mRNA_Ecto-sp13_S_contig12404.1995.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12404.1995.1
Unique NamemRNA_Ecto-sp13_S_contig12404.1995.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12404.1995.1 vs. uniprot
Match: D7FYI4_ECTSI (S5 DRBM domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7FYI4_ECTSI)

HSP 1 Score: 459 bits (1182), Expect = 6.180e-159
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1 
Query:   73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF 762
            DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF
Sbjct:   52 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF 281
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BLAST of mRNA_Ecto-sp13_S_contig12404.1995.1 vs. uniprot
Match: A0A835Z6C9_9STRA (40S ribosomal protein S2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C9_9STRA)

HSP 1 Score: 383 bits (983), Expect = 3.530e-129
Identity = 189/219 (86.30%), Postives = 202/219 (92.24%), Query Frame = 1 
Query:   82 KEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKN 738
            KEWVP+TKLGRLVKE KIKSLE+IY FSM I+E QIVD FLG KLKDEVMKIMPVQKVSAAGQITRFKAFVAVGD +GHVGLGVKCAKEVATAIRGAI IAKMSVVP+RRGYWGRRNG PHTVP KVTGKCGSVRVRLIPAPRGTGLVA+PV +KLL MAGVEDCYT S GHTRT+GNFVKAV+FAL KTYGYLSPELW PT F+++PYQEHTDFLAK+
Sbjct:   31 KEWVPVTKLGRLVKEEKIKSLEEIYSFSMRIQECQIVDKFLGDKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDSNGHVGLGVKCAKEVATAIRGAITIAKMSVVPIRRGYWGRRNGQPHTVPCKVTGKCGSVRVRLIPAPRGTGLVASPVSRKLLGMAGVEDCYTCSNGHTRTMGNFVKAVFFALGKTYGYLSPELWAPTQFKASPYQEHTDFLAKS 249
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BLAST of mRNA_Ecto-sp13_S_contig12404.1995.1 vs. uniprot
Match: A0A7S4UVA6_9DINO (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S4UVA6_9DINO)

HSP 1 Score: 365 bits (937), Expect = 7.620e-122
Identity = 180/221 (81.45%), Postives = 201/221 (90.95%), Query Frame = 1 
Query:   73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAK 735
            D DKEWVP+TKLGRLVK+ KIKSLE+IYL+S+ IKEYQIVD+FL + LKDEVMKIMPVQK SAAGQ TRFKAFVAVGD +GHVGLGVKCA EVATAIRGAII+AK+SVVP+RRGYWG++ G+PHTV NKVTGKCGSV VRLIPAPRGTGLVA+PVPKKLL MAGVED Y+ S GHTRT+GNF+KAVY AL+KTYGYLSPELWKPTVF   PYQE+TDFL+K
Sbjct:   41 DGDKEWVPVTKLGRLVKDGKIKSLEEIYLYSLPIKEYQIVDYFLPN-LKDEVMKIMPVQKQSAAGQRTRFKAFVAVGDYNGHVGLGVKCASEVATAIRGAIILAKISVVPIRRGYWGKKVGLPHTVANKVTGKCGSVSVRLIPAPRGTGLVASPVPKKLLGMAGVEDVYSQSTGHTRTMGNFIKAVYTALSKTYGYLSPELWKPTVFTPTPYQEYTDFLSK 260
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BLAST of mRNA_Ecto-sp13_S_contig12404.1995.1 vs. uniprot
Match: A0A7S2BZ58_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BZ58_9STRA)

