mRNA_Ecto-sp13_S_contig8548.19951.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5JW51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW51_9PHAE) HSP 1 Score: 236 bits (603), Expect = 6.250e-72 Identity = 137/261 (52.49%), Postives = 143/261 (54.79%), Query Frame = 3
Query: 282 SLPSYGNQKKRLCLEDRCPRWACRARCYHGFNKDLQQKCCECHKSIKTWCECKSCS-RKTRAVPPANRVSRGTGLVAGLGGGRGRGAPRHVRVSVIRLPAADSAVNTTLSVCIAANQNRVVTTVLQNPAPTATNPKPSPRSSCSRLECHTMPLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPFAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYIRRERKA 1061
+LPSYGNQKKRLCLEDRC RWACRARCYHGFNKDLQQKCCECHKSIKTWCECKS K R A RV R GAICEHAAASLEALDKNTVVDATPIFFNGINGCP+AGLTACISQARAK FLSEV+ETLLVGMVAEAKD+GVY VVQLGEWGY ER++
Sbjct: 108 ALPSYGNQKKRLCLEDRCRRWACRARCYHGFNKDLQQKCCECHKSIKTWCECKSDRLAKQRGPTLAFRVLR-----------------------------------------------------------------------------------------------------GAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAKTFLSEVKETLLVGMVAEAKDVGVYQVVQLGEWGYAVSERRS 267
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5KBV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBV3_9PHAE) HSP 1 Score: 216 bits (550), Expect = 2.410e-63 Identity = 127/237 (53.59%), Postives = 131/237 (55.27%), Query Frame = 3
Query: 351 RARCYHGFNKDLQQKCCECHKSIKTWCECKSCSRKTRAVPPANRVSRGTGLVAGLGGGRGRGAPRHVRVSVIRLPAADSAVNTTLSVCIAANQNRVVTTVLQNPAPTATNPKPSPRSSCSRLECHTMPLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPFAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYIRRERKA 1061
RARCYHGFNKDLQQKCCECHKSIKTWCECK M LHQRSVSQTAGANAGVQSATGA CEHA ASLE L KNTVVDATPIFF+GINGCP+AGLTACIS ARAKAFLSEVEETLLVGM AEAKDIGVYPVVQLGEWGY ER++
Sbjct: 209 RARCYHGFNKDLQQKCCECHKSIKTWCECKR-----------------------------------------------------------------------------------------------MLLHQRSVSQTAGANAGVQSATGASCEHATASLETLGKNTVVDATPIFFDGINGCPYAGLTACISPARAKAFLSEVEETLLVGMGAEAKDIGVYPVVQLGEWGYAVSERRS 350
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5JWX4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX4_9PHAE) HSP 1 Score: 216 bits (550), Expect = 5.580e-61 Identity = 120/148 (81.08%), Postives = 122/148 (82.43%), Query Frame = 3
Query: 729 MPLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPFAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYIRRERKAE*NLRTGLGPCEVRQG*RQGQGXXXGRVEEDHCCLGL 1172
M LHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCP+AGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGY ER+ RQG XXX RVEEDHCC GL
Sbjct: 1 MLLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYAVSERRRW----------------RQGXXXXXXRVEEDHCCPGL 132
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5JPP3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP3_9PHAE) HSP 1 Score: 189 bits (479), Expect = 7.580e-50 Identity = 96/112 (85.71%), Postives = 104/112 (92.86%), Query Frame = 3
Query: 729 MPLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPFAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYIRRERKAE 1064
M L QRSVS+TAGANAGVQSATG ICEHAAASLEALDKNTVV+ATPIFFNGINGCP AGLTACISQARAKAFLSEVEETLL+GMVAEAKD+GVYPVVQL +WGY ER+++
Sbjct: 1 MRLRQRSVSRTAGANAGVQSATGGICEHAAASLEALDKNTVVNATPIFFNGINGCPHAGLTACISQARAKAFLSEVEETLLLGMVAEAKDVGVYPVVQLSKWGYAVSERRSD 112
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5JPW5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW5_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.000e-32 Identity = 75/84 (89.29%), Postives = 77/84 (91.67%), Query Frame = 1
