mRNA_Ecto-sp13_S_contig8509.19908.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8509.19908.1 vs. uniprot
Match: D7FRT3_ECTSI (Mitochondrial inner membrane protease ATP23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT3_ECTSI) HSP 1 Score: 340 bits (872), Expect = 8.430e-118 Identity = 171/181 (94.48%), Postives = 177/181 (97.79%), Query Frame = 1
Query: 1 ETCQKHLAEVLRAERPRRLLEAIQQGLSGKAKGGGDSEEEETEPVLEPGGLTLVCQTCPREGPSAAARAYLEAPPPGVVLCANRLGSRREVEEAVVHELVHAYDYLVAGVELLDCQSLAYSEVRAARAAECSKTTRSLVCSYFRKNCVRSTAVRSTEGLFPGKGAGCVDAVFNAAYQDQRP 543
+TCQKHLAEVLRAERPRRLLEAIQQGLSGKAKGGGD +EE TEPVLEPGGL LVCQTCPR+GP+AAARAYLEAPPPGVVLCANRLGSRREVEEAVVHELVHAYDYLVAGVELLDCQ+LAYSEVRAARAAECSKT+RSLVCSYFRKNC RSTAVRSTEGLFPGKGAGCVDAVFNAAYQDQRP
Sbjct: 4 QTCQKHLAEVLRAERPRRLLEAIQQGLSGKAKGGGDGKEEGTEPVLEPGGLRLVCQTCPRQGPAAAARAYLEAPPPGVVLCANRLGSRREVEEAVVHELVHAYDYLVAGVELLDCQALAYSEVRAARAAECSKTSRSLVCSYFRKNCARSTAVRSTEGLFPGKGAGCVDAVFNAAYQDQRP 184
BLAST of mRNA_Ecto-sp13_S_contig8509.19908.1 vs. uniprot
Match: A0A4D9CLJ2_9STRA (Mitochondrial inner membrane protease ATP23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLJ2_9STRA) HSP 1 Score: 151 bits (382), Expect = 6.110e-42 Identity = 80/135 (59.26%), Postives = 97/135 (71.85%), Query Frame = 1
Query: 145 GGLTL--VCQTCPREGPSAAARAYLEAPPPGVVLCANRLGSRREVEEAVVHELVHAYDYLVAGVELLDCQSLAYSEVRAARAAECSKTTRSLVCSYFRKNCVRSTAVRSTEGLFPGKGAGCVDAVFNAAYQDQRP 543
GGLTL C C EG + ARAY+EAPP VVLCANRL RRE+EEA+VHELVH YD+ + ++L C+ LAYSEVRAAR AEC T + +CS+F+K CV+STA RST +FP +GA CV AVF AY+D P
Sbjct: 76 GGLTLNIKCINCAEEGLAMKARAYMEAPPMSVVLCANRLQDRREMEEALVHELVHVYDHALVQMDLTTCKDLAYSEVRAAREAECHYTPQ--LCSWFKKQCVQSTATRSTATIFPTEGAACVAAVFEKAYRDVGP 208
BLAST of mRNA_Ecto-sp13_S_contig8509.19908.1 vs. uniprot
Match: A0A836CIN8_9STRA (Mitochondrial inner membrane protease ATP23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIN8_9STRA) HSP 1 Score: 143 bits (360), Expect = 7.970e-39 Identity = 80/185 (43.24%), Postives = 112/185 (60.54%), Query Frame = 1
Query: 1 ETCQKHLAEVLRAERPRRLLEAIQQGLSGKAKGGGDSEEEETEPVLEPGGLTLVCQTCPREGPSAAARAYLEAPPPGVVLCANRLGSRREVEEAVVHELVHAYDYLVAGVELLDCQSLAYSEVRAARAAEC----SKTTRSLVCSYFRKNCVRSTAVRSTEGLFPGKGAGCVDAVFNAAYQDQRP 543
++C L VL+ +RPRRL++AI+ G+ + G ++ C+ CP +GP ARA+LE PP +VLC NR+ E+EEA+VHELVHA+DY + L C+SLA+SEVRAAR AEC S++ L ++ ++C+R++A RST LFPG G CVD+VF AA D P
