mRNA_Ecto-sp13_S_contig85257.19927.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85257.19927.1
Unique NamemRNA_Ecto-sp13_S_contig85257.19927.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig85257.19927.1 vs. uniprot
Match: Q8QNN8_ESV1K (EsV-1-23 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN8_ESV1K)

HSP 1 Score: 209 bits (532), Expect = 1.370e-62
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 1
Query:    1 ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHYEPCKHTHVDVFIYQSVFVTKQAKGVKVFDAQVLLDAVKKWEKVAHMIENVMKPASIKNAPSCD 318
            ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSH+EPCKH HVDV++YQSVFVTKQAKGVKVFDAQVL DAVKKW+KVAHMIENVMKPASIKNA SCD
Sbjct:  506 ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHHEPCKHKHVDVYVYQSVFVTKQAKGVKVFDAQVLFDAVKKWKKVAHMIENVMKPASIKNAASCD 611          
BLAST of mRNA_Ecto-sp13_S_contig85257.19927.1 vs. uniprot
Match: D8LP58_ECTSI (Helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP58_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.380e-61
Identity = 98/106 (92.45%), Postives = 102/106 (96.23%), Query Frame = 1
Query:    1 ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHYEPCKHTHVDVFIYQSVFVTKQAKGVKVFDAQVLLDAVKKWEKVAHMIENVMKPASIKNAPSCD 318
            ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSH+EPCKH HVDV++YQSVFVTKQ KGVKVFDAQVLLDAVKKW KV+HMIENVMKPASIKNA SCD
Sbjct:  503 ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHHEPCKHKHVDVYVYQSVFVTKQDKGVKVFDAQVLLDAVKKWTKVSHMIENVMKPASIKNAASCD 608          
BLAST of mRNA_Ecto-sp13_S_contig85257.19927.1 vs. uniprot
Match: A0A6N1NTM0_9VIRU (Putative ATP-dependent RNA helicase n=2 Tax=Tupanvirus TaxID=2094720 RepID=A0A6N1NTM0_9VIRU)

HSP 1 Score: 65.9 bits (159), Expect = 2.660e-10
Identity = 41/104 (39.42%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    1 ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHYE-PCKHTHVDVFIYQSVFVTKQAKGVKVFDAQVLLDAVKK--WEKVAHMIENVMKPASIKN 303
            IS AGS  LDL+ T ++ + +  WN  ++ QVIGRAIR+KSH   P +  HVD++ + S+F  KQ K +      + L   KK  W+K     + ++K ASI+N
Sbjct:  340 ISSAGSESLDLKNTRQIHIMEPHWNESRIQQVIGRAIRYKSHENLPLEQRHVDIYRWVSIF-PKQIKNLSADQYLIKLSQKKKQLWDKY----QEIIKSASIEN 438          
BLAST of mRNA_Ecto-sp13_S_contig85257.19927.1 vs. uniprot
Match: A0A6C0F7I3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F7I3_9ZZZZ)

HSP 1 Score: 60.5 bits (145), Expect = 2.070e-8
Identity = 33/100 (33.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHYE-PCKHTHVDVFIYQSVFVTKQAKGVKVFDAQVLLDAVKKWEKVAHMIENVMKPASI 297
            +S++GS GLDL+ T +V + + +WN  Q++QVIGRA+R+KSH   P    +VD++ + SV+ +K++    +   + L++  K  +++ +      K AS+
Sbjct:  376 LSRSGSEGLDLKRTREVHIMEPFWNNSQLDQVIGRAVRYKSHENMPNNEKNVDIYHWYSVY-SKRSSSKDISADKFLINMSKSKQELINKFIEATKEASV 474          
BLAST of mRNA_Ecto-sp13_S_contig85257.19927.1 vs. uniprot
Match: A0A3G5AJ47_9VIRU (Putative ATP-dependent RNA helicase n=1 Tax=Satyrvirus sp. TaxID=2487771 RepID=A0A3G5AJ47_9VIRU)

