATPIFFNGINGCP+AG                                                                      QGQG   GR+EEDHCC GLDVQ
Sbjct:    4 RSATGAICEVADASLEALGKNTVVDATPIFFNGINGCPYAG----------------------------------------------------------------------QGQGQ--GRIEEDHCCPGLDVQ 64          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JW51_9PHAE6.250e-7252.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBV3_9PHAE2.410e-6353.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWX4_9PHAE5.580e-6181.08CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JPP3_9PHAE7.580e-5085.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JPW5_9PHAE2.000e-3289.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FZU4_ECTSI8.880e-2895.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KTH3_9PHAE8.780e-2797.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6G0_ECTSI1.420e-1495.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L044_9PHAE3.790e-1362.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGH9_9PHAE5.870e-1139.85CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8548contigEcto-sp13_S_contig8548:4273..5965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1182
Hectar predicted targeting categoryother localisation
Exons3
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464125.2278256-UTR-Ecto-sp13_S_contig8548:4272..47141681464125.2278256-UTR-Ecto-sp13_S_contig8548:4272..4714Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8548 4273..4714 +
1681464125.2415526-UTR-Ecto-sp13_S_contig8548:4971..52561681464125.2415526-UTR-Ecto-sp13_S_contig8548:4971..5256Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8548 4972..5256 +
1681464125.252457-UTR-Ecto-sp13_S_contig8548:5510..55111681464125.252457-UTR-Ecto-sp13_S_contig8548:5510..5511Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8548 5511..5511 +
1681464125.2788675-UTR-Ecto-sp13_S_contig8548:5850..59651681464125.2788675-UTR-Ecto-sp13_S_contig8548:5850..5965Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8548 5851..5965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464125.2684731-CDS-Ecto-sp13_S_contig8548:5511..58501681464125.2684731-CDS-Ecto-sp13_S_contig8548:5511..5850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8548 5512..5850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8548.19951.1prot_Ecto-sp13_S_contig8548.19951.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8548 5512..5850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8548.19951.1

>prot_Ecto-sp13_S_contig8548.19951.1 ID=prot_Ecto-sp13_S_contig8548.19951.1|Name=mRNA_Ecto-sp13_S_contig8548.19951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MPLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFN
GINGCPFAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLG
EWGYIRRERKAE*
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mRNA from alignment at Ecto-sp13_S_contig8548:4273..5965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8548.19951.1 ID=mRNA_Ecto-sp13_S_contig8548.19951.1|Name=mRNA_Ecto-sp13_S_contig8548.19951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8548:4273..5965+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAGCGTCGGCGGTAACGTTCTTGGGTGGGGCGGTAGCCAAGCAGGGGG GGCTGGTCCCGCTGCTGCAGTGAGCGGCCGCGCGAAGGGTGGAGTCGGCG GCCGAGTCCCTGTGCGAAGCGGTGTGCAACCCTCACCAGGAACGGGAGTT GGTGCCCTTAACGCCAAAGCCGGCAGAGGAGGTGGCAGACCTGCGCGCAC TCTGAGCGGTGGTAGAGGTAGTGGTGCCGGTGTCGGCGGTCATCGTCCTG GGCTGGGCGATAGCCAAACCCTGAGCGGTGGTCATTGCCTTCATACGGAA ACCAGAAAAAGAGACTCTGCCTGGAGGATAGGTGCCCGCGATGGGCGTGT AGGGCGCGCTGCTACCACGGGTTCAACAAGGATCTCCAACAGAAGTGCTG CGAGTGTCACAAAAGCATCAAGACGTGGTGCGAGTGCAAAAGGTGAGCCT GTTCCTTTTTTTTTTGTCATACATCGTCTCCCTCTTTCGAGCAGGTCGGT CTTCCCTTCTTGCGTCATGTTTTCGCCGCGACCTAGAGATGAAGATTGAG GTTGTGGGTTTGACCCCCAAAACCCTCGCAAACCTGGGCACGGGACACGT TGCCGATGTAGGCCTCTCGCTCGCAACGTGTGTCTCGAAAGTATATCCGA CCTCCCAATTGCCTACAATTGTCACCGTTGCGACGTTCCATCTAACCAGC TGCTCTAGGAAAACACGGGCGGTGCCACCAGCCAACCGGGTATCAAGGGG TACGGGTTTGGTCGCCGGATTAGGGGGCGGTAGAGGACGAGGAGCCCCGC GGCATGTACGCGTGAGCGTGATTCGCTTGCCTGCAGCGGATAGTGCTGTA AACACCACGCTGTCGGTATGCATCGCTGCGAACCAAAACCGAGTAGTGAC GACTGTGCTACAGAATCCTGCGCCAACAGCGACGAACCCGAAGCCTTCAC CGCGGAGCAGCTGCTCTAGGTTAGAGTGCCACACGTGAGCGAACCATGAG ATACAGGGTGTAACCGGTTAGATATGTCAAACAGGGTTTTCCAGTGTTCG CTTGCTGTTATTTGTTGTTGGCGGGGTCATGCGAAATGGTGCACGAAGCA CCAGGTCGAAGCTCCTTGAAGTATAGGCCGGCCCGAATATGGCTGTCTTC AGATGGTTTTCTTTTGTCCAAGGTGTTGCTGAATTGTCGTCGTTACTGAA TTGTCGTCGCATGTTTACTCGTCTTGTTCGTCTCTCAGGATGCCTCTTCA TCAGCGATCGGTTAGCCAAACAGCGGGAGCCAACGCTGGCGTTCAGAGTG CTACGGGGGCCATTTGCGAGCACGCCGCTGCGTCGTTGGAGGCGCTTGAC AAGAACACGGTGGTGGACGCGACGCCTATCTTTTTCAACGGCATCAACGG ATGTCCGTTCGCGGGTTTGACCGCGTGTATCTCGCAAGCCCGAGCTAAAG CGTTCTTGTCGGAAGTCGAAGAAACGTTGTTGGTGGGGATGGTGGCGGAG GCAAAAGACATCGGCGTGTACCCAGTCGTCCAACTAGGCGAGTGGGGATA CATACGCCGTGAGCGAAAGGCGGAGTAGAACTTGCGAACTGGACTGGGCC CATGTGAAGTACGACAAGGGTGACGGCAAGGGCAAGGGCAAGGGCAAGGG CGCGTCGAGGAGGATCACTGCTGCCTGGGGCTTGATGTGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8548:4273..5965+

>mRNA_Ecto-sp13_S_contig8548.19951.1 ID=mRNA_Ecto-sp13_S_contig8548.19951.1|Name=mRNA_Ecto-sp13_S_contig8548.19951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8548:4273..5965+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCTTCATCAGCGATCGGTTAGCCAAACAGCGGGAGCCAACGCTGG
CGTTCAGAGTGCTACGGGGGCCATTTGCGAGCACGCCGCTGCGTCGTTGG
AGGCGCTTGACAAGAACACGGTGGTGGACGCGACGCCTATCTTTTTCAAC
GGCATCAACGGATGTCCGTTCGCGGGTTTGACCGCGTGTATCTCGCAAGC
CCGAGCTAAAGCGTTCTTGTCGGAAGTCGAAGAAACGTTGTTGGTGGGGA
TGGTGGCGGAGGCAAAAGACATCGGCGTGTACCCAGTCGTCCAACTAGGC
GAGTGGGGATACATACGCCGTGAGCGAAAGGCGGAGTAG
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