Sbjct: 43 DSCNSALQSVLQRDRPRRLMQAIRAGMQANKENGRSND------------CGSDCRLCPDQGPEGGARAFLETPPATLVLCVNRMRGAEEMEEALVHELVHAFDYCASNRNLFSCKSLAHSEVRAAREAECHYLYSQSPPLLEGTW--RDCIRNSAARSTAQLFPGNGGRCVDSVFTAAMADTVP 213
BLAST of mRNA_Ecto-sp13_S_contig8509.19908.1 vs. uniprot
Match: A0A7S3Y7S5_HETAK (Mitochondrial inner membrane protease ATP23 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7S5_HETAK) HSP 1 Score: 130 bits (327), Expect = 1.320e-34 Identity = 68/139 (48.92%), Postives = 89/139 (64.03%), Query Frame = 1
Query: 151 LTLVCQTCPREGPSAAARAYLEAPPPGVVLCANRLGSRREVEEAVVHELVHAYDYLVAGVELLDCQSLAYSEVRAARAAECSKTTRSLVCSY--------FRKNCVRSTAVRSTEGLFPGKGAGCVDAVFNAAYQDQRP 543
+T C+ C G ARA+LE PP +VLCANRL REVEEA+VHELVHAYD+ + G +L DC+ LAYSEVRAAR AEC R+++ SY +NC+ AV +T+ +FP + + CV AVF+ A +D P
Sbjct: 39 ITASCRICKETGVEGGARAFLETPPTALVLCANRLRGAREVEEALVHELVHAYDFCIKGRDLFDCKQLAYSEVRAAREAECYY--RNVLGSYGPTWFKEKMTENCIEKNAVNATKSIFPDQASSCVAAVFHEAIRDLEP 175
BLAST of mRNA_Ecto-sp13_S_contig8509.19908.1 vs. uniprot
Match: A0A7S2SQF6_9STRA (Mitochondrial inner membrane protease ATP23 (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQF6_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.820e-33 Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 1
Query: 151 LTLVCQTCPREGPSAAARAYLEAPPPGVVLCANRLGSRREVEEAVVHELVHAYDYLVAGVELLDCQSLAYSEVRAARAAECS--KTTRSLVCSYFRKNCVRSTAVRSTEGLFPGKGAGCVDAVFNAAYQDQRP 543
L + C+ C ++G ARA+ EA P GVVLC NRL S EV E + HEL HAYDY VAG++L C +LAYSEVRAAR AECS K S + + +NC R TAV +T LFP +G CV VF A+ DQ P
Sbjct: 88 LRISCRDCRKDGVEGCARAFTEAEPMGVVLCTNRLESCHEVREVLRHELTHAYDYCVAGLDLFKCTALAYSEVRAARDAECSSYKDFPSFL-GWIERNCARRTAVSATRNLFPQEGRDCVAQVFVDAHADQSP 219
BLAST of mRNA_Ecto-sp13_S_contig8509.19908.1 vs. uniprot
Match: F0W8X6_9STRA (Mitochondrial inner membrane protease ATP23 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W8X6_9STRA) HSP 1 Score: 123 bits (308), Expect = 3.660e-32 Identity = 72/191 (37.70%), Postives = 99/191 (51.83%), Query Frame = 1
Query: 7 CQKHLAEVLRAERPRRLLEAIQQGLSGKAKGGGDSEEEETEPVLEPGGLTLVCQTCPREGPSAAARAYLEAPPPGVVLCANRLGSRREVEEAVVHELVHAYDYLVAGVELLDCQSLAYSEVRAARAAECSKTTRSL------------VCSYFRKNCVRSTAVRSTEGLFPGKGAGCVDAVFNAAYQDQRP 543
C + E L ERP++L+ I + L AK L VC C EGP ARA+ APPP +V CANRL S REVEE ++HEL+HAYD++V +++ + LA SE+RAAR +EC + +L + + K CVR A+RST+ +FP + VD + Y DQ P
