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Homology
BLAST of mRNA_Ecto-sp13_S_contig8512.19912.1 vs. uniprot
Match: D8LK79_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK79_ECTSI) HSP 1 Score: 517 bits (1332), Expect = 6.650e-178 Identity = 307/340 (90.29%), Postives = 312/340 (91.76%), Query Frame = 1
Query: 16 VGLIEQIWTNRLLKELDGIDSRLPAGISLSSHDMEPESGVCKAFFEAALKATASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSEAGDGDPADSASPPTPAEGKIDGEHQSAAAAADEDGSEGERGGSAESAAAEATPELLRFKIEMDLGLDTRYPFECPVIRVLEGDDVIPTSILSGDGLLSLPGSDAWTPSSTIVNTLQDIADMVLHAKEAGLPTGQGGDDAGALERGELRPGALVGTEALSGCLFPCTPPAAPLFSGSVLAPGSRRPLDRFVGVTDRQLLELEAHRTRMNKVRMVLAIPLSSLKKLKFRRGASVTVILKTDEAKEFLTPQ 1035
VGLIEQIWTNRLLKELDGIDSRLPAGISLSSHDMEPESGVCKAFFEAALKA XXXXXXXXXXXXXXXXXXXXXXX KSEAGD DPADSASPPTPAEGKIDGEH AA DEDGSEGE AESAAAEA PELLRFKIEMDLGLDTRYPFECPVIRVLEGDDV+PTSILSGDGLLSLPGSDAWTPSSTIVNTLQDIADMVLHAKEAGLPTGQGGDDAGALERGELRPGALVGTEALSGCLFPC+PPAAPLFSGSVLAPGSRRPLDR+VGVTDRQLLELEAHRTRMNK +VLAIPLS+LKKLKFRRGASVTVILKTDEAKEFLTPQ
Sbjct: 6 VGLIEQIWTNRLLKELDGIDSRLPAGISLSSHDMEPESGVCKAFFEAALKAXXXXXXXXXXXXXXXXXXXXXXXXXXKVDGSGK-----KSEAGDSDPADSASPPTPAEGKIDGEHPPPAA--DEDGSEGEGXXXAESAAAEAAPELLRFKIEMDLGLDTRYPFECPVIRVLEGDDVMPTSILSGDGLLSLPGSDAWTPSSTIVNTLQDIADMVLHAKEAGLPTGQGGDDAGALERGELRPGALVGTEALSGCLFPCSPPAAPLFSGSVLAPGSRRPLDRYVGVTDRQLLELEAHRTRMNKTVVVLAIPLSNLKKLKFRRGASVTVILKTDEAKEFLTPQ 338
BLAST of mRNA_Ecto-sp13_S_contig8512.19912.1 vs. uniprot
Match: A0A6H5KXF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF8_9PHAE) HSP 1 Score: 473 bits (1216), Expect = 1.200e-159 Identity = 301/362 (83.15%), Postives = 309/362 (85.36%), Query Frame = 1
Query: 31 QIWTNRLLKELDGIDSRLPAGISLSSHDMEPESGVCKAFFEAALKATASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKS-------------------------EAGDGDPADSASPPTPAEGKIDGEHQSAAAAAD--EDGSEGERGGSAESAAAEATPELLRFKIEMDLGLDTRYPFECPVIRVLEGDDVIPTSILSGDGLLSLPGSDAWTPSSTIVNTLQDIADMVLHAKEAGLPTGQGGDDAGALERGELRPGALVGTEALSGCLFPCTPPAAPLFSGSVLAPGSRRPLDRFVGVTDRQLLELEAHRTRMNKVRMVLAIPLSSLKKLKFRRGASVTVILKTDEAKEFLTPQ 1035
QIWTNRLLKELDGIDSRLPAGISLSSHDMEPESGVCKAFFEAALKATASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GD PADSASPPTP+EG +D EHQ E+GSEGER AAAEA PELLRFKIEMDLGL+TRYPFECPVIRVLEGDDV+PTSILSGDGLLSLPGSDAWTPSSTIVNTLQDIADMVLHA+EAGLPTGQGGDDAGALERGELRPGALVGTEALSGCLFPCTPP APLFSGSVLAPGSRRPLDR+VGVTDRQLLELEAHRTRMNK +VLAIPLSSLKKLKFRRGASVT ILKTDEAKEFLTPQ