HSP 1 Score: 365 bits (937), Expect = 1.640e-121
Identity = 181/233 (77.68%), Postives = 203/233 (87.12%), Query Frame = 1 
Query:   73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFL----AKNPAPKAAE 759
            DDDKEWVPITKLGRLVKE KIKSLE+I+LFSM IKEYQIVD FLG+KLKDEVM IMPVQK + AGQ TRFKAFVAVGD SGHVGLGVKCAKEVATAIRGAII+AKM+++P+RRG+WG++ G PHTV  K+TGKCGSVRVRLIPAPRGTGLVAAP  KK+L+MAG++DCYTSSRGHTRT+GNF+KA +FALAK+YGYLSPELW  T F   P+QEHTDFL     K  APK  E
Sbjct:   63 DDDKEWVPITKLGRLVKEQKIKSLEEIFLFSMPIKEYQIVDLFLGTKLKDEVMGIMPVQKQTTAGQRTRFKAFVAVGDFSGHVGLGVKCAKEVATAIRGAIIMAKMNIIPIRRGFWGKQVGQPHTVSQKLTGKCGSVRVRLIPAPRGTGLVAAPATKKILAMAGLDDCYTSSRGHTRTMGNFIKACFFALAKSYGYLSPELWPETQFLPPPFQEHTDFLKNAGGKEAAPKPFE 295
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BLAST of mRNA_Ecto-sp13_S_contig12404.1995.1 vs. uniprot
Match: A0A3M6TJ54_POCDA (40S ribosomal protein S2 n=3 Tax=Astrocoeniina TaxID=123757 RepID=A0A3M6TJ54_POCDA)

HSP 1 Score: 358 bits (918), Expect = 5.520e-119
Identity = 171/221 (77.38%), Postives = 198/221 (89.59%), Query Frame = 1 
Query:   76 DDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKN 738
            +DKEWVP+TKLGRLVK+ KIK+LE IYLFS+ IKE++I+DFFLGS LKDEV+KIMPVQK + AGQ TRFKAFVA+GD SGHVGLGVKC+KEVATAIRGAII+AK+SV+PVRRGYWG + G PHTVP KVTGKCGSVRVRLIPAPRGTG+V+APVPKKLL MAG+EDCYTS+RG T TLGNF KA + A++KT+ YL+P++WK TVF  APYQE TDFLAKN
Sbjct:   41 EDKEWVPVTKLGRLVKDMKIKTLEQIYLFSLPIKEHEIIDFFLGSHLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSSGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGQPHTVPCKVTGKCGSVRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSARGQTATLGNFAKATFAAISKTFCYLTPDMWKDTVFTKAPYQEFTDFLAKN 261
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BLAST of mRNA_Ecto-sp13_S_contig12404.1995.1 vs. uniprot
Match: A0A484DZT2_BRELC (S5 DRBM domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A484DZT2_BRELC)

HSP 1 Score: 357 bits (915), Expect = 9.310e-119
Identity = 195/245 (79.59%), Postives = 219/245 (89.39%), Query Frame = 1 
Query:    4 RGGFGRXXXXXXXXXXXXXXXXX-DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAK 735
            RGGFGRXXXXXXXXXXXXXXXXX ++ KEWVP+TKLGRLVKE KI SLE+IYLFS+ IKE +IV++FL + LKDEVMKIMPVQK + AGQ TRFKAFVAVGD +GH+GLGVKCAKEVATAIRGAII+AK+S+VPVRRGYWGR  G PHTVPNKVTGKCGSVRVRLIPAPRGTGL AAPVPKKLL MAG+EDCYTS+RGHTRTLGNFVKA ++AL  TY YL+P+LW+   F  +PYQE+TDFLAK
Sbjct:   12 RGGFGRXXXXXXXXXXXXXXXXXXEESKEWVPVTKLGRLVKEGKISSLEEIYLFSLPIKECEIVNYFLEASLKDEVMKIMPVQKQTTAGQRTRFKAFVAVGDSNGHIGLGVKCAKEVATAIRGAIILAKISLVPVRRGYWGRMVGAPHTVPNKVTGKCGSVRVRLIPAPRGTGLCAAPVPKKLLGMAGIEDCYTSARGHTRTLGNFVKATFYALRATYAYLTPDLWEQHTFGQSPYQEYTDFLAK 256
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BLAST of mRNA_Ecto-sp13_S_contig12404.1995.1 vs. uniprot
Match: K3X0V8_GLOUD (S5 DRBM domain-containing protein n=5 Tax=Oomycota TaxID=4762 RepID=K3X0V8_GLOUD)

