mRNA_Ecto-sp13_S_contig85381.19942.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85381.19942.1
Unique NamemRNA_Ecto-sp13_S_contig85381.19942.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85381.19942.1 vs. uniprot
Match: D7FX35_ECTSI (SKIP_SNW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX35_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 3.670e-41
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:   46 MAATFLPAPRHKYEVHADEGLSSLLPPAPKHKVPPYGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMGR 255
            MAATFLPAPRHKYEVHADEGLSSLLPPAPKHKVPPYGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMGR
Sbjct:    1 MAATFLPAPRHKYEVHADEGLSSLLPPAPKHKVPPYGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMGR 70
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BLAST of mRNA_Ecto-sp13_S_contig85381.19942.1 vs. uniprot
Match: A0A835ZBA7_9STRA (SKIP/SNW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBA7_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.040e-23
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   52 ATFLPAPRHKYEVHADEGLSSLLPPAPKHKVPPYGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMGR 255
            ATFLPAPRH+Y V  D G     P  PK  +PPYGQRQ FVPR  ADFGDGGA+PE+HVAQ+PL MG+
Sbjct:    2 ATFLPAPRHQYAVRDDRGAIPTAPSRPKPVIPPYGQRQKFVPRTMADFGDGGAYPEVHVAQYPLGMGK 69
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BLAST of mRNA_Ecto-sp13_S_contig85381.19942.1 vs. uniprot
Match: A0A7S0NQI2_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NQI2_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 6.270e-19
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:   46 MAATFLPAPRHKYEVHADEGLSSLLPPAPKHKVPPYGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMGR 255
            MAA  LP PR+  EV  ++       PAP +K PP G R+ ++PR+QADFGDGGAFPEIHVAQ+PL+MGR
Sbjct:    1 MAALILPQPRNVEEVEVEDAGDGGSAPAPVNKPPPQGARKGWIPRSQADFGDGGAFPEIHVAQYPLDMGR 70
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BLAST of mRNA_Ecto-sp13_S_contig85381.19942.1 vs. uniprot
Match: A0A8J2S435_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S435_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.040e-18
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   61 LPAPRHKYEVHADEGLSSLLPPAPKHKVPPYGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMG 252
            LPAP+ +Y V  D   S    P PK + PPYG+R+ FVPR+ ADFGDGGAFPEIHVAQ+PL MG
Sbjct:    8 LPAPQREYVVWQDPDKSLRKAPTPKSRAPPYGRRRGFVPRSIADFGDGGAFPEIHVAQYPLGMG 71
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BLAST of mRNA_Ecto-sp13_S_contig85381.19942.1 vs. uniprot
Match: A0A7S3ZXS4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZXS4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.050e-18
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   61 LPAPRHKYEVHADEGLSSLLPPAPKHKVPPYGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMG 252
            LPAP+ +Y V  D   S    P PK + PPYG+R+ FVPR+ ADFGDGGAFPEIHVAQ+PL MG
Sbjct:   65 LPAPQREYVVWQDPDKSLRKAPTPKSRAPPYGRRRGFVPRSIADFGDGGAFPEIHVAQYPLGMG 128
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BLAST of mRNA_Ecto-sp13_S_contig85381.19942.1 vs. uniprot
Match: A0A7S0L1V8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L1V8_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 1.380e-17
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   46 MAATFLPAPRHKYEVHADEGLSSLLPPAPKHKVPPYGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMGR 255
            MAA  LP PR+     A++    +   A   K PP G+R+ ++PR+QADFGDGGAFP+IHVAQ+PL+MGR
Sbjct:    3 MAALVLPIPRNMEADEAEDSAPLVSAQATVRKPPPQGKRKGWIPRSQADFGDGGAFPDIHVAQYPLDMGR 72
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BLAST of mRNA_Ecto-sp13_S_contig85381.19942.1 vs. uniprot
Match: A0A7S4DEU1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEU1_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 4.780e-17
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   61 LPAPRHKYEVHADEGLSSLLPPA-PKHKVPPYGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMGR 255
