mRNA_Ecto-sp13_S_contig8510.19910.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8510.19910.1
Unique NamemRNA_Ecto-sp13_S_contig8510.19910.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8510.19910.1 vs. uniprot
Match: D8LSI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI3_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 1.220e-102
Identity = 147/154 (95.45%), Postives = 151/154 (98.05%), Query Frame = 1 
Query:    1 SGRDSYQLVAVGARGDLPEDVRAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHDYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 462
            +GRD+YQLVAVGARGDLP+DV AMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGH YEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLC+NLQTAYDLT EEYDEMELEARDCKLEMWRHARETVAGMASGWTLD
Sbjct:   21 TGRDNYQLVAVGARGDLPDDVSAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHGYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLCVNLQTAYDLTREEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 174
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BLAST of mRNA_Ecto-sp13_S_contig8510.19910.1 vs. uniprot
Match: A0A6H5KJA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA8_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 2.410e-102
Identity = 148/154 (96.10%), Postives = 152/154 (98.70%), Query Frame = 1 
Query:    1 SGRDSYQLVAVGARGDLPEDVRAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHDYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 462
            +GRD+YQLVAVGARGDLP+DVR MQCVEQRTTEWRHLEYPEFYANISA HFVVTAAAGHDYEYDKATSTVPTALLLERPLV+SSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD
Sbjct:  112 TGRDNYQLVAVGARGDLPDDVRRMQCVEQRTTEWRHLEYPEFYANISAAHFVVTAAAGHDYEYDKATSTVPTALLLERPLVISSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 265
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BLAST of mRNA_Ecto-sp13_S_contig8510.19910.1 vs. uniprot
Match: A0A482SI13_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI13_9ARCH)

HSP 1 Score: 71.6 bits (174), Expect = 5.070e-12
Identity = 44/118 (37.29%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:   49 LPEDVRAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAA-AGHDYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEARDCK 399
            + ED+R      Q  T  R + +P FY  I+   F+VT A   ++Y   +A+S++PTA++ E PLV+++ LL+ Y CL    +H  VA+ D C  L+ A  LT +E   M  E R CK
Sbjct:    3 ITEDMR------QWLTVLRAVAHPYFYGAIARADFLVTFANPAYEYNITRASSSIPTAVMTEVPLVLTTDLLNKYDCLYGGSIHRRVADTDDCKALKNAIQLTDQERKTMREEIRRCK 114
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BLAST of mRNA_Ecto-sp13_S_contig8510.19910.1 vs. uniprot
Match: A0A482SHX3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHX3_9ARCH)

HSP 1 Score: 63.2 bits (152), Expect = 5.810e-8
Identity = 37/148 (25.00%), Postives = 70/148 (47.30%), Query Frame = 1 
Query:    7 RDSYQLVAVGARGDLPEDVRAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHDYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASG 450
            R   +LV +G    L  ++     +   TT  +  +Y  F+ N+S+  + +  +    YE+ + TS++PT+L+   P+++ + LL  Y CLR   VH   +  D C +++    L  E   +M  E   C  ++   +R T+  +  G
Sbjct:  241 RHDIELVLIGKVATLGANLTIPLKLSNITTVVKWPDYLGFFRNVSSADYAILFSKFDFYEHGRITSSIPTSLVSNLPIILPNKLLSDYACLRNQYVHRATSMADDCSSVKAVLSLRHERQQQMRNEVAFCVKQLLIESRATLHDIVFG 388