HSP 1 Score: 354 bits (909), Expect = 7.020e-118
Identity = 190/246 (77.24%), Postives = 215/246 (87.40%), Query Frame = 1 
Query:    4 RGGFGRXXXXXXXXXXXXXXXXX--DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAK 735
            RGGFGR   XXXXXXXXX XXXX  DD+KEWVP+TKLGRLVKE KI SLE+IYLFS+ IKE +IV+ FL ++LKDEVMKIMPVQK + AGQ TRFKAFVAVGD +GH+GLGVKCAKEVAT+IRGAII+AK+++VPVRRGYWG   G PHTVPNKVTGKCGSVRVRLIPAPRGTGL AAP PKKLL MAG+EDCYTS+RGHTRTLGNFVKA ++AL  TY YL+P+LW+   F ++PYQEHTDFLAK
Sbjct:    9 RGGFGRGRGXXXXXXXXXRXXXXGGDDNKEWVPVTKLGRLVKEGKISSLEEIYLFSLPIKECEIVNHFLEAQLKDEVMKIMPVQKQTTAGQRTRFKAFVAVGDHNGHIGLGVKCAKEVATSIRGAIILAKIALVPVRRGYWGLMIGAPHTVPNKVTGKCGSVRVRLIPAPRGTGLCAAPAPKKLLGMAGIEDCYTSARGHTRTLGNFVKATFYALRATYAYLTPDLWEQHSFAASPYQEHTDFLAK 254
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BLAST of mRNA_Ecto-sp13_S_contig12404.1995.1 vs. uniprot
Match: M4BLS4_HYAAE (S5 DRBM domain-containing protein n=19 Tax=Oomycota TaxID=4762 RepID=M4BLS4_HYAAE)

HSP 1 Score: 355 bits (910), Expect = 3.440e-117
Identity = 193/246 (78.46%), Postives = 216/246 (87.80%), Query Frame = 1 
Query:    4 RGGFGRXXXXXXXXXXXXXXXXX--DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAK 735
            RGGFGR XXXXXXXXXXX XXXX  ++ KEWVP+TKLGRLVKE KI SLE+IYLFS+ IKE +IV++FL S LKDEVMKIMPVQK + AGQ TRFKAFVAVGD +GH+GLGVKCAKEVATAIRGAII+AK+S+VPVRRGYWGR  G PHTVPNKVTGKCGSVRVRLIPAPRGTGL AAPVPKKLL MAG+EDCYTS+RGHTRT+GNFVKA ++AL  TY YL+P+LW+   F  +PYQ HTDFLAK
Sbjct:   65 RGGFGRGXXXXXXXXXXXRXXXXXXEESKEWVPVTKLGRLVKEGKIGSLEEIYLFSLPIKECEIVNYFLESSLKDEVMKIMPVQKQTTAGQRTRFKAFVAVGDSNGHIGLGVKCAKEVATAIRGAIILAKISLVPVRRGYWGRMVGAPHTVPNKVTGKCGSVRVRLIPAPRGTGLCAAPVPKKLLGMAGIEDCYTSARGHTRTMGNFVKATFYALRATYAYLTPDLWEQHSFVPSPYQAHTDFLAK 310
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BLAST of mRNA_Ecto-sp13_S_contig12404.1995.1 vs. uniprot
Match: RS2_URECA (40S ribosomal protein S2 n=1 Tax=Urechis caupo TaxID=6431 RepID=RS2_URECA)

HSP 1 Score: 353 bits (905), Expect = 5.480e-117
Identity = 168/222 (75.68%), Postives = 198/222 (89.19%), Query Frame = 1 
Query:   73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKN 738
            D DKEWVP+TKLGRLVK+ KIK+LE+IYLFS+ IKE++I+DFFLG  LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GHVGLGVKC+KEVATAIRGAII+AK+SVVPVRRGYWG + G PHTVP KVTGKCGSV VRLIPAPRGTG+V+APVPKKLL+MAG++DCYTS+RG T TLGNF KA Y A+A TY YL+P+LW+ TVF  +PYQE+TD+LAK+
Sbjct:   41 DGDKEWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFAKATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYLAKH 262
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BLAST of mRNA_Ecto-sp13_S_contig12404.1995.1 vs. uniprot
Match: A0A6P8HCJ6_ACTTE (40S ribosomal protein S2 n=4 Tax=Hexacorallia TaxID=6102 RepID=A0A6P8HCJ6_ACTTE)

