mRNA_Ecto-sp13_S_contig8528.19928.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8528.19928.1
Unique NamemRNA_Ecto-sp13_S_contig8528.19928.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8528.19928.1 vs. uniprot
Match: A0A6H5K1I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I7_9PHAE)

HSP 1 Score: 479 bits (1232), Expect = 3.840e-168
Identity = 237/263 (90.11%), Postives = 249/263 (94.68%), Query Frame = 3 
Query:   90 MKCKKNNILSLETRVLEKREQVQKTARRLVKEKQDFLSDNFVRTWRTGFNALKASEKDNRMSDKQLPVRSYSLVDNEVWRMAEIRRWFDSHSSPQAVDGFNPVASGYTISSDKSEALPPLLRIQRVPTPKWAATEDRKVIEESRDKREQAMRLRELQDRHFSDFEGNLDVQRARTAVLASRLKPPKGWGPHHTHVAGFRTPPWKERPPQEAPRYKSPQVFRDRDIFLQAGGGLETYNADRKETRRRAAAMTAGSDIWHASAAQ 878
            M+ KKNNI SLETRVLEKREQV KTARRL KEKQDFLS NFVRTWRTGFNALKASE+DNRMSDKQLPVRSYSLVDNEVWRM EIRRWFDSHSSPQA+ GFNP+ASGYTISSDK+E LPPL+RIQRVPTPKWAA EDRK+IEESRDKREQAMRLRELQDRHFSDFEGNLDVQRAR+AVLASRLKPPKGWGPHHTHVAGFRTPPWKERPPQEAP YK P VFRDRD  +QAGGGLETYNA+RK+T+RRAAAMTAGSDIWHASAAQ
Sbjct:    1 MRGKKNNIQSLETRVLEKREQVHKTARRLGKEKQDFLSGNFVRTWRTGFNALKASEQDNRMSDKQLPVRSYSLVDNEVWRMPEIRRWFDSHSSPQAIGGFNPLASGYTISSDKNEVLPPLMRIQRVPTPKWAAAEDRKIIEESRDKREQAMRLRELQDRHFSDFEGNLDVQRARSAVLASRLKPPKGWGPHHTHVAGFRTPPWKERPPQEAPSYKPPHVFRDRDFVVQAGGGLETYNANRKKTKRRAAAMTAGSDIWHASAAQ 263
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BLAST of mRNA_Ecto-sp13_S_contig8528.19928.1 vs. uniprot
Match: D7FQG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG9_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 3.140e-145
Identity = 207/231 (89.61%), Postives = 220/231 (95.24%), Query Frame = 3 
Query:   90 MKCKKNNILSLETRVLEKREQVQKTARRLVKEKQDFLSDNFVRTWRTGFNALKASEKDNRMSDKQLPVRSYSLVDNEVWRMAEIRRWFDSHSSPQAVDGFNPVASGYTISSDKSEALPPLLRIQRVPTPKWAATEDRKVIEESRDKREQAMRLRELQDRHFSDFEGNLDVQRARTAVLASRLKPPKGWGPHHTHVAGFRTPPWKERPPQEAPRYKSPQVFRDRDIFLQAGG 782
            M+ KK+NILSLE RVLEKREQVQKTARRL +EKQDFLS NFVRTWRTGFNALKASE+DNRMSDKQLPVRS+SLVDNEVW+MAEIRRWFDSHSSPQA+DGFNP+ASGYT+SSDK+ ALPPLLRIQRVPTPKWAA EDRK+IE+SRDKREQAMR  ELQDRHF+DFEGNLDVQRARTAVLASRLKPPKGWGPHHTHVAGFRTPPWKERPPQEAPRYK PQVFRDRDIFLQ  G
Sbjct:    1 MRRKKSNILSLEARVLEKREQVQKTARRLAREKQDFLSGNFVRTWRTGFNALKASEQDNRMSDKQLPVRSHSLVDNEVWQMAEIRRWFDSHSSPQAIDGFNPLASGYTMSSDKNGALPPLLRIQRVPTPKWAAAEDRKIIEKSRDKREQAMRFSELQDRHFADFEGNLDVQRARTAVLASRLKPPKGWGPHHTHVAGFRTPPWKERPPQEAPRYKPPQVFRDRDIFLQVTG 231
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BLAST of mRNA_Ecto-sp13_S_contig8528.19928.1 vs. uniprot
Match: F0YN21_AURAN (AAA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN21_AURAN)

HSP 1 Score: 62.8 bits (151), Expect = 5.570e-7
Identity = 55/213 (25.82%), Postives = 90/213 (42.25%), Query Frame = 3 
Query:   78 FQRRMKCKKNNILSLETRVLEKREQVQKTARRLVKEKQDFLSDNFVRTWRTGFNALKASEKDNRMSDKQLPVRSYSLVDNEVWRMAEIRRWFDSHSSPQAVDGFNPVASGYTISSDKSEALPPLLRIQRVPTPKWAATEDRKVIEESRDKREQAMRLRELQDRHFSDFEGNLDVQR--ARTAVLASRLKPPKGWGPHHTHVAGFRTPPWKERP 710
