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Homology
BLAST of mRNA_Ecto-sp13_S_contig8521.19921.1 vs. uniprot
Match: A0A6H5KLG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG8_9PHAE) HSP 1 Score: 300 bits (768), Expect = 1.220e-94 Identity = 150/169 (88.76%), Postives = 158/169 (93.49%), Query Frame = 1
Query: 1 SSKIFCRFWLSTRDWMNKRRPIGVADFAKLQKKWGSTKNIMRNANMAAMFRDAAKAHFCEELYKFLAAFQQFESMNIDEAGDCGAGSSGDSPASSSSVHSHVNSRRFRPSLFSLRAEQPSQQLQPVERHCAYQVARYSEYLGMLGEFFTPGCRHEVNVSSETRCQVAKA 507
+S + FWLSTRDWM+ RRPIGVADF KLQKKWGSTKNIM NAN+AA FR+AAKAHFCEELYKFLAAFQQFESMNIDEAGD GAGSSGDSPAS SSVHSHVNSRRFRPS+FSLRAEQPSQQLQPVE+HCAYQV RYSEYLGMLGEFFTPGCRHEVNVSSETRCQVA+A
Sbjct: 335 ASLLLSTFWLSTRDWMS-RRPIGVADFTKLQKKWGSTKNIMGNANVAAKFREAAKAHFCEELYKFLAAFQQFESMNIDEAGDRGAGSSGDSPASCSSVHSHVNSRRFRPSIFSLRAEQPSQQLQPVEQHCAYQVPRYSEYLGMLGEFFTPGCRHEVNVSSETRCQVAQA 502
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 0 |
| Model size | 1083 |
| Hectar predicted targeting category | other localisation |
| Exons | 9 |
| Cds size | 1083 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464122.4800336-CDS-Ecto-sp13_S_contig8521:2..112 | 1681464122.4800336-CDS-Ecto-sp13_S_contig8521:2..112 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8521 3..112 - |
| 1681464122.4918847-CDS-Ecto-sp13_S_contig8521:1081..1222 | 1681464122.4918847-CDS-Ecto-sp13_S_contig8521:1081..1222 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8521 1082..1222 - |
| 1681464122.5056853-CDS-Ecto-sp13_S_contig8521:2239..2351 | 1681464122.5056853-CDS-Ecto-sp13_S_contig8521:2239..2351 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8521 2240..2351 - |
| 1681464122.515659-CDS-Ecto-sp13_S_contig8521:2859..2988 | 1681464122.515659-CDS-Ecto-sp13_S_contig8521:2859..2988 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8521 2860..2988 - |
| 1681464122.5257738-CDS-Ecto-sp13_S_contig8521:3710..3785 | 1681464122.5257738-CDS-Ecto-sp13_S_contig8521:3710..3785 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8521 3711..3785 - |
| 1681464122.5435212-CDS-Ecto-sp13_S_contig8521:4145..4262 | 1681464122.5435212-CDS-Ecto-sp13_S_contig8521:4145..4262 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8521 4146..4262 - |
| 1681464122.5637772-CDS-Ecto-sp13_S_contig8521:4979..5186 | 1681464122.5637772-CDS-Ecto-sp13_S_contig8521:4979..5186 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8521 4980..5186 - |
| 1681464122.5824006-CDS-Ecto-sp13_S_contig8521:5571..5676 | 1681464122.5824006-CDS-Ecto-sp13_S_contig8521:5571..5676 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8521 5572..5676 - |
| 1681464122.594202-CDS-Ecto-sp13_S_contig8521:6617..6704 | 1681464122.594202-CDS-Ecto-sp13_S_contig8521:6617..6704 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8521 6618..6704 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8521.19921.1 >prot_Ecto-sp13_S_contig8521.19921.1 ID=prot_Ecto-sp13_S_contig8521.19921.1|Name=mRNA_Ecto-sp13_S_contig8521.19921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=361bp
SSKIFCRFWLSTRDWMNKRRPIGVADFAKLQKKWGSTKNIMRNANMAAMF RDAAKAHFCEELYKFLAAFQQFESMNIDEAGDCGAGSSGDSPASSSSVHS HVNSRRFRPSLFSLRAEQPSQQLQPVERHCAYQVARYSEYLGMLGEFFTP GCRHEVNVSSETRCQVAKARTRLRCFCDWVASSEYDKRNLFTKAVHEVRM MLDQNIMGSFIHSPSFAGVARDLMKVKSAQDEISAEEEKKLLAARKRMKS GIQAITLANSVKRTWVSTLSERSDVDEGARGGGADTLDNPSTSTSDSASA PIIPLRLRTVTIGALEAGRLTTAGETAENKGSLQGSTQPLEAALVVSTAP LATLAPSPGPS back to topmRNA from alignment at Ecto-sp13_S_contig8521:3..6704- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig8521.19921.1 ID=mRNA_Ecto-sp13_S_contig8521.19921.1|Name=mRNA_Ecto-sp13_S_contig8521.19921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8521:3..6704- (Ectocarpus species13 EcNAP12_S_4_19m) TCGTCTAAAATCTTTTGCAGATTCTGGTTGAGCACTCGAGATTGGATGAA
CAAAAGAAGGCCCATCGGCGTCGCGGATTTTGCCAAGGTAATTTATTATT
GTTGTTGTTGTCGTTGTTGTTCATGTCACTGTAGTCGAGGTAGTCGTCGT
AATATATTCCGAGTGTAGGACTTTGCTAGGGCTCCCACCAGGGCCAGATC
GTTAAACTGTGGTGCAGCTTCCGAATGTTTCAGAGAAAAATGACTGTTCT
GAACTTTTGGAGCTTGGAAGCTTGGAAGCTTGTAATTGTCGAAGCAAGGC
TCGACAACGTTTCAACCGCCTTGAGTTCGTGGTTCCAAGCTTGTGCTTGA
TATGAGAACAGCTTTAGCGAAGACGTCAACAAGACCTTCGACTTTTGTTA
AAATAAAGCTGCGGCAAGAACGAAAAGGCGAAATAGAGAAACCGAGAAAG
ACAGCGTCGAAGCCTAAAGCTTAGAAAAAAAATGTGTCTTTTCATGTTTC
TTGGTTAACCGCCCCCATTGATTCTCCACGCTTTTGTCTAGCTACTGAAT
ACCACCAAGGCTGCGAAAAAGCACTCGACTGTAGTGGGGGCGGGAATTCT
TCATGACGATAGTGTACACAACTTGGGGCCGTCCACGGCAACTGTGACGA
ATATCCCAACAAGCATTGCACGGCAACCTCGGGGAGAAGGACGGTTGCCC
CGGAAGGTTGAAAGTATGGTGTAGCCTACCACGAATGTTAGAAAAAAGTT
TCTGTTCTGACGCCGTGGACAAATACAAAGTCAGACAATATTCGAAATGG
GTTTGATCAAGGACGCCTCCGCTTCAGCAACTTTGACCTAGGAGGTTCGA
GTGCGGCTTCGTGATTGACCCCAAGTACAGCGCTCGGGTCTCAAAAGGGT
CTGCTCGCGTCTCAAAAGGGTCTAAGCTGCGTCGGAAATCGCTCCCACCT
TCGTCGGTCGACCGTGAACTCTTGGCACAGCGTCACTCTAACCACACGAC
GGTAACCCCCCTCTCGATGACCAAACAGCTGCAGAAGAAGTGGGGCAGCA
CCAAGAACATCATGCGCAACGCCAACATGGCGGCGATGTTCCGCGACGCC
GCCAAGGCACACTTCTGCGAGGAGCTGTACAAGGTACTCACGGAGGCACA
CTTGAATGAGACGCTTGTGTTAGAGACGTTAATTTAAATTTGCTAGTAGT
CTAGTGCCTGTAGGTAGAGTATTTAGATATTCCAGACTCGGATCAAATCC
CGGCGTGCACCCCGGAGCACGGAGTGCAGAGTCTCGTGCGTCCCGCTCCT
CGTCTGGACAACAGTGGCTACCCTGAAGAGTCTTAGCGCTTGCCAGAATC
ATACTTCGACCCACAGTATCTACAAAACGCCTTGGGCATGGATGCTGCAG
GTAACTACCGTGACATCTGGATTACGATATGGGGTACCATTCCTGACCAT
CACCTTCGCGAATACGTGTGGTGTTCCCTTTTCGCTTCCCCTGCCGTGGC
TTGTTCATCACACCGCAGTTTTTGGCAGCTTTTCAGCAGTTCGAAAGCAT
GAACATTGATGAGGCTGGAGATTGTGGCGCTGGAAGCAGCGGTGATTCCC
CAGCCAGCTCTAGCTCGGTACACTCTCATGTAAATTCACGACGCTTTCGA
CCAAGCCTTTTTTCACTTCGAGCGGAGCAACCATCGCAGCAACTGCAACC
GGTTGAGCGGCACTGCGCCTACCAGGTACGGGGAGCTCCGTGTATTTAGA
CCGTCCCACCTCTTGGTCGAGCCTTGTTCAAATGCAAGCATCGAGAATCG
CACGCAACACCGTTCAGCGGCGAGAGACAGGACCACTCTAAGGTCGATAA
AGGTTGCACATCAGCGTTGAAACGTGCCAAATGCCAAGAATAGGAATCGC
TTTACGTGGGTGCCTGCGCCGATCAAACCCGTGGCGCGGAGAACAGGGCA
ATAATTCCTGAGCAGCAGCTTCTAGGTTTTTAGGTTCGCGTTCGGCACAG
TCCAAACGAAAATTCACATGCGTCGAGGATGTCTCCCCGATCGTCGGCTC
GAGGGGATTCATTCTGATCCCAAAGCAAACGGAGGAATTGGGGCGAGGGG
CAACATTCACATACGTGTATCGCCCGAACCCCTTCACCATAGGATTCAGG
CAGAGCGACGGCCCAACAATGGGGGTGATTGAAACGGGAGGTCTATCATT
CAATACTCTCTCCCTGTTTCTATCGCAGGCCGCACGGTGTTTGCTTTGAC
TATGCTGGTAGAAACGATGTTTGCTGGTAGAAACGACGCACCTTGGTGGA
AGACGACTGTCGCGTCGGGGACTTGTCGTGTGACCAGGAACGGCTCCTTC
CCAGCGTGCGATCGATCCCGTGAAAACACTGTGCGTTGGGTTTCTAACGT
CTGCAGTACCTGCTCGACTGCTGATACGCATGCTTTATGTAGGTTGCGCG
GTACTCCGAGTACTTGGGCATGCTCGGAGAGTTTTTCACCCCGGGCTGTC
GGCACGAGGTCAACGTCAGCAGCGAGACAAGATGTCAGGTTGCCAAGGCA
CGTACCCGTGTGCGTTTATCGTCTCTGACTCGACCCAGGCGGGAAAATCC
CCCCCATCTGATCAACAATGGGACTCGCAACAACTCGCCTTTGAAACTCT
TGGCCTGGTGCGCACGCGTACAATACACACTGCGTCTTGCTCCGCTCGGA
AATGTCCTCAAGCCTCTGGTAGCACTGTGGGCCCGCCGCAAACGGTTGAA
TGGGTCCCGCCCGCGGTGAAGCTGGTGTACGGAGCGCTGATTTGAGGGGC
AGAACCACCACTCCGAACATTTTCTCCTACTACCAGTAATCCCGATCGAC
AATACGTAACTGTTCTTACGCACTCATCTCGGTGATTGGACGCATTCTAC
GCGTGCCCGAATGCTGCAGCTCCGGTGTTTTTGTGACTGGGTGGCTAGCT
CGGAATACGATAAGCGCAACCTCTTTACGAAGGCGGTTCATGAGGTGAGC
TGAAACATTGTTTCTGGTGCTGCTTGTCGTCGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGGCACCCCCGCCATCGCGGTTGGTTGTCGTGGC
AAGAACCTTGTGGTGTTGTTCATGAAGGAGGATCTCATGTCGTTTGTCAA
TCCGCAACTTGCCACAAGCTAGAGAGCTTGTCGTCGCCCATGCTCATCAA
GTTTAGCTTGAGTGTAAGCCATGATGGGTTGGCGCGATCTGGGTTTCACA
CCATTTTCTCTACGCGACTAGAATTTCGACAAGCGCACTCGGCCATTCTT
CATCAAGCAACAATCCCGTCTGCGTTGCGGCTCGGTATTTTGAAGCAGTA
CACCATCCTCACACAGGTCCACTGAGCGGTGGTCATTGATTGCCGTTCCA
CGACGAAGAAAAATAATGTTGGAAACTCCCGCCGCCGAGAAACCCCAACA
ACACACGATCTTGTCGTCGCTCGCATGCGATGCCTACCAGAGAGACGTAT
GCGCTTGCTCAAAACAAACATAACTCTAACGTCACACAGAAATGGATCCT
TACCACAGAACCGGCCTCCAAGTTTCCTGCTGGAGAACTCGTTCGGAACG
TGCGGCAATTCACGAGTGTTGATCAGAAGGGTCCACTTGTGCCCAACACT
CCTCGGAACGCTAGAAATGACTCTCGCACTGTGCATGACAAATTCCAGAT
CCCTTCGCTCGACCAGGTGCGCATGATGCTGGACCAGAATATCATGGGGT
CGTTCATACATTCCCCGTCTTTCGCTGGCGTGGCTCGAGACCTCATGAAG
GTCAAATCCGCACAGGACGAGATATCTGCCGAAGAAGAGAAAAAGGTTTG
CATACTCGCACACCCTCATATCCTCAGCTGCAGCAACTGCTCTCAGGCTG
TAATCTACGCATCGTACTCAATTAAGAGCTCGTTCTGTGAGGGGCAGGGG
GCTATTCTCCACACAAACGAGCCCATTCCAACTATGGGATGACGACAGTC
TAATGTGCGTCATGCTCAACGTCACAAAACAGGCTACTTATATTTGGGAG
GTGTGTCGCCGACACGTGTGGATTTGTTGCTGCTGTAACCCGACGTGTAT
TCCTCGAGAATGGAGCACTCTCAGAAACATGGCATTCGTTCTGGAGATAC
AGCTCCCCCCAGTACCAGCACCTGCCTTTGTGCCGTCCATATTATACGAA
TGCTTTGAGCCGTTTCATGTTGTACACACCAGCCTCGATGGTTGTTGAAA
ACATAAAATGCCGCTCCCTGTAATAATTTTTTTGTACGCGTGCCCCCTTG
ATTACGGTAACTTCAACATTCTCACTGCGGATTGGTCCCGTGGGGCCATC
TAGCTGTTGGCTGCGAGGAAGCGAATGAAGAGCGGAATCCAGGCCATCAC
ATTAGCCAACAGCGTGAAGAGGACATGGGTGTCCACGTTATCTGAACGAA
GCGACGTGGACGAAGGTAACGCCTACTCGAACAAGGTCAACGTGCCACTG
CACCCGTCTGGACCGTTGTTGCAAGCACCATATCCTTCTCCGGGGAATCT
TTGCATGGTTCTATCTCGTCCATCGATGTACAACGACTGTAGTAGTGACG
TATAGGCGTTCACATCGTGCACCAAAAAAGGTACCAAGTTTTCCAACGAG
AAGTCCGCCTGAGAAGAGAAGAAAACCTAGGGACGAATCTCACCCGTCAT
CAAACATGCAAACGCTGGACCTTGGCATCGCCGGTAACGGCATGCGAAGG
CAGCTGAAAACTACTCTGTAACAAAACACTGTAAGTAGTTGTCTTCAATT
CTGGCGGGGTCCAGATGCAATGTAGTACTTCGATAAGCTAAAGTTTGCTT
GTCTTCCGAGTTTGCGTCGGCGGTTTTGGATTCTGTCTCGGTTTTCCTCT
GATGTCTTATAGTAGCCCTTCTATCAAGTGTATTCATGCACACGTATGGA
GATATCCACCCCTTTCCGCTCGATGAACGCCAGCCAACGGCAAAACCATA
ACACCCCCGCTCTCCCGACCAAGTACGGACGGTTGTCCAGGATCGAGGAC
TGTAGAGGCAATACTTTCTTCGCTGTGTCTTCTGAAATGCGTGTAGGTAG
GTCTAGAATAGTACCTTCAGAAATGGGTGCATGCGACATCGAACTGCGTG
GGCCAAACACGGTGATGCTACTGCATAGTGAGAGTACTGTACGTTGACTT
CGTGTTCGGAAGAACACGAGACCTGCTGAAAGTGCGGCTGCATGAATGCA
ACGATGGCATGCACAAGTCCTGACGCCGAACACAGAAGCTATCCCGCAGC
GACCGCATTCTCGTTTCCAAGACTGGGGTGAGAGGAGAAAATAGCGCAAC
ATCAACACTTCTCTCCAGATATAGCGCTGCCGAGAGTCGCATCGCATGAG
GAACTTCTCTAAGCACCGCCTTCCCCTTCTATTTATTTCCTTTGCAAAAC
ATCTTCCCGCCTCTTTTTTTGTACCCCGGTAGGAGCGAGGGGCGGAGGTG
CCGACACCCTGGACAACCCATCCACTTCAACCTCTGATTCAGCTAGTGCC
CCGATAATACCGCTTCGCCTTCGGACAGTCACGATTGGAGCTCTTGAAGC
GGGACGTCTTACCACGGCTGGAGGTAACTGTTAGGGTTTGGCCGATTGCT
AGTCCACTAAGAATGGCTCGAATGATGCTCTTCGCGTGGAAAAAATTCTA
TGAAGTGTTTCCTGCCGTGTTGTTCGCCTTCGTTCGACGTCTCCGAGAGC
TGACGGGCGATCAACAACGATGACGGCTATGCATGCAGCAACGAACTTCA
GGCAACAGGGTCTGAATACGAACATACCGGACGACCCGTTTAATAAGCTA
ATCACGGCTAGGGTGGGAGCGATTGGAAATAATAGAAATTTGGTGGGGAA
TAGGCATTGCACTTGGACGACCGCTCTTAGATATCAAGTAATGCTGATGC
ATACCCTCCTCTCACTGGAAACCGCGATGATGTCAAGCGCTGCCGTTAGT
GGGATATTTTCGCCACCTTTCAAGGCAATAAACCTGGGGCGTTTCACGGT
TTTCAGCGTTTTTACCAAAAAATGCGGAGAGCAGAGAACGTAGACGATTC
TCTCTGCCGAGAGGCAGCACCACGGGGGGGATGAGGGAAAAGGTTTTCCC
CTCAAGGTAATCTGCAACTCAGGCGCAATGTAACAACTTTCGGGCGGTTT
AGATTGAGACAAAGTACACCTTTGAAATATTGTATGCCGTACGTGTTAGG
TCTCCTTTCGCAGAGGTCTCTACTAGCTCGTCCTTGCGTGTCATCTGCGT
GGAGACCTAATATCGTTTCCCTCTGCTCAAACTATTTCTGCATCCATTCG
TCCACCTCGGCACAATAGAAGCCGAAGACAGCTTTTTCACTTGACTTCCA
ACACCGCATAAGTTTTTTGTTCAAACAACAATCACCTGGACTGTTTTTTT
GTGTTCTATGTTTGTGTTGCGATTGAACTTACACATGCGTAGGAACGCAC
AACCATTGTACGTACCACAGATGAGTGTTTCTCGTATCTCAAGGAAGCAA
CATACGACCACTTTCATCGTGTTCACGCCACTCTTCAAACAGAAACAGCA
GAAAATAAAGGGTCGCTCCAAGGCTCGACGCAACCGCTGGAGGCGGCTCT
CGTTGTTTCAACAGCACCACTGGCGACTTTAGCACCATCCCCAGGACCTT
CA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig8521:3..6704- >mRNA_Ecto-sp13_S_contig8521.19921.1 ID=mRNA_Ecto-sp13_S_contig8521.19921.1|Name=mRNA_Ecto-sp13_S_contig8521.19921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1083bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8521:3..6704- (Ectocarpus species13 EcNAP12_S_4_19m) TCGTCTAAAATCTTTTGCAGATTCTGGTTGAGCACTCGAGATTGGATGAA CAAAAGAAGGCCCATCGGCGTCGCGGATTTTGCCAAGCTGCAGAAGAAGT GGGGCAGCACCAAGAACATCATGCGCAACGCCAACATGGCGGCGATGTTC CGCGACGCCGCCAAGGCACACTTCTGCGAGGAGCTGTACAAGTTTTTGGC AGCTTTTCAGCAGTTCGAAAGCATGAACATTGATGAGGCTGGAGATTGTG GCGCTGGAAGCAGCGGTGATTCCCCAGCCAGCTCTAGCTCGGTACACTCT CATGTAAATTCACGACGCTTTCGACCAAGCCTTTTTTCACTTCGAGCGGA GCAACCATCGCAGCAACTGCAACCGGTTGAGCGGCACTGCGCCTACCAGG TTGCGCGGTACTCCGAGTACTTGGGCATGCTCGGAGAGTTTTTCACCCCG GGCTGTCGGCACGAGGTCAACGTCAGCAGCGAGACAAGATGTCAGGTTGC CAAGGCACGTACCCGTCTCCGGTGTTTTTGTGACTGGGTGGCTAGCTCGG AATACGATAAGCGCAACCTCTTTACGAAGGCGGTTCATGAGGTGCGCATG ATGCTGGACCAGAATATCATGGGGTCGTTCATACATTCCCCGTCTTTCGC TGGCGTGGCTCGAGACCTCATGAAGGTCAAATCCGCACAGGACGAGATAT CTGCCGAAGAAGAGAAAAAGCTGTTGGCTGCGAGGAAGCGAATGAAGAGC GGAATCCAGGCCATCACATTAGCCAACAGCGTGAAGAGGACATGGGTGTC CACGTTATCTGAACGAAGCGACGTGGACGAAGGAGCGAGGGGCGGAGGTG CCGACACCCTGGACAACCCATCCACTTCAACCTCTGATTCAGCTAGTGCC CCGATAATACCGCTTCGCCTTCGGACAGTCACGATTGGAGCTCTTGAAGC GGGACGTCTTACCACGGCTGGAGAAACAGCAGAAAATAAAGGGTCGCTCC AAGGCTCGACGCAACCGCTGGAGGCGGCTCTCGTTGTTTCAACAGCACCA CTGGCGACTTTAGCACCATCCCCAGGACCTTCA back to top
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