mRNA_Ecto-sp13_S_contig85358.19937.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85358.19937.1
Unique NamemRNA_Ecto-sp13_S_contig85358.19937.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85358.19937.1 vs. uniprot
Match: D8LB52_ECTSI (Urease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB52_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 7.120e-50
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    7 TTQTGKLADLVLWKPSLFGAKPEMILKGGQVAWSQMGDPNASIPTPEPVEMRVMFAGKEGTGAAAGCSVAFVSGPSLAEGGPVAGYGLKKR 279
            + +TGKLADLVLWKPSLFGAKPEMILKGGQVAWSQMGDPNASIPTPEPVEMRVMFAGKEGTGAAAGCSVAFVSGPSLAEGGPVAGYGLKKR
Sbjct:  701 SVETGKLADLVLWKPSLFGAKPEMILKGGQVAWSQMGDPNASIPTPEPVEMRVMFAGKEGTGAAAGCSVAFVSGPSLAEGGPVAGYGLKKR 791
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BLAST of mRNA_Ecto-sp13_S_contig85358.19937.1 vs. uniprot
Match: A0A7W1FJ15_9BACT (Urease subunit alpha n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1FJ15_9BACT)

HSP 1 Score: 112 bits (280), Expect = 5.530e-27
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    7 TTQTGKLADLVLWKPSLFGAKPEMILKGGQVAWSQMGDPNASIPTPEPVEMRVMFAGKEGTGAAAG-CSVAFVSGPSLAEGGPVAGYGLKKR 279
            + + GKLADLVLWKP+LFGAKPE+++KGG +AW+QMGDPNASIPTP+PV MR MFA     G A G CS+AFVS  SLA  G  A YGL KR
Sbjct:  427 SVEVGKLADLVLWKPALFGAKPELVVKGGVIAWAQMGDPNASIPTPQPVIMRPMFAS---FGKATGPCSIAFVSQASLAN-GAAASYGLGKR 514
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BLAST of mRNA_Ecto-sp13_S_contig85358.19937.1 vs. uniprot
Match: A0A017SUY6_9DELT (Urease n=1 Tax=Chondromyces apiculatus DSM 436 TaxID=1192034 RepID=A0A017SUY6_9DELT)

HSP 1 Score: 104 bits (260), Expect = 9.630e-27
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    7 TTQTGKLADLVLWKPSLFGAKPEMILKGGQVAWSQMGDPNASIPTPEPVEMRVMFAGKEGTGAAAG-CSVAFVSGPSLAEGGPVAGYGLKK 276
            + + GKLADLVLWKP+ FG KPE++LKGG +AW+QMGDPNASIPTP+PV MR MFA     G A G  S AFVS  SL + G VA YGL K
Sbjct:    7 SVEVGKLADLVLWKPAFFGVKPELVLKGGVIAWAQMGDPNASIPTPQPVRMRPMFAAH---GRAPGRASFAFVSRASL-DTGAVASYGLTK 93
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BLAST of mRNA_Ecto-sp13_S_contig85358.19937.1 vs. uniprot
Match: A0A4P5Y1G7_9BACT (Urease subunit alpha n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A4P5Y1G7_9BACT)

HSP 1 Score: 111 bits (278), Expect = 1.030e-26
Identity = 60/92 (65.22%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    7 TTQTGKLADLVLWKPSLFGAKPEMILKGGQVAWSQMGDPNASIPTPEPVEMRVMFAGKEGTGAAAGC-SVAFVSGPSLAEGGPVAGYGLKKR 279
            + + GKLADLVLWKP+LFGAKPE+++KGG +AW+QMGDPNASIPTP+PV MR  F      G AAG  S+AFVS  S+A  G VAGYGL KR
Sbjct:  423 SVEVGKLADLVLWKPALFGAKPELVVKGGFIAWAQMGDPNASIPTPQPVRMRPQFGA---FGRAAGATSIAFVSAASVAA-GTVAGYGLNKR 510
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BLAST of mRNA_Ecto-sp13_S_contig85358.19937.1 vs. uniprot
Match: A0A357LVJ5_9GAMM (Urease subunit alpha n=1 Tax=Oceanospirillales bacterium TaxID=1914300 RepID=A0A357LVJ5_9GAMM)

HSP 1 Score: 110 bits (276), Expect = 1.940e-26
Identity = 60/94 (63.83%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 TKTTQTGKLADLVLWKPSLFGAKPEMILKGGQVAWSQMGDPNASIPTPEPVEMRVMFAGKEGTGAAAG-CSVAFVSGPSLAEGGPVAGYGLKKR 279
            T + +TGKLADLVLWKP++FGAKPEM++KGG +AWSQMGDPNASIPTP+PV MR MF      G A G  S+A+VS  S  E G   GYGL KR
Sbjct:  421 TGSVETGKLADLVLWKPAMFGAKPEMVIKGGVIAWSQMGDPNASIPTPQPVFMRPMFGS---FGQATGPTSIAYVS-QSCVESGAAEGYGLSKR 510
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BLAST of mRNA_Ecto-sp13_S_contig85358.19937.1 vs. uniprot
Match: UPI0005C5696C (amidohydrolase family protein n=1 Tax=Chondromyces apiculatus TaxID=51 RepID=UPI0005C5696C)

