mRNA_Ecto-sp13_S_contig8537.19940.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8537.19940.1
Unique NamemRNA_Ecto-sp13_S_contig8537.19940.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8537.19940.1 vs. uniprot
Match: A0A6H5JI06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI06_9PHAE)

HSP 1 Score: 499 bits (1284), Expect = 1.570e-171
Identity = 254/277 (91.70%), Postives = 258/277 (93.14%), Query Frame = 3
Query:   75 HHAALPCARQGERERDHGRMKSNSSCRSAAFLALLALIRAAAGFTTSLLSSLASSHASVSRTPPQRHSTKTGRRSCSMSEGQLGVGFDFGTSGVRAVVIDVEGEVKFDSSLRWAAPDDPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDVHDPCRVTRGPRMYSYNTLTEPISMEAARRALGALEQVAPDKHTTLSGTSALMKLVCWHLESPIAQEEAFSHQADYVAAHARGARGPGSIVSDWNNALKAGFDVETLRWPGWLLESKLGE 905
            H     C R GERERDHGRMK+N  CRSAAFL L ALI AAAGFTT+LLSS ASSH  VSR  PQRHSTKTGRRSCSMSEGQLGVGFDFGTSGVRAVVIDVEGEVKFDSSLRWAAPDDPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVD+HDPCRVTRGPRMYSYNTLTEPISMEAARRALGALEQ+APDKHTTLSGTSALMKLVCWHLESPIA EEAFSHQADYVAAHARGARGPGSIVSDWNNALKAGFDVETLRWPGWLL SKLGE
Sbjct:   66 HPCRRLCRRSGERERDHGRMKANGGCRSAAFLPLFALICAAAGFTTTLLSSPASSHGCVSRPLPQRHSTKTGRRSCSMSEGQLGVGFDFGTSGVRAVVIDVEGEVKFDSSLRWAAPDDPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDIHDPCRVTRGPRMYSYNTLTEPISMEAARRALGALEQIAPDKHTTLSGTSALMKLVCWHLESPIAPEEAFSHQADYVAAHARGARGPGSIVSDWNNALKAGFDVETLRWPGWLLGSKLGE 342          
BLAST of mRNA_Ecto-sp13_S_contig8537.19940.1 vs. uniprot
Match: D7FVM2_ECTSI (Carbohydrate kinase, FGGY n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM2_ECTSI)

HSP 1 Score: 401 bits (1031), Expect = 8.710e-136
Identity = 197/200 (98.50%), Postives = 199/200 (99.50%), Query Frame = 3
Query:  306 MSEGQLGVGFDFGTSGVRAVVIDVEGEVKFDSSLRWAAPDDPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDVHDPCRVTRGPRMYSYNTLTEPISMEAARRALGALEQVAPDKHTTLSGTSALMKLVCWHLESPIAQEEAFSHQADYVAAHARGARGPGSIVSDWNNALKAGFDVETLRWPGWLLESKLGE 905
            MSEGQLGVGFDFGTSGVRAVVIDVEGEVKFDSSLRWAAPDDPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDVHDPCRVTRGPRMYSYNTLTEPISMEAARRALGALEQ+APDKHTTLSGTSALMKLVCWHLESPIA EEAFSHQADYVAAHARGARGPGSIVSDWNNALKAGFDV+TLRWPGWLLESKLGE
Sbjct:    1 MSEGQLGVGFDFGTSGVRAVVIDVEGEVKFDSSLRWAAPDDPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDVHDPCRVTRGPRMYSYNTLTEPISMEAARRALGALEQIAPDKHTTLSGTSALMKLVCWHLESPIAPEEAFSHQADYVAAHARGARGPGSIVSDWNNALKAGFDVDTLRWPGWLLESKLGE 200          
BLAST of mRNA_Ecto-sp13_S_contig8537.19940.1 vs. uniprot