HSP 1 Score: 352 bits (902), Expect = 1.450e-116
Identity = 167/221 (75.57%), Postives = 194/221 (87.78%), Query Frame = 1 
Query:   76 DDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKN 738
            +DKEWVP+TKLGRLVK+ KIK+LE IYLFS+ IKE++I+DFFLG+ LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GHVGLGVKC+KEVATAIRGAII+AK+SV+PVRRGYWG + G PHTVP KVTGKCGS RVRLIPAPRGTGLV APVPKKLL MAG+EDCYTS+RG T TLGNF KA + A++KTY YL+P++WK T F   PYQE TD+LAKN
Sbjct:   40 EDKEWVPVTKLGRLVKDLKIKNLEQIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKLGQPHTVPCKVTGKCGSTRVRLIPAPRGTGLVCAPVPKKLLQMAGIEDCYTSTRGQTATLGNFAKATFEAISKTYSYLTPDMWKETEFAKTPYQEFTDYLAKN 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12404.1995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYI4_ECTSI6.180e-159100.00S5 DRBM domain-containing protein n=3 Tax=Eukaryot... [more]
A0A835Z6C9_9STRA3.530e-12986.3040S ribosomal protein S2 n=1 Tax=Tribonema minus T... [more]
A0A7S4UVA6_9DINO7.620e-12281.45Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S2BZ58_9STRA1.640e-12177.68Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3M6TJ54_POCDA5.520e-11977.3840S ribosomal protein S2 n=3 Tax=Astrocoeniina Tax... [more]
A0A484DZT2_BRELC9.310e-11979.59S5 DRBM domain-containing protein n=7 Tax=Peronosp... [more]
K3X0V8_GLOUD7.020e-11877.24S5 DRBM domain-containing protein n=5 Tax=Oomycota... [more]
M4BLS4_HYAAE3.440e-11778.46S5 DRBM domain-containing protein n=19 Tax=Oomycot... [more]
RS2_URECA5.480e-11775.6840S ribosomal protein S2 n=1 Tax=Urechis caupo Tax... [more]
A0A6P8HCJ6_ACTTE1.450e-11675.5740S ribosomal protein S2 n=4 Tax=Hexacorallia TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12404contigEcto-sp13_S_contig12404:1189..3521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score400.6
Seed ortholog evalue4.3e-109
Seed eggNOG ortholog2880.D7FYI4
Preferred nameRPS2
Model size1381
KEGG rclassRC00005,RC00482
KEGG koko:K02355,ko:K02981,ko:K07151,ko:K21668
KEGG ReactionR04216,R05976
KEGG Pathwayko00510,ko00513,ko01100,ko03010,ko04141,ko05167,map00510,map00513,map01100,map03010,map04141,map05167
KEGG ModuleM00072,M00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000184,GO:0000956,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006417,GO:0006450,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009636,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017134,GO:0019222,GO:0019439,GO:0019538,GO:0019838,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030684,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033365,GO:0034097,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042493,GO:0042886,GO:0043043,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045471,GO:0045727,GO:0045903,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051029,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070181,GO:0070670,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071166,GO:0071310,GO:0071345,GO:0071353,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0097305,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1903320,GO:1903322,GO:1990904,GO:2000112
Exons2
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0098@1,KOG0877@2759
EC2.4.99.18
Cds size600
COG Functional cat.J
CAZyGT66
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01003,ko03011,ko03012,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462660.2494664-UTR-Ecto-sp13_S_contig12404:1188..13531681462660.2494664-UTR-Ecto-sp13_S_contig12404:1188..1353Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12404 1189..1353 +
1681462660.2829754-UTR-Ecto-sp13_S_contig12404:2905..35211681462660.2829754-UTR-Ecto-sp13_S_contig12404:2905..3521Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12404 2906..3521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462660.2652924-CDS-Ecto-sp13_S_contig12404:1353..13661681462660.2652924-CDS-Ecto-sp13_S_contig12404:1353..1366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12404 1354..1366 +
1681462660.2744598-CDS-Ecto-sp13_S_contig12404:2318..29051681462660.2744598-CDS-Ecto-sp13_S_contig12404:2318..2905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12404 2319..2905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12404.1995.1prot_Ecto-sp13_S_contig12404.1995.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12404 1354..2905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12404.1995.1

