mRNA_Ecto-sp13_S_contig12402.1994.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12402.1994.1
Unique NamemRNA_Ecto-sp13_S_contig12402.1994.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12402.1994.1 vs. uniprot
Match: A0A6H5JT46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT46_9PHAE)

HSP 1 Score: 410 bits (1053), Expect = 7.820e-135
Identity = 390/448 (87.05%), Postives = 399/448 (89.06%), Query Frame = 3 
Query:  507 MQAHPMMTAAVQGGSWMAYQDREGRPCWHNTATNEWTYNLSNGXXXXXXXXXXXXXXXXXXXXXXXXXXTVPAGMYAWPTAPAPAAVMVPTAVPQQLAGPYFYGADPGTAAMAPAMMMPAAGPYDAVAAHQQQQMLYMQXXXXXXXXXXXXXXXXXXXXXPGLMMAPAYQEQQEFPQXXXXXXXQYGVINPNGPDAGVLLGPGPPDGVMPYAKSHKARGSVPLPFDPTTMLPGWMGGSAGAXXXXXXXXXXXXXXXXXXXXXXXXSGFFXXMVPPGMKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKKEDGDGDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPAMLPPKADMLDAKEPGGGGGDMGGRPWVHYYNRDGDKWWRNTATGQRLSHDPYR 1850
            MQAHPMMTAAVQGGSWMAY+DREGRPCWHNTATNEWTY+LSNGXXXXXXXXXXXXXXXX          TVPAGMYAWPTAPAPAAVMVPTAVPQQLAGPYFYGADPGT  MAPA+MMPAAGPYDAVAAHQQQQMLYMQ XXXXXXXXXXXXXX      PGLMMAPAYQEQQEFPQ       QYGVI+PNGP+AGVLLGPGPPDG MPYAKSHKARGSVP+PFDPTTMLPGWMGGSAG XXXXXXXXXXXXXXXXXXXXXXXX    XX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKKEDGDG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   FPAMLPP+ADMLD KEPGGGGGD+GGR WVHYYNRDGDKWWRNT TGQRL+HDPYR
Sbjct:    1 MQAHPMMTAAVQGGSWMAYRDREGRPCWHNTATNEWTYDLSNGXXXXXXXXXXXXXXXXPAVATAAA--TVPAGMYAWPTAPAPAAVMVPTAVPQQLAGPYFYGADPGTVVMAPAIMMPAAGPYDAVAAHQQQQMLYMQQXXXXXXXXXXXXXX------PGLMMAPAYQEQQEFPQP------QYGVIDPNGPEAGVLLGPGPPDGFMPYAKSHKARGSVPVPFDPTTMLPGWMGGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKKEDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSFPAMLPPEADMLDVKEPGGGGGDLGGRHWVHYYNRDGDKWWRNTVTGQRLNHDPYR 431
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12402.1994.1 vs. uniprot
Match: D8LFW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW7_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 4.820e-50
Identity = 240/288 (83.33%), Postives = 244/288 (84.72%), Query Frame = 3 
Query:  996 MMAP---AYQEQQEFPQXXXXXXXQYGVINPNGPDAGVLLGPGPPDGVMPYAKSHKARGSVPLPFDPTTMLPGWMGGSAGAXXXXXXXXXXXXXXXXXXXXXXXXSGFFXXMVPPGMKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKKEDGDGDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPAMLPPKADMLDAKEPGGGGGDMGGRPWVHYYNRDGDKWWRNTATGQRLSHDPYR 1850
            MMAP   AYQEQQEFP XXXXX  QYGVINPNGPDAGVLLGPGPPDGVMPY+KSHKARGSVPLPFDPTTMLP WMGGSAGAXXXXXXXXXXXXXXXXXXXXXXXX    XX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       FPAMLPP+ DMLD KEPGGGGGD+GG PWVHYYNRDGDKWWRNT TGQRL+HDPYR