Sbjct: 5 QIWTNRLLKELDGIDSRLPAGISLSSHDMEPESGVCKAFFEAALKATASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRGEEXXXXXXXXXXXXXXXXXXXXXXGDSGPADSASPPTPSEGTVDEEHQXXXXXXXXXEEGSEGERXXXXXXAAAEAAPELLRFKIEMDLGLETRYPFECPVIRVLEGDDVMPTSILSGDGLLSLPGSDAWTPSSTIVNTLQDIADMVLHAEEAGLPTGQGGDDAGALERGELRPGALVGTEALSGCLFPCTPPVAPLFSGSVLAPGSRRPLDRYVGVTDRQLLELEAHRTRMNKTVVVLAIPLSSLKKLKFRRGASVTAILKTDEAKEFLTPQ 366
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 0 |
| Start | 1 |
| Seed ortholog score | 521.5 |
| Seed ortholog evalue | 2.9e-145 |
| Seed eggNOG ortholog | 2880.D8LK79 |
| Model size | 1035 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| EggNOG OGs | 2CDVM@1,2SBA9@2759 |
| Cds size | 1035 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464121.8473043-CDS-Ecto-sp13_S_contig8512:1193..1417 | 1681464121.8473043-CDS-Ecto-sp13_S_contig8512:1193..1417 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8512 1194..1417 + |
| 1681464121.858089-CDS-Ecto-sp13_S_contig8512:2131..2404 | 1681464121.858089-CDS-Ecto-sp13_S_contig8512:2131..2404 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8512 2132..2404 + |
| 1681464121.8680801-CDS-Ecto-sp13_S_contig8512:2994..3136 | 1681464121.8680801-CDS-Ecto-sp13_S_contig8512:2994..3136 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8512 2995..3136 + |
| 1681464121.880266-CDS-Ecto-sp13_S_contig8512:3823..3895 | 1681464121.880266-CDS-Ecto-sp13_S_contig8512:3823..3895 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8512 3824..3895 + |
| 1681464121.8916926-CDS-Ecto-sp13_S_contig8512:4931..5146 | 1681464121.8916926-CDS-Ecto-sp13_S_contig8512:4931..5146 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8512 4932..5146 + |
| 1681464121.9110432-CDS-Ecto-sp13_S_contig8512:6281..6390 | 1681464121.9110432-CDS-Ecto-sp13_S_contig8512:6281..6390 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig8512 6282..6390 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8512.19912.1 >prot_Ecto-sp13_S_contig8512.19912.1 ID=prot_Ecto-sp13_S_contig8512.19912.1|Name=mRNA_Ecto-sp13_S_contig8512.19912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=345bp