>prot_Ecto-sp13_S_contig12404.1995.1 ID=prot_Ecto-sp13_S_contig12404.1995.1|Name=mRNA_Ecto-sp13_S_contig12404.1995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESG
HVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVT
GKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGN
FVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF*
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mRNA from alignment at Ecto-sp13_S_contig12404:1189..3521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12404.1995.1 ID=mRNA_Ecto-sp13_S_contig12404.1995.1|Name=mRNA_Ecto-sp13_S_contig12404.1995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12404:1189..3521+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCGCGGCGGCTTCGGGAGGGGCCGCGGTGACCGCGGACGCGGACGGGG
CCGTGGGCGCGGGCGCCCGCGCGATGACGACAAGGAGTGGGTGCCCATCA
CCAAGCTCGGCCGCCTGGTGAAAGAGAACAAGATCAAGTCCCTCGAGGAC
ATCTACCTCTTCTCCATGGCCATCAAGGGTGAGAGGGATCAGTTTTTACG
TCTCTGCCGCACGGTAGCAAATACTCCAATCGTGGTATGCGTACGTGGGG
CGAAATCTGTTGTCACAAGACTCGACCCGTAGTACGGTTGGGTACCCTCC
TGTTCCGGTGGAAGACGGGATCCGCTGTTGTACCGTACATGGCACAAGAC
AGCACACCCCTTGGACAAATTTTGAAGGCTCCATTACGCCACGACAAAAA
GGATGCATAAATAATCCAATACCTTTTCGGAAGTCTCTCGACGAGACAGC
TTCAACGCCACCATTTTCGGCGATGTGACTCTTTCTGCTTCTGAGAAATC
AAGGTTTGAAATTAGTACATGTGGTGTGTTGTCTCGTGTCATTCACGGTA
CGTGCGAATAATGAGGGGCGAGGGCCTTCGTCACACCACCTTCTTATGTC
GGGGCCACGACTGTACCATGTTTGGGCGCACGGTTTGTTCCGCGAAGGTT
ATTTTTTCCGGCCGCGCATGCCCCTACATGCCCCCACCCGCGCGGTGTGT
GTGCGTGCGGCCTGTCTGCGAGTTGGCGGACAGATTGTCCAAGCGGTGTA
GGTTGCAATGCGCCTGAAGCCTGTTGAGGTGCTCCGTTAGTCAATCATGT
GTCACGGGCGAACGCCTTGTCCTGCACAACAGAGTACCAGATCGCGGCTT
CTTCGAGGGTCATTTGTACCGTGTTCCGTTCCGTGTGCACGAGTCACGAC
CCCCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAACCC
CCGCCCCAAAGCCTTCCCCCCCTCCCTGCCCACCGCTTCGGGGTTGTAGG
GGANNNNNNNNNNAAAAAAGAACCCAATCGGGGCTTTTTCGTGGTTAGTT
TTTACCCTCTTTCGTTTCCGGTCCTCGAGTCACACCCCCCCCCCCCCCCC
CCCCCCCCTTCTCCTTCACCCGCGAAACAGAGTACCAGATCGTGGACTTC
TTCCTCGGCTCAAAGCTCAAGGACGAGGTGATGAAGATCATGCCCGTCCA
GAAGGTGTCCGCCGCCGGTCAGATCACCCGCTTCAAGGCCTTTGTCGCCG
TCGGCGACGAGAGCGGCCACGTCGGCCTCGGCGTCAAGTGCGCCAAGGAG
GTGGCCACGGCCATCCGCGGCGCCATCATCATCGCCAAGATGTCGGTCGT
GCCCGTTCGCCGCGGCTACTGGGGCCGCAGGAACGGCATGCCCCACACCG
TGCCCAACAAGGTGACTGGAAAGTGCGGGTCCGTGCGCGTGCGCCTGATC
CCGGCCCCGCGCGGGACGGGCCTCGTGGCCGCCCCCGTGCCCAAGAAGCT
CCTGAGCATGGCCGGCGTGGAGGACTGCTACACGTCTTCCCGTGGGCACA
CCCGCACACTGGGCAACTTCGTGAAGGCTGTCTACTTCGCCCTCGCCAAG
ACCTACGGCTACCTCTCCCCCGAGCTGTGGAAGCCCACCGTTTTCCAGTC
GGCGCCTTACCAGGAGCACACCGACTTCCTGGCCAAGAACCCGGCACCTA
AGGCGGCGGAGTTCTAAACCGAACCGTCACGAGTTTCGCCGCGTCGCGAA
AAGGAAGTCTATCGAGGGGGATGGGTGATTTGGGGGGAAGAGGAAGGAAA
GCGTTAGGGCAAGAACGCTACGGTGCGTAGGTGTCGACCTTCTTGGCTTC
CCGGCCACCTCTCTCGTCTGGCTGCTGCTCCTGCGAGTGGATAGAGGGCT
GTTTTCTTTTCGTTTCGCGGAGGCGAGGGCTGTGGTAGCTAGCATAGTCT
TTGATAGCCGAGGGGGGGCGGGGGAGGGCCTTACTAGCGGTAGGGAAAGC
GTTGGGCGACGCTGCGGTGCGATGTGCCGGCCTTGCTGCATGTGTTTTCT
TCTCCCGTCATTTTCTCCTTAGCGTGTTGAACGAGATTCTTCTGCTGTTG
CTTGTGCCTCTTTTGGCATTGCTGCTGCCTTTAATAAACGTGCTTCAAAT
TTACCGTACAAGCATCTCGTGTAAAGCTGCGAGCTGCTCTACTGTGGGAC
GGGTGTCCCTTACTCCTCCAGGGCAGAAGACGCCTCACAGAACCTTATAA
TCAGCCGCAACCTGCTCTTGCCGTCGAAGTACGATCCGTACATCGATGTA
CCGGCATTCACTCCCGCCTGCCGGAGCCGCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12404:1189..3521+