Match: A0A836CG13_9STRA (Carbohydrate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG13_9STRA)

HSP 1 Score: 215 bits (547), Expect = 3.800e-63
Identity = 117/198 (59.09%), Postives = 139/198 (70.20%), Query Frame = 3
Query:  306 MSEG-QLGVGFDFGTSGVRAVVIDVEGE-VKFDSSLRWAAP---DDPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDVHDPCRVTRGPRMYSYNTLTEPISMEAARRALGALEQVAPDKHTTLSGTSALMKLVCWHLESPIAQEEAFSHQADYVAAHARGARGPGSIVSDWNNALKAGFDVETLRWPGWL 884
            MS G QL +GFD+GTSG RAVVID   + V+  + ++W A    D P  WL AA  L+ DVP A + R++R+C SGTSASCLLV+  DP  VTRGP MY+YNTL E  S  AA     ALE+VAP  HTTLSGTSALMKL+ WH E+P+   EA +HQADYV+A+ RG  G   IV+DWNNALK GFDVE LRWP WL
Sbjct:    1 MSSGPQLSIGFDYGTSGARAVVIDSATKTVQHVADVKWTAEEGYDSPQAWLSAAAALLDDVPAAAKARMARICVSGTSASCLLVERSDPLAVTRGPAMYNYNTLRE--SPAAAXXXXXALERVAPPLHTTLSGTSALMKLLTWHAEAPLGAHEALAHQADYVSAYMRGGAGA-EIVTDWNNALKTGFDVEQLRWPDWL 195          
BLAST of mRNA_Ecto-sp13_S_contig8537.19940.1 vs. uniprot
Match: W7TDC3_9STRA (Carbohydrate fggy n=4 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDC3_9STRA)

HSP 1 Score: 149 bits (377), Expect = 6.410e-38
Identity = 90/213 (42.25%), Postives = 126/213 (59.15%), Query Frame = 3
Query:  309 SEGQLGVGFDFGTSGVRAVVIDVEGEVK--FDSSLRWA---APDDPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDVHDPCRVTRGPRMYSYNTLTEPISMEAARRALGALEQVAPDKHTTLSGTSALMKLVCWHLESPIAQEEAFSHQADYVAA-------HARGARGPGSIVSDWNNALKAGFDVETLRWPGW---LLESKLG 902
            S+ + G GFDFGTSGVR VV++          +S RW       D +EW  A   L+ D+P A+R R++RV  SGTSASC++V+  +   +TR PR+Y+++ L E    E  R+A   +   AP KH TLSGTS+LMK+V WHLE    ++E   HQAD+++A        A+  +     VSDWNN LK G+D+  L +PGW   LL+ +LG
Sbjct:   34 SKPRCGAGFDFGTSGVRLVVLEASETPTCVHQASFRWPHSQTVQDAEEWRLAMFRLLDDIPPAIRSRMARVAISGTSASCVVVNKANGA-ITRNPRLYNWDALRE--IPETGRKAQCLIADYAPAKHVTLSGTSSLMKVVSWHLEEAFHRDEVMLHQADFLSACLIHDTSTAKREQSCFPRVSDWNNMLKLGYDMSALAYPGWFSPLLDDRLG 243          
BLAST of mRNA_Ecto-sp13_S_contig8537.19940.1 vs. uniprot
Match: A0A4D9CXF7_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXF7_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.450e-37
Identity = 93/213 (43.66%), Postives = 127/213 (59.62%), Query Frame = 3
Query:  309 SEGQLGVGFDFGTSGVRAVVIDVEGEVK--FDSSLRWA---APDDPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDVHDPCRVTRGPRMYSYNTLTEPISMEAARRALGALEQVAPDKHTTLSGTSALMKLVCWHLESPIAQEEAFSHQADYVAA----HARGARGPGSI---VSDWNNALKAGFDVETLRWPGW---LLESKLG 902