Sbjct: 6 CDNAIQEALTRERPKKLVHLINRFLQKNAKAKQS--------------LDFVCLMCQEEGPEGKARAFFSAPPPTIVFCANRLHSAREVEETMMHELIHAYDFVVRTMDITNPSILACSEIRAARESECYQKAFALQKLLPESKLLKTMSEWKNKRCVRRHAIRSTQSMFPDEAVDDVDKMLEMCYSDQAP 182
BLAST of mRNA_Ecto-sp13_S_contig8509.19908.1 vs. uniprot
Match: A0A8K1C242_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C242_PYTOL) HSP 1 Score: 123 bits (308), Expect = 6.270e-32 Identity = 75/202 (37.13%), Postives = 107/202 (52.97%), Query Frame = 1
Query: 7 CQKHLAEVLRAERPRRLL-----------EAIQQGLSGKAKGGGDSEEEETEPVLEPGGLTLVCQTCPREGPSAAARAYLEAPPPGVVLCANRLGSRREVEEAVVHELVHAYDYLVAGVELLDCQSLAYSEVRAARAAECSKTTRSLV-----CSYFRKN-------CVRSTAVRSTEGLFPGKGAGCVDAVFNAAYQDQRP 543
C++ + + L+ RPRR++ EA+ L+ + D+ T + VC C +GP ARA+ APPP VV CANRL S +EVEE +VHEL+HAYD+ V +++ LA SE+R+AR +EC + R L ++F+K+ CVR A+RST +FP K VD +FN Y DQ P
Sbjct: 6 CEEAVQDALKQPRPRRIVNIINEVGSTFVEALACHLAKEQSKQADTSSSTTS--ARKNSIDFVCLDCREDGPEGRARAFFSAPPPTVVFCANRLHSAKEVEETMVHELIHAYDFTVRSMDITKSDLLACSEIRSARESECYRMARLLANAIPDVAFFQKSATWLNRQCVRDHAIRSTRSMFPDKAKDEVDKMFNQCYADQSP 205
BLAST of mRNA_Ecto-sp13_S_contig8509.19908.1 vs. uniprot
Match: K3WBI6_GLOUD (Mitochondrial inner membrane protease ATP23 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBI6_GLOUD) HSP 1 Score: 119 bits (298), Expect = 1.330e-30 Identity = 72/193 (37.31%), Postives = 106/193 (54.92%), Query Frame = 1
Query: 7 CQKHLAEVLRAERPRRLLEAIQQGLSGKAKGGGDSEEEETEPV--LEPGGLTLVCQTCPREGPSAAARAYLEAPPPGVVLCANRLGSRREVEEAVVHELVHAYDYLVAGVELLDCQSLAYSEVRAARAAECSKTTRSLVC-----SYFRKN-------CVRSTAVRSTEGLFPGKGAGCVDAVFNAAYQDQRP 543
C+ + L+ RP+ +++ I + L +AK +T+ V + + VC C +GP ARA+ APPP +V CANRL S REVEE +VHEL+HAYD+ V +++ LA SE+R+AR +EC + L +FRK+ CVR AVRST+ +FP + VD +F+ Y D+ P
Sbjct: 6 CEDAVHAALKQRRPKLIVDIINKHLVEEAK--------QTDAVGSAKKKSIDFVCIECKDDGPEGRARAFFSAPPPTIVFCANRLHSAREVEETMVHELIHAYDFTVRKMDITKSDLLACSEIRSARESECYQKAHILASMLPDVEFFRKSSNWLHTRCVREHAVRSTKSMFPNQARADVDKMFDQCYHDKSP 190
BLAST of mRNA_Ecto-sp13_S_contig8509.19908.1 vs. uniprot
Match: A0A024FYC3_9STRA (Mitochondrial inner membrane protease ATP23 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FYC3_9STRA) HSP 1 Score: 117 bits (294), Expect = 4.630e-30 Identity = 72/191 (37.70%), Postives = 100/191 (52.36%), Query Frame = 1