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8510.19910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSI3_ECTSI1.220e-10295.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJA8_9PHAE2.410e-10296.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SI13_9ARCH5.070e-1237.29Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A482SHX3_9ARCH5.810e-825.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8510contigEcto-sp13_S_contig8510:1448..4100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size707
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_001750.1
Cds size396
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8510.19910.1prot_Ecto-sp13_S_contig8510.19910.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8510 1690..4031 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464121.5959287-UTR-Ecto-sp13_S_contig8510:1447..16891681464121.5959287-UTR-Ecto-sp13_S_contig8510:1447..1689Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8510 1448..1689 -
1681464121.6818142-UTR-Ecto-sp13_S_contig8510:4031..41001681464121.6818142-UTR-Ecto-sp13_S_contig8510:4031..4100Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8510 4032..4100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464121.612746-CDS-Ecto-sp13_S_contig8510:1689..17821681464121.612746-CDS-Ecto-sp13_S_contig8510:1689..1782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8510 1690..1782 -
1681464121.6241572-CDS-Ecto-sp13_S_contig8510:2490..25591681464121.6241572-CDS-Ecto-sp13_S_contig8510:2490..2559Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8510 2491..2559 -
1681464121.6383843-CDS-Ecto-sp13_S_contig8510:2886..29821681464121.6383843-CDS-Ecto-sp13_S_contig8510:2886..2982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8510 2887..2982 -
1681464121.6557524-CDS-Ecto-sp13_S_contig8510:3456..35501681464121.6557524-CDS-Ecto-sp13_S_contig8510:3456..3550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8510 3457..3550 -
1681464121.6684017-CDS-Ecto-sp13_S_contig8510:3987..40311681464121.6684017-CDS-Ecto-sp13_S_contig8510:3987..4031Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8510 3988..4031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8510.19910.1

>prot_Ecto-sp13_S_contig8510.19910.1 ID=prot_Ecto-sp13_S_contig8510.19910.1|Name=mRNA_Ecto-sp13_S_contig8510.19910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHDYEYDKATSTVPTA
LLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYD
EMELEARDCKLEMWRHARETVAGMASGWTLD*
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mRNA from alignment at Ecto-sp13_S_contig8510:1448..4100-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8510.19910.1 ID=mRNA_Ecto-sp13_S_contig8510.19910.1|Name=mRNA_Ecto-sp13_S_contig8510.19910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2653bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8510:1448..4100- (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGGCCGGGACAGCTACCAGCTGGTCGCCGTGGGCGCGCGAGGCGACTT
GCCCGAGGACGTCAGGGCCATGCAGTGCGTGGAACAGCGGACGACGGAGT
GGCGACACCTCGAGTAAGACTCCACACACTTTGGTCACGTTTCCCGCAAT
CGTATGGGAAACAGTCACCTACTCAAGTTTTGATGAAGCAAACGCGTTGT
AGAAAGTAGTAGGCAATCGGTGGGATTCTGGGGGTTAGCGTTGGGGTCTA