Query: 1 VSVGGNVLGWGGSQAGGAGPAAAVSGRAKGGVGGRVPVRSGVQPSPGTGVGALNAKAGRGGGRPARTLSGGRGSGAGVGGHRPG 252
VSVGG+VLGWGG QAGGAGPAAAVSGRA+GGVGGRVPVR GVQPSPGTGVG LNA G GG RPARTLSGGRGSGAGVGGHRPG
Sbjct: 43 VSVGGHVLGWGGIQAGGAGPAAAVSGRARGGVGGRVPVRGGVQPSPGTGVGTLNANGGSGGCRPARTLSGGRGSGAGVGGHRPG 126
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: D7FZU4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZU4_ECTSI) HSP 1 Score: 113 bits (283), Expect = 8.880e-28 Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 2
Query: 341 MGV*GALLPRVQQGSPTEVLRVSQKHQDVVRVQKLL*ENTGGATSQPGIKGYGFGRRIRGR 523
MGV GALLPRVQQGSPTEVLRV QKHQDVVRVQKLL ENTGGATSQPGIKGYGFGRRIRGR
Sbjct: 1 MGVQGALLPRVQQGSPTEVLRVPQKHQDVVRVQKLLKENTGGATSQPGIKGYGFGRRIRGR 61
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5KTH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTH3_9PHAE) HSP 1 Score: 117 bits (292), Expect = 8.780e-27 Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1
Query: 1 VSVGGNVLGWGGSQAGGAGPAAAVSGRAKGGVGGRVPVRSGVQPSPGTGVGALNAKAGRGGGRPARTL 204
VSVGGNVLGWGGSQAGGAGPAAAVSGRAKGGVGGRVPVRSGVQPSPGTGVGALNA GRGGGRPARTL
Sbjct: 96 VSVGGNVLGWGGSQAGGAGPAAAVSGRAKGGVGGRVPVRSGVQPSPGTGVGALNANGGRGGGRPARTL 163
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: D7G6G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G0_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 1.420e-14 Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1
Query: 1042 YAVSERRSRTCELDWAHVKYDKGDGXXXXXXXXASRRITAAWGLMCK 1182
YAVSERRSRTCELDWAHVKYDKGDGXXXXXXXXASRRITAA GL+CK
Sbjct: 21 YAVSERRSRTCELDWAHVKYDKGDGXXXXXXXXASRRITAARGLVCK 67
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5L044_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L044_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 3.790e-13 Identity = 42/67 (62.69%), Postives = 43/67 (64.18%), Query Frame = -3
Query: 5 SECAQVCHLLCRLWR*GHQLPFLVRVAHRFAQGLGRRLHPSRGRSLQQRDQPPLLGYRPTQERYRRR 205
S A VC LLC W GHQLPFLVRVAHR SRG SL QRDQPPLLGYRP Q+ RRR
Sbjct: 16 SLSAPVCRLLCHRWHYGHQLPFLVRVAHRL----------SRGHSLVQRDQPPLLGYRPAQDVGRRR 72
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 5.870e-11 Identity = 53/133 (39.85%), Postives = 56/133 (42.11%), Query Frame = 3
Query: 783 QSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPFAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYIRRERKAE*NLRTGLGPCEVRQG*RQGQGXXXGRVEEDHCCLGLDVQ 1181
+SATGAICE A ASLEAL KNTVVDATPIFFNGINGCP+AG QGQG GR+EEDHCC GLDVQ
Sbjct: 4 RSATGAICEVADASLEALGKNTVVDATPIFFNGINGCPYAG----------------------------------------------------------------------QGQGQ--GRIEEDHCCPGLDVQ 64 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8548.19951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8548.19951.1 >prot_Ecto-sp13_S_contig8548.19951.1 ID=prot_Ecto-sp13_S_contig8548.19951.1|Name=mRNA_Ecto-sp13_S_contig8548.19951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp MPLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNback to top mRNA from alignment at Ecto-sp13_S_contig8548:4273..5965+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8548.19951.1 ID=mRNA_Ecto-sp13_S_contig8548.19951.1|Name=mRNA_Ecto-sp13_S_contig8548.19951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8548:4273..5965+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8548:4273..5965+ >mRNA_Ecto-sp13_S_contig8548.19951.1 ID=mRNA_Ecto-sp13_S_contig8548.19951.1|Name=mRNA_Ecto-sp13_S_contig8548.19951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8548:4273..5965+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |