mRNA_Ecto-sp13_S_contig8536.19938.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8536.19938.1
Unique NamemRNA_Ecto-sp13_S_contig8536.19938.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8536.19938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8536contigEcto-sp13_S_contig8536:4914..5556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size645
Hectar predicted targeting categoryother localisation
Exons1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464123.9801776-CDS-Ecto-sp13_S_contig8536:4913..53361681464123.9801776-CDS-Ecto-sp13_S_contig8536:4913..5336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8536 4914..5336 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464123.990122-UTR-Ecto-sp13_S_contig8536:5336..55561681464123.990122-UTR-Ecto-sp13_S_contig8536:5336..5556Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8536 5337..5556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8536.19938.1prot_Ecto-sp13_S_contig8536.19938.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8536 4914..5336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8536.19938.1

>prot_Ecto-sp13_S_contig8536.19938.1 ID=prot_Ecto-sp13_S_contig8536.19938.1|Name=mRNA_Ecto-sp13_S_contig8536.19938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
RRTGWPLGTQDPDPAKVSSSCGHSCSGRKSRLCHPSRHTRPRQGRRLFGT
HPEASPAGGRTRPYQPSFRSSSRSPCSRPFPPRPLVPRSDPPDTLLVIRQ
RILGDPGRWYRRIQRQAYARASCGDGRASRLHRSRCSFRW*
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mRNA from alignment at Ecto-sp13_S_contig8536:4914..5556+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8536.19938.1 ID=mRNA_Ecto-sp13_S_contig8536.19938.1|Name=mRNA_Ecto-sp13_S_contig8536.19938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=643bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8536:4914..5556+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGCACTGGCTGGCCGCTGGGCACACAGGACCCAGACCCTGCAAAAGT
CTCATCATCCTGCGGTCACAGTTGTTCGGGGAGAAAAAGTCGGCTATGTC
ACCCATCACGTCACACGCGGCCTCGCCAAGGTCGGAGGCTTTTCGGCACG
CACCCTGAAGCTTCTCCGGCAGGCGGGCGCACACGGCCTTATCAACCCTC
CTTCCGATCGTCCAGTCGCAGCCCATGCTCCCGGCCATTTCCGCCCCGTC
CGCTAGTGCCTCGCAGCGATCCTCCCGATACTCTTCTCGTAATTCGTCAA
CGCATTCTTGGAGATCCCGGCCGCTGGTATCGACGCATTCAGCGTCAAGC
CTACGCGCGAGCTTCCTGTGGCGACGGTCGAGCGTCACGACTTCATCGCT
CGCGGTGTAGTTTCCGGTGGTGAAGTTGTACTCCAGCTTGAAGCCTTGGC
CGAGCTCAACGTCAAACACTTCGTCGATGGCCCCGTCCACAACAAGAATC
TGAATCCGGCCTGGCTCTCCAGGAGAATCGATCGTTTCGAACACAGCAAC
CTCCATAAGATTCACCAGTTTAACTTCATCCGAAAGGTAGAACACGCCGC
TTACAGACCCCGAAAATTCATCCGAGTAGGCGTAACCCGTGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8536:4914..5556+

>mRNA_Ecto-sp13_S_contig8536.19938.1 ID=mRNA_Ecto-sp13_S_contig8536.19938.1|Name=mRNA_Ecto-sp13_S_contig8536.19938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8536:4914..5556+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGCACTGGCTGGCCGCTGGGCACACAGGACCCAGACCCTGCAAAAGT
CTCATCATCCTGCGGTCACAGTTGTTCGGGGAGAAAAAGTCGGCTATGTC
ACCCATCACGTCACACGCGGCCTCGCCAAGGTCGGAGGCTTTTCGGCACG
CACCCTGAAGCTTCTCCGGCAGGCGGGCGCACACGGCCTTATCAACCCTC
CTTCCGATCGTCCAGTCGCAGCCCATGCTCCCGGCCATTTCCGCCCCGTC
CGCTAGTGCCTCGCAGCGATCCTCCCGATACTCTTCTCGTAATTCGTCAA
CGCATTCTTGGAGATCCCGGCCGCTGGTATCGACGCATTCAGCGTCAAGC
CTACGCGCGAGCTTCCTGTGGCGACGGTCGAGCGTCACGACTTCATCGCT
CGCGGTGTAGTTTCCGGTGGTGA
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