MLFVDVGLIEQIWTNRLLKELDGIDSRLPAGISLSSHDMEPESGVCKAFF EAALKATASGGGGGKEEEEEEEEGSRGEKQEEEEEEEKGDGGGKKSEAGD GDPADSASPPTPAEGKIDGEHQSAAAAADEDGSEGERGGSAESAAAEATP ELLRFKIEMDLGLDTRYPFECPVIRVLEGDDVIPTSILSGDGLLSLPGSD AWTPSSTIVNTLQDIADMVLHAKEAGLPTGQGGDDAGALERGELRPGALV GTEALSGCLFPCTPPAAPLFSGSVLAPGSRRPLDRFVGVTDRQLLELEAH RTRMNKVRMVLAIPLSSLKKLKFRRGASVTVILKTDEAKEFLTPQ back to topmRNA from alignment at Ecto-sp13_S_contig8512:1194..6390+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig8512.19912.1 ID=mRNA_Ecto-sp13_S_contig8512.19912.1|Name=mRNA_Ecto-sp13_S_contig8512.19912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5197bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8512:1194..6390+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGTTGTTCGTGGACGTTGGCTTGATTGAGCAGATATGGACGAATCGCCT
GCTGAAGGAGTTGGACGGGATAGACTCCCGCCTCCCCGCCGGCATCTCGC
TCTCGAGCCACGACATGGAGCCGGAGTCCGGTGTGTGCAAGGCCTTCTTT
GAGGCTGCTCTCAAGGCGACGGCGAGCGGCGGGGGCGGGGGCAAGGAGGA
GGAGGAGGAGGAGGAGGAGGGGAGGTGAGAGAGATGGTGGTGGGGGGTGG
TACTGCTGCCGCCACTGTTTTTTGTGGTCGTTGGGTGTGGTGGTGGTGGT
AGTGGTCAAGTGGAATGGCCGGTAAGCGTTGCTGGCGCACGAGGATCAGA
GACTTTTGAGGGATCAGTCAATAGAAGAGGGGGCTGCTGAATATGGCACT
GCGGAAGCAGGAACAGTTTTTGGACACACATCGCGTGTAATGGTTCGGGT
TGGGACAAGGTCGCTAATGTTCGCAGGGCCACGGACGGAGTCATGGACAT
TTACATCACAGAACACGCGTCTTTCTTGAGCCACCCTCTTGGTAGTAGCG
CTCTCCTCGTCTCTCGAAAAACGTTTAGGAAGGAGACGTTGAGGAGACAC
TTTTATGTAGTCTCCCACCTCCCCCAATAAGTTCGATTCTCGATGTTTGC
TTTTTGTCTCATATCCCGGAGCGTGTGCGTGTGGAGACCCCCCCGATGAC
TTGAAGAACGGAGACGCGCGCCACGGACAGAGGTCATGACCCCGCTTCGG
AGGTTCTTCGGCTACAGCAGTGGTAGAGAGAGGCAAGCCGCAGGGCACGT
AGAAAGTGTGAGCCACTGGTGCTGAAACAAGCGAAGGGGACGACGTGGAA
GAAAATAATCCTGACCAGACCTGTGACCTGATCTCCTCCCTCAAACCTCT
GTGCTTGGACTCGACACCGTGCACACCACTTTGTGTAGCAGAGGAGAAAA
ACAAGAAGAGGAGGAGGAGGAGGAGAAGGGGGACGGCGGCGGGAAGAAGT
CGGAGGCGGGCGATGGCGACCCCGCTGATTCTGCATCACCCCCCACTCCT
GCGGAAGGAAAAATCGACGGGGAACACCAGTCGGCGGCGGCGGCGGCTGA
TGAGGATGGTAGTGAAGGGGAGAGAGGGGGGTCCGCAGAATCAGCGGCGG
CGGAGGCGACGCCTGAGCTGCTGCGGTTTAAGATTGAGATGGATCTGGGT
CTCGATACAAGGTGCGTACGGCCGTGGGAGATGGGGGGATGGGCGGGAAT
CGGACGTTGTGACTCCCTAAAAGCGCGGGGGTTTCCTGAGCGCGATACAT
ACGGGAGAGGGTACCGGGGGTTGTGGGGGTGGGGAGCGACATAATACGTT
ATTTGCTGTGACGCCCTTGGTAGGGTGGTGCTTGCTGGAGTTGATCTGGT
GTTCCAACTGAAGCACACCACTCGATCCGCACCTCATGGCGTTACTTGCT
TGCCTGTGTTGGTTGTTTGGCGTTTGATTCCACTGTTTCCACGGGGTGGG
ATCCGTTCAAGCCTTCGGCACGCGTTTGAATCGGTCCATTGGTCAATGTG
CGGTATTTCCTTTGTCGTGCTTTCTTTTCACCCTTGGTTTTGCCGTGGAT
GCGTTCACGTGTGCGTGACCCCTCCCCCCTTTTGTCGAGAATGTTGCTGG
CGCGACGGGGTTCCGTGATGTGCTCAGGCAAATAATGCGGCGTTATTTCC
GTTATTCCCCCACCCCCGTATCTCTATTCACGAGCACAACTGTTGAGTCT
TGGTTTTCCATTGTCTTTCTTGTGGTGTTCCATATATTTTTTTGGACAAA
GGTACCCGTTCGAGTGTCCCGTGATCCGTGTGCTGGAGGGAGACGACGTC
ATCCCTACCTCGATCCTGTCCGGCGATGGATTACTGAGTTTGCCCGGCAG
CGATGCTTGGACCCCGTCGAGCACCATTGTCAACACGCTCCAGGTTTGTT