            LP P++ Y VH DE  + L   A P  + PPYG+R+ FVPR+ ADFGDGGAFPEIHV Q PL MGR
Sbjct:    8 LPNPKNSYVVHQDEAPALLFARAQPGREPPPYGKRKRFVPRSVADFGDGGAFPEIHVVQHPLNMGR 73
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BLAST of mRNA_Ecto-sp13_S_contig85381.19942.1 vs. uniprot
Match: A0A642V172_9ASCO (Pre-mRNA-processing protein 45 n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642V172_9ASCO)

HSP 1 Score: 83.6 bits (205), Expect = 6.780e-17
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   52 ATFLPAPRHKYEVHADEG-------LSSLLPPAPKHKVPPYGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMGR 255
            A+ LP P+H+ E   DE        LS  +  A KH +PPYGQRQSF P+ Q D+GDGGA+PEIH+AQ+PL+MGR
Sbjct:    5 ASVLPTPKHREEKRDDERKAQESERLSREV--ALKHTIPPYGQRQSFRPQTQQDYGDGGAYPEIHIAQYPLDMGR 77
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BLAST of mRNA_Ecto-sp13_S_contig85381.19942.1 vs. uniprot
Match: A0A7S1CN84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CN84_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.020e-16
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:   61 LPAPRHKYEVHADEGLSSLLPPAPKHKVPPYGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMGR 255
            +PAPR +Y+V+ D+G ++     P  ++PPY  R+ FVPR++ DFGDGGAFPEIHV Q+PL+MGR
Sbjct:    9 IPAPRREYDVY-DDGDATAPAVRPAKRIPPYLHRRGFVPRSKEDFGDGGAFPEIHVKQYPLDMGR 72
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BLAST of mRNA_Ecto-sp13_S_contig85381.19942.1 vs. uniprot
Match: A0A0S7L5N2_9TELE (SNW domain-containing protein 1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7L5N2_9TELE)

HSP 1 Score: 76.6 bits (187), Expect = 2.920e-16
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   25 VGSWPRTMAATFLPAPRH--KYEVHADEGLS-----SLLPPAPKHKVPPYGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMGR 255
            VG   +    +FLPAP    + ++ A+E L      S    A + + PPYG R+ +VPR+  DFGDGGAFPEIHVAQFPLEMGR
Sbjct:    1 VGKKGKMSLTSFLPAPTQLSQDQLEAEERLRAQKSHSTALVASRKEPPPYGHRKGWVPRSLEDFGDGGAFPEIHVAQFPLEMGR 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85381.19942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX35_ECTSI3.670e-41100.00SKIP_SNW domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZBA7_9STRA1.040e-2366.18SKIP/SNW domain-containing protein n=1 Tax=Tribone... [more]
A0A7S0NQI2_9EUKA6.270e-1958.57Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]
A0A8J2S435_9STRA4.040e-1862.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZXS4_9STRA4.050e-1862.50Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S0L1V8_9EUKA1.380e-1752.86Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S4DEU1_HETAK4.780e-1760.61Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A642V172_9ASCO6.780e-1754.67Pre-mRNA-processing protein 45 n=1 Tax=Trichomonas... [more]
A0A7S1CN84_9STRA2.020e-1655.38Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0S7L5N2_9TELE2.920e-1650.00SNW domain-containing protein 1 (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85381contigEcto-sp13_S_contig85381:321..575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score149.4
Seed ortholog evalue7.4e-34
Seed eggNOG ortholog2880.D7FX35
Preferred nameSNW1
Model size255
KEGG koko:K06063
KEGG Pathwayko03040,ko04330,ko05169,ko05203,map03040,map04330,map05169,map05203
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000785,GO:0000974,GO:0001101,GO:0001700,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003714,GO:0003723,GO:0005102,GO:0005112,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006970,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007275,GO:0007276,GO:0007281,GO:0007399,GO:0007444,GO:0007517,GO:0007519,GO:0007610,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0008593,GO:0008630,GO:0009058,GO:0009059,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010228,GO:0010467,GO:0010468,GO:0010555,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010720,GO:0012501,GO:0014706,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