Sbjct:    1 MMAPPAAAYQEQQEFPYXXXXX--QYGVINPNGPDAGVLLGPGPPDGVMPYSKSHKARGSVPLPFDPTTMLPAWMGGSAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARSPSSFPAMLPPETDMLDVKEPGGGGGDLGGGPWVHYYNRDGDKWWRNTVTGQRLNHDPYR 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12402.1994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT46_9PHAE7.820e-13587.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFW7_ECTSI4.820e-5083.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12402contigEcto-sp13_S_contig12402:905..4836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1853
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_005230.1
Cds size1347
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462660.1999683-CDS-Ecto-sp13_S_contig12402:904..21681681462660.1999683-CDS-Ecto-sp13_S_contig12402:904..2168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12402 905..2168 -
1681462660.2086937-CDS-Ecto-sp13_S_contig12402:2684..27671681462660.2086937-CDS-Ecto-sp13_S_contig12402:2684..2767Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12402 2685..2767 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462660.2167037-UTR-Ecto-sp13_S_contig12402:2767..28431681462660.2167037-UTR-Ecto-sp13_S_contig12402:2767..2843Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12402 2768..2843 -
1681462660.2246249-UTR-Ecto-sp13_S_contig12402:4406..48361681462660.2246249-UTR-Ecto-sp13_S_contig12402:4406..4836Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12402 4407..4836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12402.1994.1prot_Ecto-sp13_S_contig12402.1994.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12402 905..2767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12402.1994.1

>prot_Ecto-sp13_S_contig12402.1994.1 ID=prot_Ecto-sp13_S_contig12402.1994.1|Name=mRNA_Ecto-sp13_S_contig12402.1994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=449bp
MQAHPMMTAAVQGGSWMAYQDREGRPCWHNTATNEWTYNLSNGNGDGGGG
QPQMMTYGYPAIATAAAAATVPAGMYAWPTAPAPAAVMVPTAVPQQLAGP
YFYGADPGTAAMAPAMMMPAAGPYDAVAAHQQQQMLYMQQMQQMQQMQQM
QQMQQMQPPQPGLMMAPAYQEQQEFPQPQQQQQQQYGVINPNGPDAGVLL
GPGPPDGVMPYAKSHKARGSVPLPFDPTTMLPGWMGGSAGAAAAAGGAAA
AGGAGAAGEGEGGGLSGFFGGMVPPGMKPGGVDKKGGKKSKKGKEEEEEE
EEEEEQKKGDDSGEGETEPATSAATPPPTVVDDDTDGGGDKKEDGDGDSG
GDGDGTSDGGGDDVGEEVVADSAAAATAAAGIAAAVARSPSSFPAMLPPK
ADMLDAKEPGGGGGDMGGRPWVHYYNRDGDKWWRNTATGQRLSHDPYR*
back to top

mRNA from alignment at Ecto-sp13_S_contig12402:905..4836-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12402.1994.1 ID=mRNA_Ecto-sp13_S_contig12402.1994.1|Name=mRNA_Ecto-sp13_S_contig12402.1994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3932bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12402:905..4836- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGACTCTCTGCTCTGTATTGGTGCACACGCACACCGGCCTGTGTTTTA
GGCGAGGCAACAACTGGTTATTCTCGTGTGGTGTATTCGCGCTCTGCGAG
AAGTGTACGCGTTGCCTCTGAACAGGAGCGCACACACGCAGCAGTCGGCA
CGAAACAAAGAAAACGTTTCGCGACAGGGAGGGAGAGAGAGAGAGAGAGG
