mRNA_Ecto-sp13_S_contig85041.19906.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85041.19906.1
Unique NamemRNA_Ecto-sp13_S_contig85041.19906.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig85041.19906.1 vs. uniprot
Match: A0A6H5KXS1_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS1_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.800e-31
Identity = 62/128 (48.44%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 LVNGKKGIVRGISRRILDIEVICEGSPIIKIPRICFEVQVGSRGKTFHRFQFPIRLCYAITINKAQGSTLKQVGLDLRGEVFCHRMLYVALSRTTCRDNILCLVHPDRL---IDNVPHVHNVVYSDFI 375
            LVNG+K IVRG S RI+ +E++   S ++ IPRI    +VG  G  F R Q P+R+CYA+TINK+QG TL ++GLDLR +VF H  LYVALSR   R +I+CL  P RL   ++    V N+ +  F+
Sbjct:  166 LVNGQKAIVRGYSTRIVHVELLDGLSSLVLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCLTLPARLRGSLNRTAFVANITFPAFV 293          
BLAST of mRNA_Ecto-sp13_S_contig85041.19906.1 vs. uniprot
Match: A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.250e-30
Identity = 62/128 (48.44%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 LVNGKKGIVRGISRRILDIEVICEGSPIIKIPRICFEVQVGSRGKTFHRFQFPIRLCYAITINKAQGSTLKQVGLDLRGEVFCHRMLYVALSRTTCRDNILCLVHPDRL---IDNVPHVHNVVYSDFI 375
            LVNG+K IVRG S RI+ +E++   S ++ IPRI    +VG  G  F R Q P+R+CYA+TINK+QG TL ++GLDLR +VF H  LYVALSR   R +I+CL  P RL   ++    V N+ +  F+
Sbjct:  275 LVNGQKAIVRGYSTRIVHVELLDGLSSLVLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCLTLPARLRGSLNRTAFVANITFPAFV 402          
BLAST of mRNA_Ecto-sp13_S_contig85041.19906.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 7.720e-30
Identity = 62/128 (48.44%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 LVNGKKGIVRGISRRILDIEVICEGSPIIKIPRICFEVQVGSRGKTFHRFQFPIRLCYAITINKAQGSTLKQVGLDLRGEVFCHRMLYVALSRTTCRDNILCLVHPDRL---IDNVPHVHNVVYSDFI 375
            LVNG+K IVRG S RI+ +E++   S ++ IPRI    +VG  G  F R Q P+R+CYA+TINK+QG TL ++GLDLR +VF H  LYVALSR   R +I+CL  P RL   ++    V N+ +  F+
Sbjct:  652 LVNGQKAIVRGYSTRIVHVELLDGLSSLVLIPRIRLNAKVGRNGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCLTLPARLRGSLNRTAFVANITFPAFV 779          
BLAST of mRNA_Ecto-sp13_S_contig85041.19906.1 vs. uniprot
Match: A0A6H5KLU2_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.710e-27
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    1 LVNGKKGIVRGISRRILDIEVICEGSPIIKIPRICFEVQVGSRGKTFHRFQFPIRLCYAITINKAQGSTLKQVGLDLRGEVFCHRMLYVALSRTTCRDNILCLVHPDRL 327
            LVNG+K IVRG S RI+ +E++   S ++ IPRI    +V   G  F R Q P+R+ YA+TINK+QG TL ++GLDLR +VF H  LYVALSR   R +I+CL  P RL
Sbjct:  198 LVNGQKAIVRGYSTRIVHVELLDGLSSLVLIPRIRLNAKVWRNGIAFSRLQLPLRVRYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCLTLPARL 306          
BLAST of mRNA_Ecto-sp13_S_contig85041.19906.1 vs. uniprot
Match: UPI001ED8867E (uncharacterized protein LOC124173554 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8867E)

HSP 1 Score: 112 bits (279), Expect = 3.500e-26
Identity = 62/126 (49.21%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 LVNGKKGIVRGISRRILDIEVICEGSP-IIKIPRICFEVQVGSRGKTFHRFQFPIRLCYAITINKAQGSTLKQVGLDLRGEVFCHRMLYVALSRTTCRDNILCLVHPDRLIDNVPHVHNVVYSDFI 375
            LVNG K  V  ISRR ++  V   G P  + IPRICF+ QV + G    R QFP+++ Y +TINKAQG TL +VGLDLR +VF H  LYVAL R     +I  LV  DR++D  PH  N+V  + I
Sbjct: 1415 LVNGTKLFVEKISRRFVEARV--PGRPDTVLIPRICFKFQVSNSGIEMIRRQFPLKVAYGMTINKAQGQTLDKVGLDLRSDVFSHGQLYVALGRVRRAADIRVLVPEDRILDECPHTANIVIEELI 1538          
BLAST of mRNA_Ecto-sp13_S_contig85041.19906.1 vs. uniprot
Match: A0A6J1TE18_FRAOC (ATP-dependent DNA helicase n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1TE18_FRAOC)