            S+ + G GFDFGTSGVR VV++          +S RW       D +EW  A   L+ D+P A+R RV+RV  SGTSASC++V+  +   +TR PR+Y+++ L E    E  R+A   +   AP KH TLSGTS+LMK+V WHLE    ++E   HQAD+++A     A  A+   S    VSDWNN LK G+D+  L +PGW   LL+ +LG
Sbjct:   28 SKPRCGAGFDFGTSGVRLVVLEASETPTCVHQASFRWPHSQTVQDAEEWRLAMFRLLDDIPPAIRSRVARVAISGTSASCVVVNKANGA-ITRNPRLYNWDALRE--IPETGRKAKCLIADYAPAKHVTLSGTSSLMKVVSWHLEEAFHRDEVMLHQADFLSACLIHDASTAKREQSCFPRVSDWNNMLKLGYDMSALAYPGWFSPLLDDRLG 237          
BLAST of mRNA_Ecto-sp13_S_contig8537.19940.1 vs. uniprot
Match: A0A1Z5JKG9_FISSO (FGGY_C domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKG9_FISSO)

HSP 1 Score: 142 bits (359), Expect = 2.510e-35
Identity = 87/206 (42.23%), Postives = 115/206 (55.83%), Query Frame = 3
Query:  327 VGFDFGTSGVRAVVIDVEGEVK-----FDSSLRWAAP---DDPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDVHDPCRVTRGPRMYSYNTL--TEPISMEAARRALGALEQVAPDKHTTLSGTSALMKLVCWHLESPIAQEEAFSHQADYVA--------AHARGARGPGSIVSDWNNALKAGFDVETLRWPGWLLE 890
            VGFD GTSG R  +I    +          ++ W+     DDPD W+ A   L+ +   A    V+ +CFSGTSASCLL+D  +   VTR PRMY Y+     +PI      RAL  LE  AP +HTT S TS+L KL+ WH ++P+ ++EA +HQADY+A        A   G     S+ SDW+N LK G+DV  L WP WLL+
Sbjct:   32 VGFDLGTSGARISIIRPSNDSSSYQELHSDTVSWSDEKRYDDPDAWMSAVAILL-EGSAAYLSSVASICFSGTSASCLLIDRANAGAVTRRPRMYDYDVCHSVDPIY---GVRALTRLESFAPPQHTTRSPTSSLAKLLAWHEQTPLTKQEALAHQADYLALQFLSENKACGSGPSNFRSVSSDWHNCLKLGYDVRNLCWPSWLLD 233          
BLAST of mRNA_Ecto-sp13_S_contig8537.19940.1 vs. uniprot
Match: A0A7S0Q2T4_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q2T4_9EUKA)

HSP 1 Score: 133 bits (335), Expect = 4.340e-32
Identity = 79/202 (39.11%), Postives = 114/202 (56.44%), Query Frame = 3
Query:  318 QLGVGFDFGTSGVRAVVIDVEG-EVKFDSSLRWAAPD---DPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDVHDPC-RVTRG-PRMYSYNTLTEPISMEAARRALGALEQVAPDKHTTLSGTSALMKLVCWHLESPIAQEEAFSHQADYVAAHARGARGPGSIVSDWNNALKAGFDVETLRWPGWLLESKLGE 905
            +L +GFDFGTSG RAV++  +G  V   + ++W   +      +W+ A   L+  +P  LR RV+R+  SGTS++ L+ +       V RG PRMY ++   +    E   RAL  +   AP  H   + TS L K++ W  E+ +  +E  +HQADYVAA   G    G+  SDW+NALK GFDV +L +P WLL  +LGE
Sbjct:   32 RLALGFDFGTSGARAVLLAADGTRVGTSADVKWGERERLQTASDWVEALSELLEQIPRDLRARVARIGVSGTSSTVLICERESGSPSVCRGAPRMYDFSVAKQAPG-ECGARALNLIAAHAPPLHAARAATSTLAKVLAWDAEAALTADEVVAHQADYVAAQLCGRAPDGTFRSDWHNALKLGFDVSSLCYPTWLLAGELGE 232          
BLAST of mRNA_Ecto-sp13_S_contig8537.19940.1 vs. uniprot