HSP 1 Score: 104 bits (260), Expect = 2.820e-26
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    7 TTQTGKLADLVLWKPSLFGAKPEMILKGGQVAWSQMGDPNASIPTPEPVEMRVMFAGKEGTGAAAG-CSVAFVSGPSLAEGGPVAGYGLKK 276
            + + GKLADLVLWKP+ FG KPE++LKGG +AW+QMGDPNASIPTP+PV MR MFA     G A G  S AFVS  SL + G VA YGL K
Sbjct:   48 SVEVGKLADLVLWKPAFFGVKPELVLKGGVIAWAQMGDPNASIPTPQPVRMRPMFAAH---GRAPGRASFAFVSRASL-DTGAVASYGLTK 134
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BLAST of mRNA_Ecto-sp13_S_contig85358.19937.1 vs. uniprot
Match: A0A7S0DWU5_9EUKA (Urease n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0DWU5_9EUKA)

HSP 1 Score: 108 bits (271), Expect = 4.790e-26
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:    7 TTQTGKLADLVLWKPSLFGAKPEMILKGGQVAWSQMGDPNASIPTPEPVEMRVMFAGKEGTGAAAGCSVAFVSGPSLAEGGPVAGYGLKKR 279
            T + GKLADLV+WKP+ FGAKPE+I+KGG +AW+QMGDPNASIPTP+PV+MR M+ G  G GA  G S+AFVS  + A+ G  A YGL KR
Sbjct:  301 TVEPGKLADLVMWKPAFFGAKPEIIIKGGVIAWAQMGDPNASIPTPQPVQMRPMY-GSFG-GAVGGTSLAFVS-QAAADAGVGAAYGLSKR 388
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BLAST of mRNA_Ecto-sp13_S_contig85358.19937.1 vs. uniprot
Match: A0A7S0APE2_9STRA (Urease n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0APE2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.230e-26
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    7 TTQTGKLADLVLWKPSLFGAKPEMILKGGQVAWSQMGDPNASIPTPEPVEMRVMFAGKEGTGAAAGCSVAFVSGPSLAEGGPVAGYGLKK 276
            + + GKLADL LWKP  FGAKPEM++KGG +AW+QMGDPNASIPTP+PV MR MF G  G  A  G SVAFVSG ++A+ G    YGL+K
Sbjct:   81 SVEPGKLADLCLWKPGFFGAKPEMVIKGGTIAWAQMGDPNASIPTPQPVYMRPMF-GAYGK-AVGGTSVAFVSGAAVAD-GIGEKYGLEK 167
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BLAST of mRNA_Ecto-sp13_S_contig85358.19937.1 vs. uniprot
Match: A0A7V7BQS3_9BACT (Urease subunit alpha n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7V7BQS3_9BACT)

HSP 1 Score: 109 bits (272), Expect = 6.980e-26
Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    7 TTQTGKLADLVLWKPSLFGAKPEMILKGGQVAWSQMGDPNASIPTPEPVEMRVMFAGKEGTGAAAG-CSVAFVSGPSLAEGGPVAGYGLKKR 279
            + + GK ADLVLWKP+ FG KPEM++KGG +AWSQMGDP+ASIPTP+PV MR MF G    G A G CS+AFVS  S ++ G VAGYGL KR
Sbjct:  426 SVEPGKFADLVLWKPAFFGVKPEMVIKGGVIAWSQMGDPSASIPTPQPVLMRPMFGG---FGLATGACSIAFVSRLSKSK-GVVAGYGLSKR 513
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BLAST of mRNA_Ecto-sp13_S_contig85358.19937.1 vs. uniprot
Match: A0A4U1JCN5_9DELT (Urease subunit alpha n=1 Tax=Polyangium fumosum TaxID=889272 RepID=A0A4U1JCN5_9DELT)