HSP 1 Score: 55.5 bits (132), Expect = 1.190e-6
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    1 ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHYE-PCKHTHVDVFIYQSVFVTKQAKGVKVFDA-QVLLDAVKKWEKVAHMIENVMKPASIKN 303
            +S AGS   D + T ++ + +  WN  ++ QVIGRAIR+KSH   P    HVD++ + S F     K +K   A Q L+   KK ++  +  + ++  ASI+N
Sbjct:  340 LSSAGSESFDFKNTRQIHIMEPHWNESKIKQVIGRAIRYKSHESLPKNERHVDIYRWISTF----PKPIKNASADQYLMQISKKKDENMNKYQEIIVRASIEN 438          
BLAST of mRNA_Ecto-sp13_S_contig85257.19927.1 vs. uniprot
Match: A0A2L2DMT7_MIMIV (ATP-dependent RNA helicase n=8 Tax=Mimiviridae TaxID=549779 RepID=A0A2L2DMT7_MIMIV)

HSP 1 Score: 55.1 bits (131), Expect = 1.600e-6
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHYE-PCKHTHVDVFIYQSVF 180
            IS AGS  LDL+ T ++ + +  WN  ++ QVIGRAIR+KSH + P    +VD++ + SVF
Sbjct:  340 ISSAGSESLDLKNTRQIHIMEPHWNESKITQVIGRAIRYKSHEKLPVNERNVDIYRWASVF 400          
BLAST of mRNA_Ecto-sp13_S_contig85257.19927.1 vs. uniprot
Match: A0A2E7GAT7_9PROT (Helicase ATP-binding domain-containing protein n=1 Tax=Bdellovibrionaceae bacterium TaxID=2026715 RepID=A0A2E7GAT7_9PROT)

HSP 1 Score: 55.1 bits (131), Expect = 1.740e-6
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHYE-PCKHTHVDVFIYQS 174
            ISKAGS GLD +   +V + + W+NI +M+Q+IGRA+R KSH   P    +V++++Y S
Sbjct:  679 ISKAGSEGLDFKNIRQVHILEPWFNINRMDQIIGRAVRNKSHCSLPYNKRNVEIYLYGS 737          
BLAST of mRNA_Ecto-sp13_S_contig85257.19927.1 vs. uniprot
Match: A0A6C0ESH9_9ZZZZ (Helicase ATP-binding domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ESH9_9ZZZZ)

HSP 1 Score: 55.1 bits (131), Expect = 1.740e-6
Identity = 30/96 (31.25%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHYE-PCKHTHVDVFIYQSVFVTKQAKGVKVFDAQVLLDAVKKWEKVAHMIENVMK 285
            +S+AGS GLD Q   ++ + D W+N+ +  Q+IGRA+R KSH   P    +V++++Y +  V ++ + + ++  +V        E+ A +I NV +
Sbjct:  669 VSRAGSEGLDFQNIRQMHILDPWYNMNRSEQIIGRAVRSKSHCMLPYAKRNVEIYLYGTQLVNQEEEAIDLYIYRVA-------ERKALLIANVTR 757          
BLAST of mRNA_Ecto-sp13_S_contig85257.19927.1 vs. uniprot
Match: A0A2J7ZJ70_9CHLO (Putative ATP-dependent RNA (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZJ70_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 2.330e-6
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHYE-PCKHTHVDVFIYQSVFVTKQ 192
            I+ +G+ G+ L+   +V M + +WN  +++QVIGRA+R +SH + P    HVDVF+Y S F   Q
Sbjct:  655 ITASGAEGISLKNVRQVHMIEGFWNHNRLDQVIGRAVRARSHIDLPEAERHVDVFLYLSTFTDDQ 719          
BLAST of mRNA_Ecto-sp13_S_contig85257.19927.1 vs. uniprot
Match: A0A6C0CMG5_9ZZZZ (Helicase ATP-binding domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CMG5_9ZZZZ)