>mRNA_Ecto-sp13_S_contig12404.1995.1 ID=mRNA_Ecto-sp13_S_contig12404.1995.1|Name=mRNA_Ecto-sp13_S_contig12404.1995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12404:1189..3521+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATCAAGGAGTACCAGATCGTGGACTTCTTCCTCGGCTCAAAGCT
CAAGGACGAGGTGATGAAGATCATGCCCGTCCAGAAGGTGTCCGCCGCCG
GTCAGATCACCCGCTTCAAGGCCTTTGTCGCCGTCGGCGACGAGAGCGGC
CACGTCGGCCTCGGCGTCAAGTGCGCCAAGGAGGTGGCCACGGCCATCCG
CGGCGCCATCATCATCGCCAAGATGTCGGTCGTGCCCGTTCGCCGCGGCT
ACTGGGGCCGCAGGAACGGCATGCCCCACACCGTGCCCAACAAGGTGACT
GGAAAGTGCGGGTCCGTGCGCGTGCGCCTGATCCCGGCCCCGCGCGGGAC
GGGCCTCGTGGCCGCCCCCGTGCCCAAGAAGCTCCTGAGCATGGCCGGCG
TGGAGGACTGCTACACGTCTTCCCGTGGGCACACCCGCACACTGGGCAAC
TTCGTGAAGGCTGTCTACTTCGCCCTCGCCAAGACCTACGGCTACCTCTC
CCCCGAGCTGTGGAAGCCCACCGTTTTCCAGTCGGCGCCTTACCAGGAGC
ACACCGACTTCCTGGCCAAGAACCCGGCACCTAAGGCGGCGGAGTTCTAA
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