Match: A0A7S2PKS0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PKS0_9STRA)

HSP 1 Score: 133 bits (334), Expect = 9.910e-32
Identity = 79/205 (38.54%), Postives = 110/205 (53.66%), Query Frame = 3
Query:  327 VGFDFGTSGVRAVVI--------DVEGEVKFDSSLRWAAPDDPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDVHDPCRVTRGPRMYSYNTLTEPISMEAARRALGALEQVAPDKHTTLSGTSALMKLVCWHLESPIAQE--------EAFSHQADYVAAHARG---ARGPGSIVSDWNNALKAGFDVETLRWPGWL 884
            +GFDFGTSG R  VI        +++ EV  DS +   + DD DEW+ A   L+  VP  + +    +C SGTSASC+LV+     +V+R PRMY Y+       + A  R    L + AP +HT  + TS+L KL+ WH E  + +         E  +HQAD++A H      +R    +VSDW+N LK G+DV  L WP WL
Sbjct:   45 IGFDFGTSGARISVINRNNDRAIEIDNEVHSDSIVWQKSCDDADEWINAMHLLLSRVPTEMLRDTKAICASGTSASCVLVEKATG-KVSRKPRMYDYDVGNSSFGLNAMDR----LGKYAPSRHTAKARTSSLAKLISWHEEEHLYENDDGTNDNAEVLAHQADFLAMHLMSHGTSRKNYEVVSDWHNCLKLGYDVRKLEWPSWL 244          
BLAST of mRNA_Ecto-sp13_S_contig8537.19940.1 vs. uniprot
Match: A0A7S1TVL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVL8_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.280e-29
Identity = 76/207 (36.71%), Postives = 107/207 (51.69%), Query Frame = 3
Query:  327 VGFDFGTSGVRAVVI----DVEGEVKFDSSLRWA--APDDPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDVHDPCRVTRGPRMYSYNTLTEPISMEAARRALGALEQVAPDKHTTLSGTSALMKLVCWHLESPIAQEEAFSHQADYVAA-----------HARGARGPGSIV--SDWNNALKAGFDVETLRWPGWLLE 890
            +G D GTSGVR + +    D    V     + W+  A    + W+     L+   P  + +  + V  SGTSA+ L++D H   RV R PRMY+Y      +S  A   A+  +E  AP  HT  + TS L KL+ WHLE+P++  +   HQAD+ A              + +  P  +V  SDW+NALK G+DVE LRWPGWLL+
Sbjct:   16 IGLDLGTSGVRLMAVRAAADSRRVVVHTDEVAWSDDAGARSETWVAGMQQLLARCPPDVLEATASVAVSGTSATALIIDEHG--RVKRAPRMYNYA-----VSGSAGDEAMRIIEARAPKGHTVRARTSTLAKLLAWHLEAPLSPTDRLVHQADFAATVLCAGGAPFDEQQQSSEDPRGLVFASDWHNALKLGYDVENLRWPGWLLD 215          
BLAST of mRNA_Ecto-sp13_S_contig8537.19940.1 vs. uniprot
Match: A0A0G4H317_VITBC (FGGY_C domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H317_VITBC)

HSP 1 Score: 126 bits (316), Expect = 2.880e-29
Identity = 79/209 (37.80%), Postives = 107/209 (51.20%), Query Frame = 3
Query:  330 GFDFGTSGVRAVVIDVEGEVKFDSSLRW--------------------AAPDDPDEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDVHDPCRVTRGPRMYSYNTLTEPISMEAAR--RALGALEQVAPDKHTTLSGTSALMKLVCWHLESPIAQEEAFSHQADYVAAHARGAR--GPGSIVSDWNNALKAGFDVETLRWPGWL 884