            F  +M+ ++  I      VL+KR  V    +   K++    +   +R WR  +   K  E+  R  D+  PVR YS +DN+VW++ E+R WF  ++     D  +    GY +                   P  AA  +R++    +         R +    F+DFEG L  Q+  A   +   +  PP+  G     V+G+R  PW +RP
Sbjct:  566 FLAKMEKREKQIRHQALEVLDKRRAVDDARKLQEKKRNARKTTGKLRGWREQYAIQKDPERLLRCPDRSFPVRLYSKMDNDVWKLPELRSWFQMNAVDPTPDTPDAHRRGYMVP------------------PATAAPAERRLPTAHKPATAPVSMGRRMPTPGFNDFEGCLTQQKHNADLKLKERQYYPPQVEG----RVSGYRQAPWLDRP 756
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8528.19928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K1I7_9PHAE3.840e-16890.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQG9_ECTSI3.140e-14589.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0YN21_AURAN5.570e-725.82AAA domain-containing protein n=1 Tax=Aureococcus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8528contigEcto-sp13_S_contig8528:3278..6796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score64.7
Seed ortholog evalue7.9e-08
Seed eggNOG ortholog44056.XP_009041826.1
Model size1137
KEGG rclassRC00037,RC00041
KEGG koko:K00679,ko:K08900
KEGG ReactionR05333
KEGG Pathwayko00561,map00561
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.respiratory chain complex III assembly
EggNOG OGsCOG0465@1,KOG0743@2759
EC2.3.1.158
Cds size843
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8528.19928.1prot_Ecto-sp13_S_contig8528.19928.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8528 3316..6540 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464123.0140162-UTR-Ecto-sp13_S_contig8528:3277..33151681464123.0140162-UTR-Ecto-sp13_S_contig8528:3277..3315Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8528 3278..3315 +
1681464123.1261868-UTR-Ecto-sp13_S_contig8528:6540..67961681464123.1261868-UTR-Ecto-sp13_S_contig8528:6540..6796Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8528 6541..6796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464123.0278246-CDS-Ecto-sp13_S_contig8528:3315..34291681464123.0278246-CDS-Ecto-sp13_S_contig8528:3315..3429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8528 3316..3429 +
1681464123.0383508-CDS-Ecto-sp13_S_contig8528:3660..37921681464123.0383508-CDS-Ecto-sp13_S_contig8528:3660..3792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8528 3661..3792 +
1681464123.050279-CDS-Ecto-sp13_S_contig8528:4217..43611681464123.050279-CDS-Ecto-sp13_S_contig8528:4217..4361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8528 4218..4361 +
1681464123.0610306-CDS-Ecto-sp13_S_contig8528:4854..51031681464123.0610306-CDS-Ecto-sp13_S_contig8528:4854..5103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8528 4855..5103 +
1681464123.079831-CDS-Ecto-sp13_S_contig8528:5897..59931681464123.079831-CDS-Ecto-sp13_S_contig8528:5897..5993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8528 5898..5993 +
