mRNA_Ecto-sp13_S_contig85221.19922.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85221.19922.1
Unique NamemRNA_Ecto-sp13_S_contig85221.19922.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85221.19922.1 vs. uniprot
Match: D7FS56_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS56_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 5.390e-31
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:    1 AVLAQSLATLRCCSLARDVMILADIFEEEDFYPSTFGFRLAPPVEDESLTDLLALAEAAMRARVSVASALH 213
            AVLAQSLATLRCCSLARDVMILADIFEEEDFYPSTFGFRLAPPVEDESLTDLLALAEAAMRAR+     L 
Sbjct:  227 AVLAQSLATLRCCSLARDVMILADIFEEEDFYPSTFGFRLAPPVEDESLTDLLALAEAAMRARIKCTEPLR 297
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BLAST of mRNA_Ecto-sp13_S_contig85221.19922.1 vs. uniprot
Match: A0A836CGZ5_9STRA (Mak10 subunit, NatC N-terminal acetyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 9.280e-10
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 AVLAQSLATLRCCSLARDVMILADIFEEEDFYPSTFGFRLAPP--VEDESLTDLL 159
            A+ A   A LRCC +ARD+++LADI EEEDFY  +FGF+L PP  + D++L  LL
Sbjct:  164 ALFAYVAACLRCCGIARDIVLLADIHEEEDFYTKSFGFQLVPPTGISDKALVVLL 218
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85221.19922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS56_ECTSI5.390e-3190.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGZ5_9STRA9.280e-1054.55Mak10 subunit, NatC N-terminal acetyltransferase-d... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85221contigEcto-sp13_S_contig85221:186..407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score122.9
Seed ortholog evalue6.4e-26
Seed eggNOG ortholog2880.D7FS56
Preferred nameMAK10
Model size222
KEGG koko:K20823
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0006914,GO:0008080,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010467,GO:0016236,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0017196,GO:0018193,GO:0018206,GO:0019538,GO:0031248,GO:0031365,GO:0031414,GO:0031417,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0061919,GO:0071704,GO:1901564,GO:1902493,GO:1902494,GO:1990234
Exons1
EggNOG free text desc.smooth muscle cell proliferation
EggNOG OGsKOG2343@1,KOG2343@2759
Cds size222
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.6246524-CDS-Ecto-sp13_S_contig85221:185..4071681464122.6246524-CDS-Ecto-sp13_S_contig85221:185..407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85221 186..407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85221.19922.1prot_Ecto-sp13_S_contig85221.19922.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85221 186..407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85221.19922.1

>prot_Ecto-sp13_S_contig85221.19922.1 ID=prot_Ecto-sp13_S_contig85221.19922.1|Name=mRNA_Ecto-sp13_S_contig85221.19922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
AVLAQSLATLRCCSLARDVMILADIFEEEDFYPSTFGFRLAPPVEDESLT
DLLALAEAAMRARVSVASALHCS*
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mRNA from alignment at Ecto-sp13_S_contig85221:186..407-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85221.19922.1 ID=mRNA_Ecto-sp13_S_contig85221.19922.1|Name=mRNA_Ecto-sp13_S_contig85221.19922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85221:186..407- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTCTTGGCGCAGTCCCTGGCGACGCTGCGGTGCTGCTCCCTGGCCCG
CGACGTCATGATCCTCGCCGACATCTTTGAGGAGGAGGACTTCTACCCCA
GCACCTTCGGGTTTCGCCTAGCCCCCCCCGTGGAGGACGAAAGCCTGACG
GACCTCTTGGCCCTGGCGGAGGCGGCGATGAGAGCGAGGGTGAGTGTCGC
GTCCGCGCTTCATTGCAGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85221:186..407-

>mRNA_Ecto-sp13_S_contig85221.19922.1 ID=mRNA_Ecto-sp13_S_contig85221.19922.1|Name=mRNA_Ecto-sp13_S_contig85221.19922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85221:186..407- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTCTTGGCGCAGTCCCTGGCGACGCTGCGGTGCTGCTCCCTGGCCCG
CGACGTCATGATCCTCGCCGACATCTTTGAGGAGGAGGACTTCTACCCCA
GCACCTTCGGGTTTCGCCTAGCCCCCCCCGTGGAGGACGAAAGCCTGACG
GACCTCTTGGCCCTGGCGGAGGCGGCGATGAGAGCGAGGGTGAGTGTCGC
GTCCGCGCTTCATTGCAGCTAG
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