            G DFGTSG R  VID +    F  S+RW                    A   DP  WL     LM  VP+ +R+ +  +   GTSA+ LLVD     +VTRG R+Y+++ L E      A   RA    + V+P      S TS+ +K + W LE P+  +E  +HQ D+V A+ R +   GP  +V+DWNNALK G+D ETL +P WL
Sbjct:   18 GIDFGTSGCRISVIDGDERELFSDSVRWHQLAASASSSTPTRQPHTDGALAADPSLWLAGLHRLMAAVPVEMRRSMRAIAVDGTSATVLLVDTTTG-KVTRGCRLYNWSALDEDEDEAPAEGPRAWAMAKAVSPPGSPACSPTSSFVKCLTWLLERPLDADEKIAHQCDFVLAYLRSSEEGGPMEVVTDWNNALKIGYDCETLSYPPWL 225          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8537.19940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI06_9PHAE1.570e-17191.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM2_ECTSI8.710e-13698.50Carbohydrate kinase, FGGY n=1 Tax=Ectocarpus silic... [more]
A0A836CG13_9STRA3.800e-6359.09Carbohydrate kinase n=1 Tax=Tribonema minus TaxID=... [more]
W7TDC3_9STRA6.410e-3842.25Carbohydrate fggy n=4 Tax=Nannochloropsis gaditana... [more]
A0A4D9CXF7_9STRA2.450e-3743.66RING-type domain-containing protein n=1 Tax=Nannoc... [more]
A0A1Z5JKG9_FISSO2.510e-3542.23FGGY_C domain-containing protein n=2 Tax=Fistulife... [more]
A0A7S0Q2T4_9EUKA4.340e-3239.11Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2PKS0_9STRA9.910e-3238.54Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1TVL8_9STRA1.280e-2936.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0G4H317_VITBC2.880e-2937.80FGGY_C domain-containing protein n=2 Tax=Vitrella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8537contigEcto-sp13_S_contig8537:2113..6037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score405.2
Seed ortholog evalue2.3e-110
Seed eggNOG ortholog2880.D7FVM2
Model size905
Hectar predicted targeting categorychloroplast
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006793,GO:0006796,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019150,GO:0019200,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044262,GO:0044424,GO:0044444,GO:0044464,GO:0046835,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Exons6
EggNOG free text desc.FGGY family of carbohydrate kinases, C-terminal domain
EggNOG OGs2QVMB@2759,COG1070@1
Ec32 ortholog descriptioncarbohydrate kinase, FGGY
Ec32 orthologEc-01_009410.1
Cds size774
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8537.19940.1prot_Ecto-sp13_S_contig8537.19940.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8537 2244..6037 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464124.0623984-UTR-Ecto-sp13_S_contig8537:2112..22431681464124.0623984-UTR-Ecto-sp13_S_contig8537:2112..2243Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8537 2113..2243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464124.073086-CDS-Ecto-sp13_S_contig8537:2243..24611681464124.073086-CDS-Ecto-sp13_S_contig8537:2243..2461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8537 2244..2461 +