1681464123.101902-CDS-Ecto-sp13_S_contig8528:6432..65401681464123.101902-CDS-Ecto-sp13_S_contig8528:6432..6540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8528 6433..6540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8528.19928.1

>prot_Ecto-sp13_S_contig8528.19928.1 ID=prot_Ecto-sp13_S_contig8528.19928.1|Name=mRNA_Ecto-sp13_S_contig8528.19928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=281bp
MIGGNATKEDTSRFQRRMKCKKNNILSLETRVLEKREQVQKTARRLVKEK
QDFLSDNFVRTWRTGFNALKASEKDNRMSDKQLPVRSYSLVDNEVWRMAE
IRRWFDSHSSPQAVDGFNPVASGYTISSDKSEALPPLLRIQRVPTPKWAA
TEDRKVIEESRDKREQAMRLRELQDRHFSDFEGNLDVQRARTAVLASRLK
PPKGWGPHHTHVAGFRTPPWKERPPQEAPRYKSPQVFRDRDIFLQAGGGL
ETYNADRKETRRRAAAMTAGSDIWHASAAQ*
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mRNA from alignment at Ecto-sp13_S_contig8528:3278..6796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8528.19928.1 ID=mRNA_Ecto-sp13_S_contig8528.19928.1|Name=mRNA_Ecto-sp13_S_contig8528.19928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8528:3278..6796+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCATCACACCGCCGATGAGGATTGGACTGAGCCAGTAAATGATTGGAGGC
AATGCTACGAAAGAGGATACGTCGCGCTTTCAGCGACGAATGAAGTGCAA
AAAAAACAACATTCTATCCCTGGAGACTCGCGTGCTGGAGAAGAGGGAGC
AGGTAATATCTCGAGCCGACGCGTTCATGACAACGTGGGTGTACAGCAGT
ACCAATATCGTAGATCTTACAGTAGAAGCAACAGACATTCCCGCCTACGC
ATGGTGCTGAGCGCTGTGTCTGTTGTTGTCACGATTGAAGTACTAGTCTA
CTGCCGTACGTATGTTACAAACACCTGCACATCGGTAGACTTTGTGTTTT
TAAATATGATGACACCAATCAACGATCTCGCAGGTGCAAAAAACAGCAAG
ACGGCTAGTGAAGGAAAAGCAGGATTTCTTGAGCGACAACTTTGTGAGAA
CGTGGAGAACAGGTTTCAACGCCCTGAAGGCTTCCGAGAAGGACAACAGA
ATGAGTGATAAGCAGGTATGATAGTACATGCAAAGTCTATTACAACACAA
ATAAATGGTGATTAGACTATGCAACGTAGGTTTTCGTGTTTCGTGTCTTA
ATAAAATTTGTGAAGACAGCAGCTTGCTGCTGTGTGTAGACTACAGTCAG
TACAATGGGTAGTAAGCACTCTATCTTGTTGTCGATAGCAGTCCATAGCA
GCAGTATATGTAGACTGTACATGCAGCAGTAGCAGACTGCTGTCCATAGG
GTAGCAGTGTGGAAACACGATTTCGCAAGGCCGTGGGAGCATGGTGCGGG
TATTGATTACAGGAAGCAGACCACGCATGCATACACACACGCCACTAACA
TGTCGCCTTTTATACAACTGGAGGAACACAAACGCGCCAATCGGCAACTT
TTTCGTCGCAAGTAATATCCCCACCCGTCCCTGTGGCCAGCTACCCGTGC
GCAGCTACTCTCTTGTGGACAACGAAGTATGGCGAATGGCTGAGATCCGA
CGATGGTTCGACTCGCACAGTTCGCCGCAGGCAGTTGACGGCTTCAATCC
CGTGGCTTCGGGGTACACCATATCTTCGGACAAGGTACACGCACCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAGGTGCCCTTCGACCTCGACATGC
TATTCAGGCCCCCTCGGCTGAACGGTATCCTTCATAAAATCGATCGTACA
GGGACTGCTTTGCCCCCGTCCACATCAAGAACTGACTCCCTTTCTACAGG
GACTACAGTAGTATCTCTGTTCTCGAGAGTGCTGCTGACACCATGCTTAC
CGCTTGTTCCGCGTATATTCCGCCCAGAGCGAGGCTTTGCCTCCTCTTTT
GCGGATCCAGCGGGTTCCCACGCCGAAATGGGCTGCGACCGAAGACAGGA
AGGTCATCGAGGAATCGCGGGATAAGCGCGAACAGGCCATGAGATTGAGG
GAGCTCCAAGACCGGCATTTTTCTGATTTTGAGGGAAACCTTGACGTTCA
GCGGGCGCGAACTGCTGTTTTGGCCTCACGGTTGAAGCCCCCGAAGGGTT
GGGGCCCTCATCACACCCACGTAGCGGTGAGAGTCTGCGTCCTGAGAGTC
AAGCGCAGGTTGGCGAACTTGTCCCGAACGGCAATGTTTGTTTGTCCATG