HSP 1 Score: 108 bits (271), Expect = 9.600e-26
Identity = 58/92 (63.04%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    7 TTQTGKLADLVLWKPSLFGAKPEMILKGGQVAWSQMGDPNASIPTPEPVEMRVMFAGKEGTGAAAG-CSVAFVSGPSLAEGGPVAGYGLKKR 279
            + + GKLADLVLW+P+ FGAKPE+++KGG +AW+QMGDPNASIPTP+PV MR MFA     G A G  S+AFVSG S+A  G  A YGL KR
Sbjct:  427 SVEVGKLADLVLWRPAFFGAKPEIVIKGGVIAWAQMGDPNASIPTPQPVRMRPMFAS---FGRAPGRASIAFVSGASIAS-GVAASYGLGKR 514
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85358.19937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB52_ECTSI7.120e-5096.70Urease n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A7W1FJ15_9BACT5.530e-2766.30Urease subunit alpha n=1 Tax=Planctomycetes bacter... [more]
A0A017SUY6_9DELT9.630e-2763.74Urease n=1 Tax=Chondromyces apiculatus DSM 436 Tax... [more]
A0A4P5Y1G7_9BACT1.030e-2665.22Urease subunit alpha n=1 Tax=Planctomycetes bacter... [more]
A0A357LVJ5_9GAMM1.940e-2663.83Urease subunit alpha n=1 Tax=Oceanospirillales bac... [more]
UPI0005C5696C2.820e-2663.74amidohydrolase family protein n=1 Tax=Chondromyces... [more]
A0A7S0DWU5_9EUKA4.790e-2663.74Urease n=1 Tax=Phaeocystis antarctica TaxID=33657 ... [more]
A0A7S0APE2_9STRA6.230e-2663.33Urease n=1 Tax=Minutocellus polymorphus TaxID=2655... [more]
A0A7V7BQS3_9BACT6.980e-2664.13Urease subunit alpha n=1 Tax=Verrucomicrobia bacte... [more]
A0A4U1JCN5_9DELT9.600e-2663.04Urease subunit alpha n=1 Tax=Polyangium fumosum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85358contigEcto-sp13_S_contig85358:6..284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score179.5
Seed ortholog evalue7.3e-43
Seed eggNOG ortholog2880.D8LB52
Preferred nameURE1
Model size279
KEGG rclassRC02798,RC02806
KEGG koko:K01427
KEGG ReactionR00131
KEGG Pathwayko00220,ko00230,ko00791,ko01100,ko01120,map00220,map00230,map00791,map01100,map01120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006807,GO:0008150,GO:0008152,GO:0009039,GO:0009056,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0019627,GO:0034641,GO:0043419,GO:0043603,GO:0043605,GO:0044237,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0071704,GO:0071941,GO:1901564,GO:1901565,GO:1901575
Exons1
EggNOG free text desc.urease activity
EggNOG OGs2QPKB@2759,COG0804@1
EC3.5.1.5
Cds size279
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464123.936251-CDS-Ecto-sp13_S_contig85358:5..2841681464123.936251-CDS-Ecto-sp13_S_contig85358:5..284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85358 6..284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85358.19937.1prot_Ecto-sp13_S_contig85358.19937.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85358 6..284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85358.19937.1

>prot_Ecto-sp13_S_contig85358.19937.1 ID=prot_Ecto-sp13_S_contig85358.19937.1|Name=mRNA_Ecto-sp13_S_contig85358.19937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
TKTTQTGKLADLVLWKPSLFGAKPEMILKGGQVAWSQMGDPNASIPTPEP
VEMRVMFAGKEGTGAAAGCSVAFVSGPSLAEGGPVAGYGLKKR
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mRNA from alignment at Ecto-sp13_S_contig85358:6..284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85358.19937.1 ID=mRNA_Ecto-sp13_S_contig85358.19937.1|Name=mRNA_Ecto-sp13_S_contig85358.19937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85358:6..284+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAAAACAACCCAGACCGGGAAGCTGGCCGACCTCGTTCTCTGGAAGCC
TTCCCTCTTCGGCGCGAAGCCCGAGATGATCCTCAAGGGGGGCCAGGTGG
CGTGGTCACAGATGGGGGACCCCAACGCCTCCATCCCTACCCCTGAGCCT
GTAGAGATGCGGGTCATGTTCGCCGGGAAGGAGGGGACCGGGGCGGCGGC
CGGGTGTTCGGTGGCCTTCGTGAGCGGGCCGAGCCTTGCGGAGGGGGGGC
CGGTTGCGGGCTACGGGCTCAAGAAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85358:6..284+

>mRNA_Ecto-sp13_S_contig85358.19937.1 ID=mRNA_Ecto-sp13_S_contig85358.19937.1|Name=mRNA_Ecto-sp13_S_contig85358.19937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85358:6..284+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAAAACAACCCAGACCGGGAAGCTGGCCGACCTCGTTCTCTGGAAGCC
TTCCCTCTTCGGCGCGAAGCCCGAGATGATCCTCAAGGGGGGCCAGGTGG
CGTGGTCACAGATGGGGGACCCCAACGCCTCCATCCCTACCCCTGAGCCT
GTAGAGATGCGGGTCATGTTCGCCGGGAAGGAGGGGACCGGGGCGGCGGC
CGGGTGTTCGGTGGCCTTCGTGAGCGGGCCGAGCCTTGCGGAGGGGGGGC
CGGTTGCGGGCTACGGGCTCAAGAAGAGG
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