1681464124.0839524-CDS-Ecto-sp13_S_contig8537:3573..37141681464124.0839524-CDS-Ecto-sp13_S_contig8537:3573..3714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8537 3574..3714 +
1681464124.0944142-CDS-Ecto-sp13_S_contig8537:4164..42371681464124.0944142-CDS-Ecto-sp13_S_contig8537:4164..4237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8537 4165..4237 +
1681464124.1050854-CDS-Ecto-sp13_S_contig8537:4653..47731681464124.1050854-CDS-Ecto-sp13_S_contig8537:4653..4773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8537 4654..4773 +
1681464124.115425-CDS-Ecto-sp13_S_contig8537:5030..51471681464124.115425-CDS-Ecto-sp13_S_contig8537:5030..5147Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8537 5031..5147 +
1681464124.1256592-CDS-Ecto-sp13_S_contig8537:5932..60371681464124.1256592-CDS-Ecto-sp13_S_contig8537:5932..6037Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8537 5933..6037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8537.19940.1

>prot_Ecto-sp13_S_contig8537.19940.1 ID=prot_Ecto-sp13_S_contig8537.19940.1|Name=mRNA_Ecto-sp13_S_contig8537.19940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=258bp
MKSNSSCRSAAFLALLALIRAAAGFTTSLLSSLASSHASVSRTPPQRHST
KTGRRSCSMSEGQLGVGFDFGTSGVRAVVIDVEGEVKFDSSLRWAAPDDP
DEWLRAADTLMGDVPLALRKRVSRVCFSGTSASCLLVDVHDPCRVTRGPR
MYSYNTLTEPISMEAARRALGALEQVAPDKHTTLSGTSALMKLVCWHLES
PIAQEEAFSHQADYVAAHARGARGPGSIVSDWNNALKAGFDVETLRWPGW
LLESKLGE
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mRNA from alignment at Ecto-sp13_S_contig8537:2113..6037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8537.19940.1 ID=mRNA_Ecto-sp13_S_contig8537.19940.1|Name=mRNA_Ecto-sp13_S_contig8537.19940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3925bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8537:2113..6037+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTTGGATTGTAGGCGCTAGGCTGCCGTACCTCTGACTTCCGTTCACGC ACGCGAACGTTTTTACCCACACGCCACCACGCAGCGCTCCCTTGCGCGCG GCAGGGAGAGAGAGAGCGAGACCACGGGCGAATGAAGTCCAACAGCAGCT GCCGAAGTGCAGCATTCCTCGCGCTGCTGGCCCTGATTCGCGCCGCCGCT GGCTTTACAACATCGTTGTTGTCATCTCTGGCAAGCTCCCATGCATCTGT TTCTCGCACGCCGCCACAGCGACATAGCACCAAAACCGGGAGAAGGAGCT