0017015,GO:0018130,GO:0018991,GO:0019098,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030511,GO:0030522,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032526,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033120,GO:0033554,GO:0033993,GO:0034399,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035214,GO:0035257,GO:0035258,GO:0035295,GO:0035556,GO:0035821,GO:0035914,GO:0036002,GO:0040011,GO:0040025,GO:0042221,GO:0042303,GO:0042752,GO:0042771,GO:0042809,GO:0042974,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045595,GO:0045597,GO:0045747,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046332,GO:0046483,GO:0046782,GO:0047484,GO:0048024,GO:0048026,GO:0048384,GO:0048385,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048569,GO:0048580,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050434,GO:0050681,GO:0050684,GO:0050685,GO:0050767,GO:0050769,GO:0050789,GO:0050792,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051427,GO:0051569,GO:0051571,GO:0051702,GO:0051704,GO:0051716,GO:0051817,GO:0051851,GO:0051960,GO:0051962,GO:0052312,GO:0052472,GO:0060065,GO:0060255,GO:0060284,GO:0060429,GO:0060537,GO:0060538,GO:0061061,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0070562,GO:0070564,GO:0070887,GO:0071007,GO:0071013,GO:0071014,GO:0071141,GO:0071229,GO:0071300,GO:0071310,GO:0071396,GO:0071704,GO:0071826,GO:0071840,GO:0072331,GO:0072332,GO:0080090,GO:0080134,GO:0090092,GO:0090100,GO:0090287,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097659,GO:0140110,GO:1901000,GO:1901002,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901700,GO:1901701,GO:1902275,GO:1902494,GO:1902584,GO:1902679,GO:1902680,GO:1903311,GO:1903313,GO:1903506,GO:1903507,GO:1903508,GO:1903844,GO:1903846,GO:1905269,GO:1990904,GO:2000026,GO:2000028,GO:2000070,GO:2000112,GO:2000113,GO:2000241,GO:2001141,GO:2001252
Exons1
EggNOG free text desc.generation of catalytic spliceosome for second transesterification step
EggNOG OGsKOG2441@1,KOG2441@2759
Cds size255
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464124.2252192-CDS-Ecto-sp13_S_contig85381:320..5751681464124.2252192-CDS-Ecto-sp13_S_contig85381:320..575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85381 321..575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85381.19942.1prot_Ecto-sp13_S_contig85381.19942.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85381 321..575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85381.19942.1

>prot_Ecto-sp13_S_contig85381.19942.1 ID=prot_Ecto-sp13_S_contig85381.19942.1|Name=mRNA_Ecto-sp13_S_contig85381.19942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
PIFRIKQTVGSWPRTMAATFLPAPRHKYEVHADEGLSSLLPPAPKHKVPP
YGQRQSFVPRAQADFGDGGAFPEIHVAQFPLEMGR
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mRNA from alignment at Ecto-sp13_S_contig85381:321..575-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85381.19942.1 ID=mRNA_Ecto-sp13_S_contig85381.19942.1|Name=mRNA_Ecto-sp13_S_contig85381.19942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85381:321..575- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAATCTTCAGAATCAAGCAAACAGTCGGCAGCTGGCCGCGCACCATGGC
CGCAACCTTTCTGCCTGCCCCACGGCACAAATACGAGGTACACGCAGACG
AAGGCCTCAGTTCCCTGCTCCCTCCGGCCCCAAAGCATAAGGTGCCTCCC
TACGGGCAGCGACAGAGCTTTGTGCCCCGCGCGCAGGCGGACTTCGGCGA
TGGAGGAGCATTCCCGGAGATCCATGTCGCCCAGTTTCCTCTCGAGATGG
GGCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85381:321..575-

>mRNA_Ecto-sp13_S_contig85381.19942.1 ID=mRNA_Ecto-sp13_S_contig85381.19942.1|Name=mRNA_Ecto-sp13_S_contig85381.19942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85381:321..575- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAATCTTCAGAATCAAGCAAACAGTCGGCAGCTGGCCGCGCACCATGGC
CGCAACCTTTCTGCCTGCCCCACGGCACAAATACGAGGTACACGCAGACG
AAGGCCTCAGTTCCCTGCTCCCTCCGGCCCCAAAGCATAAGGTGCCTCCC
TACGGGCAGCGACAGAGCTTTGTGCCCCGCGCGCAGGCGGACTTCGGCGA
TGGAGGAGCATTCCCGGAGATCCATGTCGCCCAGTTTCCTCTCGAGATGG
GGCGT
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