mRNA_Ecto-sp13_S_contig85225.19923.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85225.19923.1
Unique NamemRNA_Ecto-sp13_S_contig85225.19923.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85225.19923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85225contigEcto-sp13_S_contig85225:2..482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size481
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.6576614-UTR-Ecto-sp13_S_contig85225:1..561681464122.6576614-UTR-Ecto-sp13_S_contig85225:1..56Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig85225 2..56 +
1681464122.683284-UTR-Ecto-sp13_S_contig85225:434..4821681464122.683284-UTR-Ecto-sp13_S_contig85225:434..482Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig85225 435..482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.6692882-CDS-Ecto-sp13_S_contig85225:56..4341681464122.6692882-CDS-Ecto-sp13_S_contig85225:56..434Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85225 57..434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85225.19923.1prot_Ecto-sp13_S_contig85225.19923.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85225 57..434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85225.19923.1

>prot_Ecto-sp13_S_contig85225.19923.1 ID=prot_Ecto-sp13_S_contig85225.19923.1|Name=mRNA_Ecto-sp13_S_contig85225.19923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MVSSKRQSYFKDGHKQHTCVRTSIGRAGADGKCILFYSCMPGLHTIILSR
KRCSSGMITTTRQGINLAQDLRRPGHSQRTPGSRLRPTSRSFDASLIRRQ
TKCSHPTRGTHGPHRNSKRPTGPRR*
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mRNA from alignment at Ecto-sp13_S_contig85225:2..482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85225.19923.1 ID=mRNA_Ecto-sp13_S_contig85225.19923.1|Name=mRNA_Ecto-sp13_S_contig85225.19923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=481bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85225:2..482+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTCGTGTCCATGTCAACAGCTTGTATACAGTGTAGGGTTACAGACAGG
GGGTAATGGTATCAAGCAAACGGCAGTCTTACTTTAAAGACGGGCACAAG
CAACACACCTGTGTGCGCACCAGCATTGGTCGAGCCGGAGCAGATGGGAA
ATGCATTTTATTTTATTCATGTATGCCTGGACTGCATACCATCATTTTGT
CAAGGAAGCGCTGTTCCAGTGGTATGATTACCACGACTCGTCAAGGAATC
AATCTCGCACAAGACCTACGCCGACCAGGGCATTCGCAGCGCACTCCCGG
CTCGCGGCTGCGCCCGACTTCTCGCAGTTTCGACGCCAGTTTGATCCGCA
GACAGACTAAATGTAGTCATCCCACAAGGGGCACACATGGTCCGCACAGG
AATTCAAAACGGCCGACCGGGCCACGCCGGTGATCGACGAGGCTACGTAC
GCGTGCGCATGCATCCAGTCGCGTCAAAACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85225:2..482+

>mRNA_Ecto-sp13_S_contig85225.19923.1 ID=mRNA_Ecto-sp13_S_contig85225.19923.1|Name=mRNA_Ecto-sp13_S_contig85225.19923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85225:2..482+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTATCAAGCAAACGGCAGTCTTACTTTAAAGACGGGCACAAGCAACA
CACCTGTGTGCGCACCAGCATTGGTCGAGCCGGAGCAGATGGGAAATGCA
TTTTATTTTATTCATGTATGCCTGGACTGCATACCATCATTTTGTCAAGG
AAGCGCTGTTCCAGTGGTATGATTACCACGACTCGTCAAGGAATCAATCT
CGCACAAGACCTACGCCGACCAGGGCATTCGCAGCGCACTCCCGGCTCGC
GGCTGCGCCCGACTTCTCGCAGTTTCGACGCCAGTTTGATCCGCAGACAG
ACTAAATGTAGTCATCCCACAAGGGGCACACATGGTCCGCACAGGAATTC
AAAACGGCCGACCGGGCCACGCCGGTGA
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