GCAGCATGAGCGAGGGACAACTCGGAGTGGGTTTCGACTTCGGCACAAGG TACGGGTTGGGTGTTGGGCGCTCTAAGAAGGAGGCGGCAATGTATACGGC GTGTGCCGTGTGCCACTTGCGTCCAAAACAGTGCACGTACGCGGCATGGA GCACAGAGGCGCCGCGGGCGAGAGCAACCAGCCTTGATACCAGAAGAGCC AGCTCGAAAGCTGCTTGTGACACGGGTTCTTCGCGCTGCACATACGTACA GCAGTAGGGGACTTGAAAGTCATCTTTGTTTTGTGCAAGGGTTCCTACAT TCAAAATTAAAGATATGCATCATGCGCAGCATTCTCATTTTTTAGAGCAA GGTACATGATCAAAATGCGTACGGATTGCCGCATCTAGCCGGTGCTGACG CAACTTTTTTATCGCGGACAATGTCAATGGGAGCGGTAGCGCAGCAGGCA GCCGTTGCTGTTGGAGTGAACTAGGAGGGTTAGGAGTGAGGAGAAGAAGG AATAATCTACACGTGTGCGATTTCTTGTGGTGTGTGCTATTGTTTGTTGT TGCGTAGCGTACGAGGCGGCTATTCTCTGTACAAATGCTGTGAGGGCATC AGGTTGTGTATGACTTGTACCGCATACCCTGTGCCTTGTTAGGCTTTGGT CCTAGAGGTTACACCCATTGGATGTCCGCTGAACACTGGATAGATAGTTG GAACACCCTGGAGCAAGACAACATACGAACTACTTAATTTGGAATTTTTC CACCTGGAGTTTACAAGTGGATTTTTCTCCGTGGTGCATCACACACGAAG CGACTTGTTCGCTGTTTTGTGGCGCGCCTGCTTTGTACGAGCGTGCAAAG ACCGAAGTCCCTTGCGGTACTTGCATACTTGTGCCTGCCGTTTGTGAAAT ATTTGGTAAGCCGGGACGCCGAATCAAAACCCATGGCGGATGACCAGCTT CTACAGTAGTTCATCCCTTGTGAAACGTTGCCTTGGCTGGCGACATACAT CGCTCCCTGCCGGCGTTGCAGGGATGCGAGGTCAAATAGTCTACAACGAT GACTACGCCATGCGTTTACACGAGTACACCCCCTTCCCTCCCTTCCAGCT AGGGCCCCGTATCCTAGCCCCACCCCTATTTTCTTTCGTTGTCGTTCGGA TCCCCTACCAGCGGCGTTCGAGCCGTGGTGATCGATGTCGAAGGCGAGGT GAAGTTCGATTCCTCGCTACGGTGGGCTGCACCGGACGACCCTGACGAGT GGCTGAGGGCTGCGGACACGCTGATGGGAGACGTGCCGCTAGCTCTGCGC AAGTGAGAGAGAGGAAGTGCGAACAACGCGTGGAACCCGACAACCTTGGT CGGTGTTATCGTTGTTTGTTGTTGTTGAGGCGGTTGGTTGTGATGTTGTT GGTGCTTGGTGGGCTCCAGCGCGGCCGCATGCTGGCAAAGCCGGGGTGTT TACGTATGACGGACGGTGTCCATGGAATAATCGTGCCTCCCGCTTCGCGA ACGCAAGATACAAAAGAAGACGCAAGCTAACCGACGCGGACACGCCATGC GAGACTACAGCCTGCCTACAATCACGTCAACACACAGGTACATGAAGTAA ATCGTAATCGTTCTGCGCACCCCTCCCCGTCCCGGCCCACATAAACGCCT GCGCCATTACATGTGTTTTAGATTCAAATCTTCATTGATTGTCACGACGC GATTTCGAAGTCTTGCCCCCCCCCTCCCCCCCACCATGTGGTGATGTGAT AGGCGAGTGTCCAGGGTGTGCTTCAGCGGCACGTCGGCGTCCTGTCTTTT GGTTGACGTCCATGACCCCTGCAGAGTGAGTGAGTGTGAAAGAGGGGAGA GAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGATGCAAGCGCCGTATTTGTAGCACGTTTTTTCTCAAGGGAC AGGTGCCTGGTTGCCGTGCTGCGGAAATAATTCAGGCCGCTGCTGTAGGT TTAAAAAGAAGGTCGGCGCGTTATCAATTTGTGATGCGTTGAACTTAAGC ACACGGCACCAGCAGCTGTTGCCTTCTGTTCTTTCCAAACGACGTATCAA GTTGGAAGCTCTTGCGTTGTCGCGCGGGTTAACAAGTTGTCGATGAACGC GCCTCTGTTCCCTCCCCCCTCTCTCTCCTTCTCTCCACCTTTGTTCGGAA ACAATAAAACCAAAACACGTGGCGAAATTTGGGCGAGCAAGGTCACGCGA GGCCCCCGGATGTACTCGTACAACACGCTGACGGAGCCCATTTCGATGGA GGCGGCCCGAAGAGCTCTTGGTGCACTGGAACAGGTCGCGCCGGACAAGC