mRNA_Ecto-sp13_S_contig8541.19945.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8541.19945.1
Unique NamemRNA_Ecto-sp13_S_contig8541.19945.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8541.19945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8541contigEcto-sp13_S_contig8541:5834..6481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size639
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464124.6081824-UTR-Ecto-sp13_S_contig8541:5833..58801681464124.6081824-UTR-Ecto-sp13_S_contig8541:5833..5880Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8541 5834..5880 -
1681464124.6567063-UTR-Ecto-sp13_S_contig8541:6357..64811681464124.6567063-UTR-Ecto-sp13_S_contig8541:6357..6481Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8541 6358..6481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464124.6214445-CDS-Ecto-sp13_S_contig8541:5880..60631681464124.6214445-CDS-Ecto-sp13_S_contig8541:5880..6063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8541 5881..6063 -
1681464124.6437159-CDS-Ecto-sp13_S_contig8541:6072..63571681464124.6437159-CDS-Ecto-sp13_S_contig8541:6072..6357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8541 6073..6357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8541.19945.1prot_Ecto-sp13_S_contig8541.19945.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8541 5881..6357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8541.19945.1

>prot_Ecto-sp13_S_contig8541.19945.1 ID=prot_Ecto-sp13_S_contig8541.19945.1|Name=mRNA_Ecto-sp13_S_contig8541.19945.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
MYDTSHHKNGGTVAMINWTKTHTHTRSRFTRGNDQWFSRSTGMELHTVTC
TKPSTQQLITLQKGLILYCHTLVFAEGRPISSMGVHQSNTKPIPHVDKTP
SHRPVRRVHVQRSVQWVLPISPRTVNLNEHWSQEAQQIKKARTKCFRPDR
TRCHP*
back to top

mRNA from alignment at Ecto-sp13_S_contig8541:5834..6481-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8541.19945.1 ID=mRNA_Ecto-sp13_S_contig8541.19945.1|Name=mRNA_Ecto-sp13_S_contig8541.19945.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8541:5834..6481- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCACGAACACAAAAAATACAGAGAAGAAAAGGGCCCGGGCTTTACCC
CCCCCTGCGTGACCCTGGATGGTTGTAATTCTACGACAAACTACAATGAA
GAGTGTAGTACTCTATACTGAAAAATGTATGACACATCTCACCACAAAAA
TGGGGGGACTGTCGCCATGATAAATTGGACGAAAACACACACACATACAC
GGTCGCGGTTCACGCGGGGGAACGATCAATGGTTCTCACGTTCAACCGGT
ATGGAATTGCATACCGTAACGTGCACTAAACCAAGCACACAACAACTAAT
CACCTTACAAAAGGGACTCATCTTGTACTGCCATACATTGGTATTCGCAG
AAGGAAGACCAATATCATCGATGGGAGTACATCAGTCAAACACAAAACCG
ATACCGCATGTACCACAGGTGGACAAAACACCGTCGCATCGTCCGGTTCG
ACGAGTGCACGTGCAGAGATCTGTGCAGTGGGTGCTTCCTATTTCTCCAC
GTACCGTGAACCTAAATGAACACTGGTCTCAGGAGGCCCAACAAATAAAA
AAAGCAAGGACGAAGTGTTTTAGACCCGATCGCACCCGGTGCCATCCCTA
GACTATGCCTCAAACAGATGAGGACCGCCGCCTGCTCGTAGATTTGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8541:5834..6481-

>mRNA_Ecto-sp13_S_contig8541.19945.1 ID=mRNA_Ecto-sp13_S_contig8541.19945.1|Name=mRNA_Ecto-sp13_S_contig8541.19945.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8541:5834..6481- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATGACACATCTCACCACAAAAATGGGGGGACTGTCGCCATGATAAA
TTGGACGAAAACACACACACATACACGGTCGCGGTTCACGCGGGGGAACG
ATCAATGGTTCTCACGTTCAACCGGTATGGAATTGCATACCGTAACGTGC
ACTAAACCAAGCACACAACAACTAATCACCTTACAAAAGGGACTCATCTT
GTACTGCCATACATTGGTATTCGCAGAAGGAAGACCAATATCATCGATGG
GAGTACATCAGTCAAACACAAAACCGATACCGCATGTGGACAAAACACCG
TCGCATCGTCCGGTTCGACGAGTGCACGTGCAGAGATCTGTGCAGTGGGT
GCTTCCTATTTCTCCACGTACCGTGAACCTAAATGAACACTGGTCTCAGG
AGGCCCAACAAATAAAAAAAGCAAGGACGAAGTGTTTTAGACCCGATCGC
ACCCGGTGCCATCCCTAG
back to top