CCTCACGGGCTGCATGCTGTCCCTCGTTCCCCGAACAAGCTGAGCAAGTT
CCGGCTGTCATCGTCCGTGTAACTGCACTGCAGGTGCAAACTTGGAACAC
TACTGCTGTATACACAGCTGAACGGTCCTGGTTCACGGAGGAAGTTTTGA
GCCGGGTTCAACTGCGGGGGGAGGCAGCACACGCCTCTTGATCAGCAGCA
GCAGGCGTCAAACAGCATACAGGGGAGAAGGTGAGAAATACCGACATGGC
TGCATGTTGCCGGTTTACCGCCGGTTTACCGGTCATTTGGGGTACCCGCT
GTCGTCATACAACAAGGTCTGCTATCTCCGTTTTTCGACGAGTTTGTGAG
CAAGGGATGTTCGCGTGCACCGTAGCTTGCTCCCCCCCTTGATGCACCTG
ATATATACGACTGGCCGAGAAAAAATTCCCAAGGCGTTACGTATTTAGAA
CGAAGAAGGAGCGCTCGGTAGCGGACCGCAAGAACAAAACCTGTGTTGGT
GGTACAGTAGAGGCTACTACACGTTGCTCTCGGTCATGAATAACGACGAA
ATAAAAAACAGACCACCGCCCAGCGCGAGCCGTATATCCAGCCGAGCCGG
TGTTTTTTATCTCCCGCTCACTGCTGGAAAGACTTCCACACAATCCCTGC
CGTCGATGTTGAGTGCCATGTATGGAACGGGCTTCTTACAACCGGTTGTC
CGGCCGGCTCACTTCAAATCATCGCGTCAGCCCGCAAATCAGGTGTTTAC
TATATCACTCAGCACTTCGAAGTCTCCTTCCTGAGCGCATATAAGTCGAA
GTTTTTCCGACCACAGCAGCCCTAGCATTGAAACACTGCTGCTGAGGCTG
TGCCGCTCTAAACAAAGGCAGCGCGGGCATGCCGTAAGGTACGAGCACAC
CGATTGACAAGTAGGTCCGGACAAAATTACAAGTCAATATTTCTCCCCCA
GGGCGGTGATCATCGATGAGTCACACTCCTACGAGCAAGGGATACGTTGA
AAGCTTAGGCGATGGATTCGTTACCAACTTATACTCAGACTCTTTATCTG
TGGAGGAGAGATGAATTGCTTGTGTCAAATCATAAGTATGCGTAGGATAC
AAAAAGAGGCTGGAAAGGGTCCGTGTTCACAGGTGAGCACATGAATACAG
CAGCAGCGAGTGCCGAATTAGACGGATATTTCTATAGCAGCAGTGTCCGG
TGCAAGGCTCCCAATAGTGTGCATAAGTGTACTGAATTGTCCTGAACGGA
GACGGCCAGACGCACCGCAGTCTTGTTGCGGGCGACTGCTGCCGCAGGTT
GCGGGAGACACCTCACCCCTTGAACCGATTGTCAACCTCGGTTAATCCCC
GACGAAGAGGATGTCAACACAATATACCAAACGATGGGTTTTCGGTCAAG
ATGTCCAAAGAGGCAGATGGTTTCAACGCCGCTAGCCAGTTTTTTTGGCA
CCGCCACTGGTTGTGCCTCAGAGGGAATCGGGCATGTGGTGGCATGAGCG
AAGTGCGGTATCGCGGTGACACATGATCGCGAGGCTACCTTCGCTGCTGC
AGTATATGTAGCCCTCGTAGACATATATGCAGGCCACAAGGTGCGGAGTT
ATTTATTCACCGAAGAAAAAGGGTCCAATCGACGAGACACACACGAAACG
GACGACACGTTTGTTATCATCATGCCGAAGCCCGCCGCGTGCTGTTCGTC
TCGATAGTCCCCACGCCCCTCCCCCCCCCTGCCGTCTCTTTCCCGTCTCA
CGTCTCCGCCTCTTTGTGCGTTTCGTGGCCGCTCGCACCGCAGTACCGCC
CAAGACCGGTGTATAAAAGCTACCCGAGGCGTTCTTTCTCGCTTTACGAC
AAGAAAAGGAGAAGACGAGATGCAGGCGCATCCGATGATGACTGCTGCTG
TGCAGGGCGGGTCGTGGATGGCTTATCAGGATCGCGAAGGCCGTCCTTGC
TGGTGAGATGATGATGATGATGATGATGATGATGGTGATGGTGGTGGTGG
TGGTGATAATGATGATGAGTACTACCGAGTTTACTTCTGCCTGTCCTCTT
CGTTTTTTTTTCTTGAGGTGTCGGTATTATTCTGTCCTGCTTCTGTTGTA
TGCCTTCTTGCGTCTCTGCTGTGTGTGAAAGTATACTTGTGCTTACGAGC
TCTCCAGGTTCGGCTTCAGGTGCGATACAACCACAGCAGTGGTAGGATGA
CGGATGTCGTGAGTCGCATCCACTGCGGCTCGATGTTCGATCTCTTGCCT
GTTTGCCGTGTGCTTGCCCGGAGCGGCAAGATGGGTGGAAGGGCACAGCG
CAATCCAGTGGCCTCGCACGTTAATTGTTGCCCCGCGCCCGCCTTTCCAC
CTTGCCGCTGCGCGGGGTGTGCCTGGATCCCACAGCAGCAGCAGCAGTGT
TGACTACGCCTTCCGCACGCGTTGACACAAGAACCCCTTTCTTTTCTCGA
CTATTCTTCCCTCACCAGGCATAACACGGCCACCAACGAGTGGACGTACA
ACCTCTCCAACGGCAACGGCGATGGCGGCGGTGGCCAACCGCAGATGATG
ACCTACGGCTACCCCGCCATTGCCACCGCCGCCGCCGCCGCCACCGTGCC
TGCCGGAATGTACGCCTGGCCAACGGCACCTGCACCGGCGGCGGTGATGG
TACCGACCGCCGTCCCACAGCAACTGGCGGGGCCCTACTTCTACGGCGCG
GACCCCGGAACCGCGGCCATGGCCCCCGCGATGATGATGCCCGCTGCGGG