Query: 7 CQKHLAEVLRAERPRRLLEAIQQGLSGKAKGGGDSEEEETEPVLEPGGLTLVCQTCPREGPSAAARAYLEAPPPGVVLCANRLGSRREVEEAVVHELVHAYDYLVAGVELLDCQSLAYSEVRAARAAECSKTTRSL------------VCSYFRKNCVRSTAVRSTEGLFPGKGAGCVDAVFNAAYQDQRP 543
C + E L ERP++L++ I + L DS ++ L VC C EGP ARA+ APPP +V CANRL S EVEE ++HEL+HAYD++V +++ LA SE+RAAR +EC + L V + K CVR+ A+RST+ +FP + VD + Y DQ P
Sbjct: 6 CDDAIQEALTRERPKKLVQLINRFLER------DSTATKS--------LDFVCLMCREEGPEGKARAFFSAPPPTIVFCANRLHSAGEVEETMMHELIHAYDFVVRKMDITKPNILACSEIRAARESECYQKAFLLAKLLPESNLMETVSEWKNKRCVRTHAIRSTQSMFPDEAVDVVDKMLENCYSDQVP 182
BLAST of mRNA_Ecto-sp13_S_contig8509.19908.1 vs. uniprot
Match: A0A5D6XLN7_9STRA (Mitochondrial inner membrane protease ATP23 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLN7_9STRA) HSP 1 Score: 117 bits (293), Expect = 6.370e-30 Identity = 70/191 (36.65%), Postives = 100/191 (52.36%), Query Frame = 1
Query: 7 CQKHLAEVLRAERPRRLLEAIQQGLSGKAKGGGDSEEEETEPVLEPGGLTLVCQTCPREGPSAAARAYLEAPPPGVVLCANRLGSRREVEEAVVHELVHAYDYLVAGVELLDCQSLAYSEVRAARAAECSKTTRSLVC-----SYFRKN-------CVRSTAVRSTEGLFPGKGAGCVDAVFNAAYQDQRP 543
C++ + L+ RP+ +++ I + L+ + G + + VC C +GP ARA+ APPP VV CANRL S REVEE +VHEL+HAYD+ V ++L LA SE+R+AR +EC + L +F K+ CVR AVRST+ +FP + VD +F Y D P
Sbjct: 6 CEEAVHVALKQRRPKLIVDIINKHLAAASTDGSAQK------------INFVCLECRDDGPEGRARAFFSAPPPTVVFCANRLHSEREVEETMVHELIHAYDFTVRKMDLTKSDLLACSEIRSARESECFQKATLLAALLPDVEFFNKSSRWLHMRCVREHAVRSTQSMFPVEAQSEVDKMFTQCYADNSP 184 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8509.19908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8509.19908.1 >prot_Ecto-sp13_S_contig8509.19908.1 ID=prot_Ecto-sp13_S_contig8509.19908.1|Name=mRNA_Ecto-sp13_S_contig8509.19908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp ETCQKHLAEVLRAERPRRLLEAIQQGLSGKAKGGGDSEEEETEPVLEPGGback to top mRNA from alignment at Ecto-sp13_S_contig8509:3617..6834+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8509.19908.1 ID=mRNA_Ecto-sp13_S_contig8509.19908.1|Name=mRNA_Ecto-sp13_S_contig8509.19908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3218bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8509:3617..6834+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8509:3617..6834+ >mRNA_Ecto-sp13_S_contig8509.19908.1 ID=mRNA_Ecto-sp13_S_contig8509.19908.1|Name=mRNA_Ecto-sp13_S_contig8509.19908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8509:3617..6834+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |