mRNA_Ecto-sp13_S_contig8514.19914.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8514.19914.1
Unique NamemRNA_Ecto-sp13_S_contig8514.19914.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8514.19914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8514contigEcto-sp13_S_contig8514:3481..3817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size337
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_000240.1
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.023959-UTR-Ecto-sp13_S_contig8514:3480..36181681464122.023959-UTR-Ecto-sp13_S_contig8514:3480..3618Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8514 3481..3618 -
1681464122.0455196-UTR-Ecto-sp13_S_contig8514:3783..38171681464122.0455196-UTR-Ecto-sp13_S_contig8514:3783..3817Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8514 3784..3817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.0354092-CDS-Ecto-sp13_S_contig8514:3618..37831681464122.0354092-CDS-Ecto-sp13_S_contig8514:3618..3783Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8514 3619..3783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8514.19914.1prot_Ecto-sp13_S_contig8514.19914.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8514 3619..3783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8514.19914.1

>prot_Ecto-sp13_S_contig8514.19914.1 ID=prot_Ecto-sp13_S_contig8514.19914.1|Name=mRNA_Ecto-sp13_S_contig8514.19914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MIDYGMEHRSRHLFVGVLLSWRARVEKKHACNVASSMWMCNPKYQFSMTQ
RART*
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mRNA from alignment at Ecto-sp13_S_contig8514:3481..3817-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8514.19914.1 ID=mRNA_Ecto-sp13_S_contig8514.19914.1|Name=mRNA_Ecto-sp13_S_contig8514.19914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=337bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8514:3481..3817- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGGGCTGTGGGCTGAGCTCACCGTGATAGATGATAGACTATGGCA
TGGAACACCGATCGCGACACCTTTTCGTCGGAGTCTTGCTGAGTTGGCGA
GCACGCGTAGAGAAAAAACACGCTTGTAACGTTGCCAGTTCCATGTGGAT
GTGCAACCCAAAGTATCAGTTCTCGATGACTCAACGCGCCAGAACCTGAG
GAGCAAAAACTGAACGGACAAACAGCCCGGCACATTATTGTTTGTGTCGT
CTACTCTACGCTTGCCTACACAGCAGTCTACAAAATGAATACTATACAGA
CCAACACGCTTGGCCAATTACGCGTGGTGCATGCTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8514:3481..3817-

>mRNA_Ecto-sp13_S_contig8514.19914.1 ID=mRNA_Ecto-sp13_S_contig8514.19914.1|Name=mRNA_Ecto-sp13_S_contig8514.19914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8514:3481..3817- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATAGACTATGGCATGGAACACCGATCGCGACACCTTTTCGTCGGAGT
CTTGCTGAGTTGGCGAGCACGCGTAGAGAAAAAACACGCTTGTAACGTTG
CCAGTTCCATGTGGATGTGCAACCCAAAGTATCAGTTCTCGATGACTCAA
CGCGCCAGAACCTGA
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