CCCGTACGACGCGGTCGCGGCGCACCAGCAGCAGCAGATGCTGTACATGC
AGCAGATGCAGCAGATGCAGCAGATGCAGCAGATGCAGCAGATGCAGCAG
ATGCAACCACCACAGCCCGGGTTGATGATGGCGCCGGCGTACCAGGAACA
GCAGGAGTTCCCGCAGCCGCAGCAGCAGCAGCAGCAGCAGTACGGCGTGA
TCAACCCGAACGGGCCCGACGCCGGGGTGTTGCTCGGTCCCGGACCCCCC
GACGGGGTCATGCCGTACGCCAAGAGCCACAAGGCACGCGGCTCCGTCCC
ACTGCCGTTCGACCCGACGACGATGCTACCGGGGTGGATGGGCGGGTCCG
CGGGAGCGGCGGCGGCGGCTGGCGGGGCGGCGGCGGCGGGGGGCGCCGGC
GCTGCCGGAGAGGGGGAAGGAGGAGGGCTGTCCGGATTTTTCGGGGGAAT
GGTGCCCCCGGGCATGAAGCCGGGCGGCGTCGACAAGAAGGGTGGCAAGA
AGTCAAAGAAGGGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAG
CAGAAGAAGGGGGACGATTCCGGGGAGGGGGAGACGGAGCCGGCCACCTC
TGCCGCAACCCCGCCGCCCACGGTCGTCGACGACGACACCGACGGGGGCG
GCGACAAGAAGGAGGACGGCGACGGAGACAGCGGCGGAGACGGAGACGGC
ACCAGCGATGGTGGCGGCGACGACGTCGGAGAGGAGGTCGTCGCGGACTC
CGCCGCCGCCGCCACCGCCGCCGCCGGCATCGCCGCGGCCGTCGCCCGCT
CCCCCAGCAGCTTCCCGGCGATGCTGCCCCCGAAGGCCGACATGCTCGAC
GCGAAGGAACCGGGGGGGGGGGGGGGGGACATGGGTGGGCGTCCTTGGGT
TCACTACTACAACAGGGACGGGGATAAGTGGTGGAGAAACACCGCCACCG
GGCAGCGGCTCAGCCACGACCCGTACAGATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12402:905..4836-

>mRNA_Ecto-sp13_S_contig12402.1994.1 ID=mRNA_Ecto-sp13_S_contig12402.1994.1|Name=mRNA_Ecto-sp13_S_contig12402.1994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1347bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12402:905..4836- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGCGCATCCGATGATGACTGCTGCTGTGCAGGGCGGGTCGTGGAT
GGCTTATCAGGATCGCGAAGGCCGTCCTTGCTGGCATAACACGGCCACCA
ACGAGTGGACGTACAACCTCTCCAACGGCAACGGCGATGGCGGCGGTGGC
CAACCGCAGATGATGACCTACGGCTACCCCGCCATTGCCACCGCCGCCGC
CGCCGCCACCGTGCCTGCCGGAATGTACGCCTGGCCAACGGCACCTGCAC
CGGCGGCGGTGATGGTACCGACCGCCGTCCCACAGCAACTGGCGGGGCCC
TACTTCTACGGCGCGGACCCCGGAACCGCGGCCATGGCCCCCGCGATGAT
GATGCCCGCTGCGGGCCCGTACGACGCGGTCGCGGCGCACCAGCAGCAGC
AGATGCTGTACATGCAGCAGATGCAGCAGATGCAGCAGATGCAGCAGATG
CAGCAGATGCAGCAGATGCAACCACCACAGCCCGGGTTGATGATGGCGCC
GGCGTACCAGGAACAGCAGGAGTTCCCGCAGCCGCAGCAGCAGCAGCAGC
AGCAGTACGGCGTGATCAACCCGAACGGGCCCGACGCCGGGGTGTTGCTC
GGTCCCGGACCCCCCGACGGGGTCATGCCGTACGCCAAGAGCCACAAGGC
ACGCGGCTCCGTCCCACTGCCGTTCGACCCGACGACGATGCTACCGGGGT
GGATGGGCGGGTCCGCGGGAGCGGCGGCGGCGGCTGGCGGGGCGGCGGCG
GCGGGGGGCGCCGGCGCTGCCGGAGAGGGGGAAGGAGGAGGGCTGTCCGG
ATTTTTCGGGGGAATGGTGCCCCCGGGCATGAAGCCGGGCGGCGTCGACA
AGAAGGGTGGCAAGAAGTCAAAGAAGGGGAAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAAGAGCAGAAGAAGGGGGACGATTCCGGGGAGGGGGAGAC
GGAGCCGGCCACCTCTGCCGCAACCCCGCCGCCCACGGTCGTCGACGACG
ACACCGACGGGGGCGGCGACAAGAAGGAGGACGGCGACGGAGACAGCGGC
GGAGACGGAGACGGCACCAGCGATGGTGGCGGCGACGACGTCGGAGAGGA
GGTCGTCGCGGACTCCGCCGCCGCCGCCACCGCCGCCGCCGGCATCGCCG
CGGCCGTCGCCCGCTCCCCCAGCAGCTTCCCGGCGATGCTGCCCCCGAAG
GCCGACATGCTCGACGCGAAGGAACCGGGGGGGGGGGGGGGGGACATGGG
TGGGCGTCCTTGGGTTCACTACTACAACAGGGACGGGGATAAGTGGTGGA
GAAACACCGCCACCGGGCAGCGGCTCAGCCACGACCCGTACAGATGA
back to top