ACACCACGCTCGTGAGAAGTTGGTTGTGGTGTGGTGCATATGCGTCGACA ACACTGAGCAGTAGCGTTGAGATGAGTATGATTTGGTAGCACAGGCACGA ACGGAGCACGTGGATCCACACCGCCGCCTTTTTGGCCTCTTTCGTTTTTT TCCACAGAGAGGGGATTTTGTTCCTCCACCAGCGTTACATCTGCCAGAAG ATAGGATATCTAGTAACACCGTTGTGCTTTCCTTGTTTTTTTGGCTGGTA CTGTTTGCTGTTCGGCAGAGCGGGACCTCCGCGCTGATGAAGCTGGTGTG CTGGCACCTCGAGAGCCCGATCGCGCAGGAGGAGGCGTTTTCCCACCAGG CGGATTACGTCGCGGCGCACGCCAGGGGAGCGAGGGTGAGAGAGGGGGGG GGGGGGGGGGGGGGGCGGGGAATGTACAGGGGGGGATCCCACCCTCTTGT CCGCGTGCGGCCGCTCAAGACGTCAGGCCTCCGCACGACGTTGTGGGTTC TCCTATACACGCATGGCACCGTACGTAGCGATCAGGTGCCTTCGTATAGG CAAGGCTTTAATCTCGTGTTTCAGTCGAAGCGGCAGCGTCGAAGAGCATT CGTTCGAGGGCCGTACAGCAGTACCTTGCCATCGGCAAACCCTGTTGCCG TGGAGGGGGGGGGGGGGTACGCTGTTGCGACTTGAAAGTGTTGAGGCAAT GACACACACGCAGAAAACGGGTGTGCCCTCGGCTGACGCGCTCTGCTGAT GTTTGTGGCGGTTTCCAGATGGTATTTTTTTTTGTTTTTCATGTGGCGTT GTTGTTTTGCCGCCGCCAGCAAGCACGTTGTTGTTTTTGGTCCTTGATAT TTTTTTTTGTCCGGCGGCCGCGGCATTCCACGCGAGTGACCGAACAACAG TGCGTCTCCGACCACGGCGTACCGCTGACCCATGCAACAACTCAATTGGC CTGTGTTTCGGGCTGTTGAACAACGGTCACCGATTGGTGCAAAACTTCGA CTTGTCTTGAGCTTTTTTGTTTGTGTAGATTATACTTCCGTTCGGTGCGA TCCTTGATAGATTGGTTACCCCGTGTGGTAGGTAGATCACAGGAAGGAGG CTCGTCGCACGCGGGTCAACTTCCACGGTAAGCGTAAGTCATGCTATGTA CCGCTCGTGCACGTAAGCAGGGCCCGGGTTCGATCGTTTCTGACTGGAAC AACGCCCTCAAGGCGGGGTTTGACGTGGAGACGCTGCGATGGCCCGGTTG GTTGCTGGAGAGCAAGCTCGGCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8537:2113..6037+

>mRNA_Ecto-sp13_S_contig8537.19940.1 ID=mRNA_Ecto-sp13_S_contig8537.19940.1|Name=mRNA_Ecto-sp13_S_contig8537.19940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8537:2113..6037+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTCCAACAGCAGCTGCCGAAGTGCAGCATTCCTCGCGCTGCTGGC
CCTGATTCGCGCCGCCGCTGGCTTTACAACATCGTTGTTGTCATCTCTGG
CAAGCTCCCATGCATCTGTTTCTCGCACGCCGCCACAGCGACATAGCACC
AAAACCGGGAGAAGGAGCTGCAGCATGAGCGAGGGACAACTCGGAGTGGG
TTTCGACTTCGGCACAAGCGGCGTTCGAGCCGTGGTGATCGATGTCGAAG
GCGAGGTGAAGTTCGATTCCTCGCTACGGTGGGCTGCACCGGACGACCCT
GACGAGTGGCTGAGGGCTGCGGACACGCTGATGGGAGACGTGCCGCTAGC
TCTGCGCAAGCGAGTGTCCAGGGTGTGCTTCAGCGGCACGTCGGCGTCCT
GTCTTTTGGTTGACGTCCATGACCCCTGCAGAGTCACGCGAGGCCCCCGG
ATGTACTCGTACAACACGCTGACGGAGCCCATTTCGATGGAGGCGGCCCG
AAGAGCTCTTGGTGCACTGGAACAGGTCGCGCCGGACAAGCACACCACGC
TCAGCGGGACCTCCGCGCTGATGAAGCTGGTGTGCTGGCACCTCGAGAGC
CCGATCGCGCAGGAGGAGGCGTTTTCCCACCAGGCGGATTACGTCGCGGC
GCACGCCAGGGGAGCGAGGGGCCCGGGTTCGATCGTTTCTGACTGGAACA
ACGCCCTCAAGGCGGGGTTTGACGTGGAGACGCTGCGATGGCCCGGTTGG
TTGCTGGAGAGCAAGCTCGGCGAG
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