TGTTCGTGCGATCTCCCCCCAGCAAGTAGTAGGTGGTATCCCTGTGGGTT
GACTTTTGTTGTGTTGACGCTAATCAATGAGCTTGGTACATGGCTTTATC
TCGTAAATTTCCGTCGTCGCACAGGGGTATTGGAAAACTAAGACAAATCT
CAAACAAAGTCGTAGCCCATCGAAGCACCCCGTAACCCGTTACACTGACT
GCTAAAAGAGTCTAGACGTGAACAAGACATGTATGTATTGATTGTTAGAT
ACTCGAGTGTCAGTCATCATGGAAAGCCCAGCCTCGAACGCTGTGTGTGT
TGCGAAACTATCTGTTCGCTAGATCTACATAGATACGTAGCAGATCTTCG
TAGTAGTGTGCGTCGCTCCGTTCATACTGGACGTCAGCTTTGACACGTTG
CGGAATGTTACCTGGACGCATCAGCCGGGTTCTCAGGGGAGGAAGACTAC
ATACAATTTTTTTGCGTCGTCGTTCTCCACCATCTGCGGTGCGTGCCTTC
GTTATTGATACAGCAGCGGCGGTGGAGTAGTAGTAGTAGCAGCGCATGCG
AAAGTAACCATACAGCCACAAAAACACTACCCATTCGAGCGAGATAACAC
CAGACCAGTCGAAGGGAATGTATTGGAGTCTTTGCAGTGAGTGACAGCGG
GTGAGCGGAAAACCGGCTCATTTATAGTTTCTCGCTTCCTCAGTCAATGC
TTGTTTGTTGCCGCCTGCAGGGGTTCCGCACGCCTCCTTGGAAAGAACGC
CCGCCACAAGAGGCTCCCCGCTACAAATCTCCACAAGTGTTTCGTGACAG
GGACATTTTCCTCCAGGTAACAGGCCCCTCTGTAGCGTTCTTATCCATCC
AATAGCACGACTGCGGCTACCCAACGGGCTCGTTCGTGCCGACGACGTCT
AATTCTCATCTTTGATGTTCGCAAAGAGTGAGCATTTGCATTGTTAGCGC
TTCTGCTTCCTCTTCTCTCTTCTCTGAACTACTGTACAGCCAGGTAGACC
ATTTTGTCTCATCGATAGTTTCATCGGCATAATCAAGCATGCGTGTGTAC
TCTAGCTCCCGAAGACACAAAAATGTCCGGTGGTCATCGATGCTGCGATT
CGTAGCCAAACAACGAACACCACCAACCGTGTGCAACCGTTATTCGTCGG
CATGATCAAGAGATTAGAGTGTAGGGCCAGAAGAAACCAAAAGTCATTGA
TCCTCCTCACCGTTGCTCAACATCGAACACCACCGTGTGCAACCGCCGTC
GGCAGGCGGGCGGGGGGTTAGAAACCTACAACGCCGACCGGAAGGAGACC
AGGCGACGGGCTGCTGCCATGACGGCGGGATCAGACATATGGCACGCAAG
CGCTGCACAATAGCAGCTAACACGTGTGCCACAGTAGTGTAGACGAGTAC
CGGGGGAATTCGCGTAAGGAACCGTATCGTAAGGAGGCTTTTCCCGGGGC
GGTGTTCCCCAACCATATCCCAGAAACACACGCCGAGTTTGTGAGACTCG
AAGTACAAGCACTTGCTAAGAAGGGATGTTTGGCGCGGTGGAAGGATGTC
AAAGGACCGGGGGGGCCGGATAGACCACGGTTGATCTTGTCCATTTCAGT
GGAACCAAACAAACCGCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8528:3278..6796+

>mRNA_Ecto-sp13_S_contig8528.19928.1 ID=mRNA_Ecto-sp13_S_contig8528.19928.1|Name=mRNA_Ecto-sp13_S_contig8528.19928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8528:3278..6796+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGGAGGCAATGCTACGAAAGAGGATACGTCGCGCTTTCAGCGACG
AATGAAGTGCAAAAAAAACAACATTCTATCCCTGGAGACTCGCGTGCTGG
AGAAGAGGGAGCAGGTGCAAAAAACAGCAAGACGGCTAGTGAAGGAAAAG
CAGGATTTCTTGAGCGACAACTTTGTGAGAACGTGGAGAACAGGTTTCAA
CGCCCTGAAGGCTTCCGAGAAGGACAACAGAATGAGTGATAAGCAGCTAC
CCGTGCGCAGCTACTCTCTTGTGGACAACGAAGTATGGCGAATGGCTGAG
ATCCGACGATGGTTCGACTCGCACAGTTCGCCGCAGGCAGTTGACGGCTT
CAATCCCGTGGCTTCGGGGTACACCATATCTTCGGACAAGAGCGAGGCTT
TGCCTCCTCTTTTGCGGATCCAGCGGGTTCCCACGCCGAAATGGGCTGCG
ACCGAAGACAGGAAGGTCATCGAGGAATCGCGGGATAAGCGCGAACAGGC
CATGAGATTGAGGGAGCTCCAAGACCGGCATTTTTCTGATTTTGAGGGAA
ACCTTGACGTTCAGCGGGCGCGAACTGCTGTTTTGGCCTCACGGTTGAAG
CCCCCGAAGGGTTGGGGCCCTCATCACACCCACGTAGCGGGGTTCCGCAC
GCCTCCTTGGAAAGAACGCCCGCCACAAGAGGCTCCCCGCTACAAATCTC
CACAAGTGTTTCGTGACAGGGACATTTTCCTCCAGGCGGGCGGGGGGTTA
GAAACCTACAACGCCGACCGGAAGGAGACCAGGCGACGGGCTGCTGCCAT
GACGGCGGGATCAGACATATGGCACGCAAGCGCTGCACAATAG
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