HSP 1 Score: 53.9 bits (128), Expect = 4.470e-6
Identity = 23/57 (40.35%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    1 ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHYE-PCKHTHVDVFIY 168
            IS+AGS GLD +C  +V + + W+N+ ++ Q+IGRA+R KSH   P +  +V+++++
Sbjct:  856 ISEAGSEGLDFKCIRQVHILEPWYNMSRIEQIIGRAVRNKSHCSLPLEQRNVEIYMH 912          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85257.19927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
Q8QNN8_ESV1K1.370e-6293.40EsV-1-23 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP58_ECTSI1.380e-6192.45Helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6N1NTM0_9VIRU2.660e-1039.42Putative ATP-dependent RNA helicase n=2 Tax=Tupanv... [more]
A0A6C0F7I3_9ZZZZ2.070e-833.00Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A3G5AJ47_9VIRU1.190e-634.95Putative ATP-dependent RNA helicase n=1 Tax=Satyrv... [more]
A0A2L2DMT7_MIMIV1.600e-645.90ATP-dependent RNA helicase n=8 Tax=Mimiviridae Tax... [more]
A0A2E7GAT7_9PROT1.740e-645.76Helicase ATP-binding domain-containing protein n=1... [more]
A0A6C0ESH9_9ZZZZ1.740e-631.25Helicase ATP-binding domain-containing protein n=1... [more]
A0A2J7ZJ70_9CHLO2.330e-641.54Putative ATP-dependent RNA (Fragment) n=1 Tax=Tetr... [more]
A0A6C0CMG5_9ZZZZ4.470e-640.35Helicase ATP-binding domain-containing protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85257contigEcto-sp13_S_contig85257:2..325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViruses
Stop1
Start0
Seed ortholog score209.5
Seed ortholog evalue7.6e-52
Seed eggNOG ortholog654926.Q8QNN8_ESV1K
Model size324
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.N-methyltransferase activity
EggNOG OGs4QB5I@10239,4QUT2@35237
Cds size324
COG Functional cat.S
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.973929-CDS-Ecto-sp13_S_contig85257:1..3251681464122.973929-CDS-Ecto-sp13_S_contig85257:1..325Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85257 2..325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85257.19927.1prot_Ecto-sp13_S_contig85257.19927.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85257 2..325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85257.19927.1

>prot_Ecto-sp13_S_contig85257.19927.1 ID=prot_Ecto-sp13_S_contig85257.19927.1|Name=mRNA_Ecto-sp13_S_contig85257.19927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
ISKAGSVGLDLQCTSKVFMFDLWWNIPQMNQVIGRAIRFKSHYEPCKHTH
VDVFIYQSVFVTKQAKGVKVFDAQVLLDAVKKWEKVAHMIENVMKPASIK
NAPSCDN*
back to top

mRNA from alignment at Ecto-sp13_S_contig85257:2..325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85257.19927.1 ID=mRNA_Ecto-sp13_S_contig85257.19927.1|Name=mRNA_Ecto-sp13_S_contig85257.19927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85257:2..325+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTAGCAAGGCGGGGAGCGTCGGTCTAGACCTCCAGTGTACGTCAAAAGT TTTTATGTTTGACCTTTGGTGGAACATCCCCCAGATGAATCAGGTCATCG GGCGCGCAATCAGGTTCAAAAGTCACTACGAACCATGTAAACACACACAC GTGGACGTGTTTATCTACCAGTCCGTGTTTGTGACCAAACAAGCAAAGGG CGTCAAAGTGTTTGACGCCCAGGTCCTTCTTGACGCGGTGAAGAAGTGGG AAAAAGTTGCCCATATGATTGAAAACGTTATGAAGCCAGCGTCCATAAAA AACGCCCCGAGTTGCGACAATTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85257:2..325+

>mRNA_Ecto-sp13_S_contig85257.19927.1 ID=mRNA_Ecto-sp13_S_contig85257.19927.1|Name=mRNA_Ecto-sp13_S_contig85257.19927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85257:2..325+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTAGCAAGGCGGGGAGCGTCGGTCTAGACCTCCAGTGTACGTCAAAAGT
TTTTATGTTTGACCTTTGGTGGAACATCCCCCAGATGAATCAGGTCATCG
GGCGCGCAATCAGGTTCAAAAGTCACTACGAACCATGTAAACACACACAC
GTGGACGTGTTTATCTACCAGTCCGTGTTTGTGACCAAACAAGCAAAGGG
CGTCAAAGTGTTTGACGCCCAGGTCCTTCTTGACGCGGTGAAGAAGTGGG
AAAAAGTTGCCCATATGATTGAAAACGTTATGAAGCCAGCGTCCATAAAA
AACGCCCCGAGTTGCGACAATTAA
back to top