CGTAACTACTGCTCTAGTTCATAGATAAGCGTAGTTTTTGGGCGCGGGCA
GTCTCTTTTGACCATCGAAGCAGTGACATCGGCAATAATCGATCGGAAGA
GAGAGGTATTCGTTCCTTTACAAATGGGAATCGGTGTGCAGGTGACATGA
TCGTTACTTGGGTCTCCTTGGCACCACTTTAGAAAACAAGATGATCCCCG
TGATCTACTTTCTCAGGGTACACAGAGAGAGAAATCGAACATGGTCTTGC
CGAGGGACCCGACTTCCAAGAAATATTATATTTTTTGAAAAAACCAACAG
GTACCCGGAGTTTTACGCCAACATCAGCGCGGGACATTTCGTGGTGACGG
CGGCTGCGGGGCACGATTACGAGTACGACAAGGCCACATCCACGGTATGC
CTGACGTTCACTCTGTGGCTGCTTCTTGTTTTTTCTCATCGTGTTCTCTT
TTTTTGGTGTTGTTCCTTATGCTTGCGCCACCAAAAAAGGTCACGCTCCT
CGCCGCCACGGAGTCATTTTCACTTTTTTCATCTTGTGTGATTCTTTCTT
CTGACTAACTATGCGGTCACGCCATGGCAAACCCACGCACGTTATGTACT
CTCGATGTTCAGGCACGTCGCCGAAGGCATGTTGTCAGTGCTTTCGCGTA
TCTCGCTTACCCGACAAGCAACCAAAGGCTCCCTGTCACGCAGGGATACA
GTCGAAAATCATCCAGCGCCAACAAACCCCTTCAGAGGAAAATTTAGGCC
GCGTTTTTCCTTTCTCCTTTCAATGTACAAGGCGATGCGTGACGGTTTCG
TCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGTTTT
TATCGCCGCGATCTTTAGGTGCCCACAGCTCTGTTGCTCGAGAGACCGTT
GGTGATGTCTTCGACGCTGCTCGACGCCTACCCGTGCCTCAGGAAGTCTC
GTGTCCACAGCATGGTGAGTATTTATTCTTTTCGCGTCTAGTGTTTGTGT
TGTACCCGCGGGTCACAAAACATGAGACCATTTCCTTACAAGCAGCTCAT
GGCTGGGGAAACCCGGGGTCCCAAATAGCCGGTGCAAGATCGCAGGCGTT
CGTCATTGAGAGGTAGTCCTGTCTGAGTCGAGCGCCGTTCCTATGCCAAT
CAATATCTGACAGTTTCGTATCCTGGGCTACGAACCGACTTCTACACTGT
CACGCGGCTTTTCTGTCCCGTGGGTCCCCCCCCCTGCTGCTGCTGTGTGT
GTGTGTGTTCACGTTTTTTTCACTGTGTTTGGTTTGTGCAGGTGGCTAAT
GACGACCTCTGCCTCAACCTCCAGACCGCCTACGACTTGACGACGGAGGA
GTACGACGAGGTGAGTGATCGGGGGCGATTGGTGTATGGTGGCGGTGGTA
GTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGTAGCGGTGGT
GGTGTTGGTCGTGGTAGGAGTAGCGGTGGTGGTGATAGTGGTGATGTTGT
TGGTGGTAGTGGTGGTGGTAGTGGTGGTGGTGGTGGTGGTTGTCGTGCTG
CTACTGCTTGTGATGTGGGGCAGCCGGGTTGTAACGTTCATGCACCAGCG
TATTTTTCGGAAGCCGACATCTACTAGCGTAGTCAACGGCCGGGGGTGGT
ACTCCGCCGGGTTCTCAATGGCAGACAAGATCTTCATTCTGTAGGCACAG
CCCTGACTCGTACGTTTCCAGAGAAAGATGCAGTTGGAGCCCTTTCATTT
GCAGCGGACGTCCTGGACTCATGAGTGCTTCCAAGGAAACGTATCGAAAG
ACATGTTCAGGGGCGTCGCACGACTGCTGCGAGACGCTCGTACAAAAGTC
GCCCGTACAGCAGTGCTTGTGCTGTAACGTGGAAACGAAGCACCAAACCA
GCCTTTCAAACTGGTTCCATCCAACCTCCGCTCTTGACCCTTTGTTCCGT
GACTCTGTCGACTTGTGGTTTCACTTGTTTCCGGAATTTTTTTTATGGCG
CACGGGCTGTCCTGTTTGCGTGCTGCCGCACCACTCTGACATTTTTTCCT
TTCCGGGTTGTGCAACAGATGGAGCTAGAGGCCCGCGACTGCAAGCTGGA
GATGTGGCGGCATGCCCGGGAAACGGTTGCCGGGATGGCGTCAGGTTGGA
CCCTCGATTGATCCATCTATCGATTCGAGTGTGACTTCCCGACTCGTCTA
GTCTATCATGGTGGGTGGGACCGGGGATGTCCTCCCCCATGGCAGATTCC
GGTTTCGGTTTTGTGGTGTAACTCCTCGCGTGGCGCTAGGCGCAGTTGTC
TTCCCTTAGCCCCACGAGGCTGGAGCTATCTAGGTTGCCTGTGTCGGGAG
ATTCTGGTCTGCCTAGATTGTATGTAGCAGGTGGGAGGGGGGGTTCGGGC
CCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8510:1448..4100-

>mRNA_Ecto-sp13_S_contig8510.19910.1 ID=mRNA_Ecto-sp13_S_contig8510.19910.1|Name=mRNA_Ecto-sp13_S_contig8510.19910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8510:1448..4100- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTGCGTGGAACAGCGGACGACGGAGTGGCGACACCTCGAGTACCC
GGAGTTTTACGCCAACATCAGCGCGGGACATTTCGTGGTGACGGCGGCTG
CGGGGCACGATTACGAGTACGACAAGGCCACATCCACGGTGCCCACAGCT
CTGTTGCTCGAGAGACCGTTGGTGATGTCTTCGACGCTGCTCGACGCCTA
CCCGTGCCTCAGGAAGTCTCGTGTCCACAGCATGGTGGCTAATGACGACC
TCTGCCTCAACCTCCAGACCGCCTACGACTTGACGACGGAGGAGTACGAC
GAGATGGAGCTAGAGGCCCGCGACTGCAAGCTGGAGATGTGGCGGCATGC
CCGGGAAACGGTTGCCGGGATGGCGTCAGGTTGGACCCTCGATTGA
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