TCGATCATCACGTATCGCCTTGTTGTTGTTGTTGTCGCTGCTGCTGCTGC
TGCTGCTGATGCTGCTACTGCCTCTGCTGCTGCTTTGTGTGTGGTGGTGT
TACGGGTATTTTCGCACGCCCTTCATCAGATGTTCACACGCTCCAGGTTG
TTTCGATCATCGCGTGTCACCATGTCTTTGTTGTTGTTTTTTTTGTTGTT
CTTTCCTTGTGTGTGGGGTGTTTGTGGTATTGTCGAACGTCCTTTGTCCG
ATGTTCACACGCTCCGTTGGTGTTCGTTCTTCGCCTGTCACTGTTTAGTT
GTTGTTTTGTTGTTGTTGCAGTTGCCGGTCTTTGTTGCCTTGTGTGTGGT
ATTTTTGGGGTGTATTGTCAGATGTGTTATTATAGATGGAAGAGTGGATC
TGCTTGTAGACAAAGACACAACCAGAGACAGACAGGCAGATAAGCCTCCC
CACCAGCAAGCAGGTGACAACGTGGTGTGTGTACAAAAGCGTGGGTAAGG
ACAGTTGAAGAGGGTCTACTTAGACCTCGCACGGTGACAACCCCCAATGA
GGCAGCAACGACGAAACAACGCCGCAAACACTACACGACCATCGCTACCA
CCAAATGCTGACGCCGACGGTGCTCGCTCTCTCCCGCACCGCGCTCGCTC
TCGCCGGTGCTGTGTTGCTGGCTTGCCCAGGACATTGCCGACATGGTGTT
GCATGCTAAGGAGGCGGGGCTGCCCACGGGACAGGGCGGGGATGATGCAG
GGGTGAGCCAATTTTATGCTATTGTGTGTATTCGTAGTTTTTGTGGTGCT
GTTTCTTCGTGTTTCCTTTCTCTCGTTTGTGTCTAATCCGCTCAAAATAG
AACAGGGCGGTTATCTCCACACACCTTGTGCTTTTGCCCGGACGCAAAAC
AACGGCGGTGTGTGGCTGTCGGTACCTGAGTTGTGCGTTTGCGGGATTGG
ACGTTTTTTTTTCCCTCCAAAGTGCAAGTATAGCGCGAGTTTCTACGATG
TCATGCTGAATTTTTTATCTCCGGATGGATCAGAGGTGATGACTTGTTTC
GTTTCTGTAAGAACAGACGCGTTTTATTGCGACTTAGGTAGAGTGATATC
TTGGGATGCCCATCCTGTGTACTCTTTTGGGCCGCCTTGGCGGGAAATGA
AGTATTGCAAGGAAATAGAACAGGGCGGGGGTACGCAGACCCTACTTCCT
TAACCCTAACCCTAACCCAACTTCCCCGATTGTATGCTTTCTCCAACATG
TTTAGTTGATCGAAAGCCCTGGGATAGCTGCTGACTCTTTTGTAACAGTA
GGCGGTCTTCACCGTGAGTCATCCTGAGGATAAAAAAGTTGGTTTCTATT
CCGGAAAGGGTAGTTCTACAAGTACTGCAGCACGGAAACGTTTTGTGCTG
AAAGCAGGAACGAGCGAGCTTTGTGCCTTTTGCGATATTGGTATGCGCGA
GAAATACACCAACTATCGACGCACGCCTTGACAGCGCTCGCTGGACCCGC
CAAAGCTACCGAGCTCCACGGTTTGTCTTAGGTCTGTTCGCAGATGAACA
TGCATTGTAGACCCATCCATTTAACGGCCGCGGCTTCCGCGCCTCTTTCA
CCCGGCCGCACACCTCCCTTGCGCTCCTTTTTCGCCTCGTAGTTTCCTGC
CTTCCACCACCCCCACCGGCACCCCCGCGGCCATGAGCACTATCCACGGC
CTACTAATTTTGCCTTTTCAACACAACACTTCCTCCCACCACCATCACCA
CTAACCGCGATAACATGACGCTTGGGGGGGGAAAGCAGGCCCTGGAGCGC
GGGGAGTTGCGGCCCGGCGCCCTCGTCGGCACGGAGGCCTTGTCCGGTTG
CCTGTTCCCCTGCACGCCGCCCGCGGCGCCGCTCTTCTCCGGCTCCGTGC
TAGCGCCCGGGAGCAGGCGGCCGCTGGACCGGTTTGTCGGGGTGACAGAC
AGGCAGCTGCTGGAGCTCGAGGCGCACCGGACTCGCATGAACAAGGTGCG
GATGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTTTATTGGCATTGACCGC
GCTAACGGGCTGCCAACCAACGAAAAGGGGTCAGTCTCAGCGCGGTTGTA
AACACGAAATGTTCTAAACGCCATGATGTGGGACCCCGTGAGGGGGCGGC
GTCATGGGGGAGCGTGTGTGTGCGTGCGTGCGTTTTTACTTTTAAGATAT
TACACGTATGTCACAGAAAGATTATCGGTTCTAGACAACACCACAGCAGT
CGAAGGGGATGCGTTGGATGAAGTTTTTGCGGTGTCTTTTTATTCCGCAT
CGAACGCACTACCTGGCTGCTGAGCAATGAAGATACGTGAGTCTTTGCAG
CGCGATAAAGAACGCGAACACGCTTTCTCATCACATGGTACGTGTGTGGT
GGTCTGTGTGTATTTGTGTGTGTGTTGTTGGCATCGACCGCGCTGGCCGG
CGTGTTGACCAATGGAAAAGACGCCAGCCTCAGCGCGGCAAGAAACAGGA
ACACGCTTCCAGAGGCCATGACCGCGGACCCCGTCAGGCGCGGCCATACT
GTGTTTTTTTTTCTATTGTCATTGGCGTCGATTGCGTTGTCCTCATACGA
CCGGCGGGGATATTAGTGAGAAGACGTCGGAGCGGGGGCGCGTGACGATA
CGGTCGAATGTCTCCGAATGGAGGGTCGAGGTTCGAAGAATGGGCGACGC
CCCAGAATGCCAACACCAAAATATGTACAAACCCTTGGCGAGAGACAATC
AGGATGGGTTGTTTCGTTTGTGCTCGGGTTCGACCGCGCTTACCTCAGTA
TGGAGGCGTCAGAGTTGCAGCTATAGACAAAGAGGTTCCGTGTGTGTCAC
CAAAAGATGCCGAGGTACCGCTGTTGTCTTCTACGCCGTCGGAGTTTTTT
TTGCTGTCTGAATTATATTATTTTCATTTTTCACTCATTTAAAGATTTTT
TTCGCTCATTTGTTCGAAGGACCGACCTGTGCTAGCAACAACAGAGTGCC
GCGCCGGTGTGTTCGTATCGATAGGTTCGGCTGATCTCCCCCCCCCCCCC
CCCCCCCCCTCTCTCCCGGCGTTGCCCCCAAACCCTGGGGGGGTTTGGGG
GCCCCCTTCTGGGTCTGAAAAAGAAAAAAGTCCTGGAGGGTGTTGGCGAT
CCCCCTGTCGAGTCTGAAAAAGCTCAAGTTCCGGCGAGGGGCCTCGGTCA
CGGTTATCCTCAAGACCGATGAGGCCAAGGAGTTCCTAACGCCGCAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig8512:1194..6390+ >mRNA_Ecto-sp13_S_contig8512.19912.1 ID=mRNA_Ecto-sp13_S_contig8512.19912.1|Name=mRNA_Ecto-sp13_S_contig8512.19912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1035bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8512:1194..6390+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGTTGTTCGTGGACGTTGGCTTGATTGAGCAGATATGGACGAATCGCCT GCTGAAGGAGTTGGACGGGATAGACTCCCGCCTCCCCGCCGGCATCTCGC TCTCGAGCCACGACATGGAGCCGGAGTCCGGTGTGTGCAAGGCCTTCTTT GAGGCTGCTCTCAAGGCGACGGCGAGCGGCGGGGGCGGGGGCAAGGAGGA GGAGGAGGAGGAGGAGGAGGGGAGCAGAGGAGAAAAACAAGAAGAGGAGG AGGAGGAGGAGAAGGGGGACGGCGGCGGGAAGAAGTCGGAGGCGGGCGAT GGCGACCCCGCTGATTCTGCATCACCCCCCACTCCTGCGGAAGGAAAAAT CGACGGGGAACACCAGTCGGCGGCGGCGGCGGCTGATGAGGATGGTAGTG AAGGGGAGAGAGGGGGGTCCGCAGAATCAGCGGCGGCGGAGGCGACGCCT GAGCTGCTGCGGTTTAAGATTGAGATGGATCTGGGTCTCGATACAAGGTA CCCGTTCGAGTGTCCCGTGATCCGTGTGCTGGAGGGAGACGACGTCATCC CTACCTCGATCCTGTCCGGCGATGGATTACTGAGTTTGCCCGGCAGCGAT GCTTGGACCCCGTCGAGCACCATTGTCAACACGCTCCAGGACATTGCCGA CATGGTGTTGCATGCTAAGGAGGCGGGGCTGCCCACGGGACAGGGCGGGG ATGATGCAGGGGCCCTGGAGCGCGGGGAGTTGCGGCCCGGCGCCCTCGTC GGCACGGAGGCCTTGTCCGGTTGCCTGTTCCCCTGCACGCCGCCCGCGGC GCCGCTCTTCTCCGGCTCCGTGCTAGCGCCCGGGAGCAGGCGGCCGCTGG ACCGGTTTGTCGGGGTGACAGACAGGCAGCTGCTGGAGCTCGAGGCGCAC CGGACTCGCATGAACAAGGTGCGGATGGTGTTGGCGATCCCCCTGTCGAG TCTGAAAAAGCTCAAGTTCCGGCGAGGGGCCTCGGTCACGGTTATCCTCA AGACCGATGAGGCCAAGGAGTTCCTAACGCCGCAG back to top
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