HSP 1 Score: 104 bits (259), Expect = 1.310e-25
Identity = 59/128 (46.09%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    1 LVNGKKGIVRGISRRILDIEVICEGSP-IIKIPRICFEVQV--GSRGKTFHRFQFPIRLCYAITINKAQGSTLKQVGLDLRGEVFCHRMLYVALSRTTCRDNILCLVHPDRLIDNVPHVHNVVYSDFI 375
            LVNG K IV GIS R++ +     G+  +I IPRI F   V  GS  +   R QFP+++CY +T++K+QG T+ +VGLDLR + F H  LYVALSRT   D++  L  PDR +DN+ +V N+VY + +
Sbjct:   64 LVNGTKVIVEGISPRLVTVRK--PGTQELIAIPRILFRFPVLEGSPLQMCRR-QFPLQVCYGMTVHKSQGQTIFKVGLDLRSDCFTHGQLYVALSRTRRSDDVTVLGAPDRCVDNITYVRNIVYQELL 188          
BLAST of mRNA_Ecto-sp13_S_contig85041.19906.1 vs. uniprot
Match: A0A2G3AQD7_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQD7_CAPCH)

HSP 1 Score: 108 bits (270), Expect = 5.070e-25
Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 LVNGKKGIVRGISRRILDIEVICEGSPIIKIPRICFEVQVGSRGKTFHRFQFPIRLCYAITINKAQGSTLKQVGLDLRGEVFCHRMLYVALSRTTCRDNILCLVHPDRLIDNVPHVHNVVYS 366
            LVNG K IV  ISR  ++     +   ++ IPR  F+  +G+ G    R QFP+RL Y +T NK+QG TL +VG+DLR +VF H  LYVAL R     ++  LV   R+I+NVPH HNVVY 
Sbjct:  494 LVNGTKLIVVNISRFFIEARAPNKNDTVL-IPRAIFDFSIGNHGMEMRRRQFPLRLAYGLTKNKSQGQTLNRVGVDLRSDVFSHGQLYVALGRVRKSCDLKVLVPQQRVINNVPHTHNVVYE 614          
BLAST of mRNA_Ecto-sp13_S_contig85041.19906.1 vs. uniprot
Match: A0A8D8Y6S8_9HEMI (ATP-dependent DNA helicase n=11 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8Y6S8_9HEMI)

HSP 1 Score: 97.8 bits (242), Expect = 3.440e-21
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 1
Query:    1 LVNGKKGIVRGISRRILDIEVICEGSPIIKIPRICFEVQ-VGSRGKTFHRFQFPIRLCYAITINKAQGSTLKQVGLDLRGEVFCHRMLYVALSRTTCRDNILCLVHPDRLIDNVPHVHNVVYSDFI 375
            LVNG K IV  IS R++ + +      +  IPRI F+   V       +R QFP+ L YA++ +K+QG T++ VGLDLR + F H  LYV LSR    +NIL L+ P+++ DNV +V N+VY D +
Sbjct: 1795 LVNGTKVIVTAISPRLITVRMPASAE-LFGIPRIQFKFPFVEGSPLQINRRQFPLMLAYAMSGHKSQGQTIEYVGLDLRTDCFTHGQLYVMLSRVRTPENILVLIDPEKVFDNVAYVKNIVYEDLL 1919          
BLAST of mRNA_Ecto-sp13_S_contig85041.19906.1 vs. uniprot
Match: UPI001568188F (uncharacterized protein LOC117996074 n=2 Tax=Aphantopus hyperantus TaxID=2795564 RepID=UPI001568188F)

HSP 1 Score: 94.0 bits (232), Expect = 7.650e-20
Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    1 LVNGKKGIVRGISRRILDIEVICEGSPIIKIPRICFE--VQVGSRGKTFHRFQFPIRLCYAITINKAQGSTLKQVGLDLRGEVFCHRMLYVALSRTTCRDNILCLVHPDRLIDNVPHVHNVVYSDFI 375
            LVNG K IV   S R++ +         + IPRI F+  ++ GS  +   R QFP+++CYA+TI+K+QG T+ +VG+DLR +VF H  LYVALSR   R NI  LV+ +R+I+  P  +NVVY   +
Sbjct: 1678 LVNGTKVIVVNTSPRLITVRKPGLSDDYL-IPRIIFKAPIETGSPIEMCRR-QFPLQVCYAMTIHKSQGQTICRVGVDLRSDVFSHGQLYVALSRVQHRQNIKILVNKERVINGNPLANNVVYPPLL 1802          
BLAST of mRNA_Ecto-sp13_S_contig85041.19906.1 vs. uniprot
Match: UPI001E688A66 (uncharacterized protein LOC123868181 n=2 Tax=Maniola jurtina TaxID=191418 RepID=UPI001E688A66)

HSP 1 Score: 93.6 bits (231), Expect = 1.030e-19
Identity = 57/127 (44.88%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    1 LVNGKKGIVRGISRRILDIEVICEGSPIIKIPRICFE--VQVGSRGKTFHRFQFPIRLCYAITINKAQGSTLKQVGLDLRGEVFCHRMLYVALSRTTCRDNILCLVHPDRLIDNVPHVHNVVYSDFI 375
            LVNG K IV   S R++ +         + IPRI F+  V+ GS  +   R QFP+++CYA+TI+K+QG T+ +VG+DLR +VF H  LYVALSR   R NI  LV+ +R+I+  P  +NVVY   +
Sbjct: 1119 LVNGTKVIVVNTSPRLITVRKPGLSDDYL-IPRIIFKAPVEPGSPIEMCRR-QFPLQVCYAMTIHKSQGQTICRVGVDLRSDVFSHGQLYVALSRAQHRQNIKILVNEERVINGNPLANNVVYPPLL 1243          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85041.19906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXS1_9PHAE1.800e-3148.44ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
A0A6H5JNR7_9PHAE2.250e-3048.44ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JZJ6_9PHAE7.720e-3048.44ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KLU2_9PHAE2.710e-2752.29ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
UPI001ED8867E3.500e-2649.21uncharacterized protein LOC124173554 n=1 Tax=Ischn... [more]
A0A6J1TE18_FRAOC1.310e-2546.09ATP-dependent DNA helicase n=1 Tax=Frankliniella o... [more]
A0A2G3AQD7_CAPCH5.070e-2546.72ATP-dependent DNA helicase n=1 Tax=Capsicum chinen... [more]
A0A8D8Y6S8_9HEMI3.440e-2142.86ATP-dependent DNA helicase n=11 Tax=Cacopsylla mel... [more]
UPI001568188F7.650e-2044.09uncharacterized protein LOC117996074 n=2 Tax=Aphan... [more]
UPI001E688A661.030e-1944.88uncharacterized protein LOC123868181 n=2 Tax=Manio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85041contigEcto-sp13_S_contig85041:3..377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score95.9
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog3694.POPTR_0681s00200.1
Model size375
KEGG koko:K07466,ko:K15255
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs37Q72@33090,3GCCF@35493,4JS2N@91835,COG0507@1,KOG0987@2759
EC3.6.4.12
Cds size375
COG Functional cat.D
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464121.1070971-CDS-Ecto-sp13_S_contig85041:2..3771681464121.1070971-CDS-Ecto-sp13_S_contig85041:2..377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85041 3..377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85041.19906.1prot_Ecto-sp13_S_contig85041.19906.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85041 3..377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85041.19906.1

>prot_Ecto-sp13_S_contig85041.19906.1 ID=prot_Ecto-sp13_S_contig85041.19906.1|Name=mRNA_Ecto-sp13_S_contig85041.19906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
LVNGKKGIVRGISRRILDIEVICEGSPIIKIPRICFEVQVGSRGKTFHRF
QFPIRLCYAITINKAQGSTLKQVGLDLRGEVFCHRMLYVALSRTTCRDNI
LCLVHPDRLIDNVPHVHNVVYSDFI
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mRNA from alignment at Ecto-sp13_S_contig85041:3..377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85041.19906.1 ID=mRNA_Ecto-sp13_S_contig85041.19906.1|Name=mRNA_Ecto-sp13_S_contig85041.19906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85041:3..377+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGTCAACGGCAAGAAGGGTATCGTTCGTGGAATTTCACGGCGGATCCT CGACATCGAGGTTATTTGCGAAGGATCACCTATTATAAAAATACCGCGCA TTTGTTTCGAAGTGCAAGTAGGATCACGTGGTAAAACATTCCACCGTTTT CAGTTCCCTATCCGGCTCTGTTACGCAATCACAATTAACAAGGCACAGGG ATCAACCTTGAAACAGGTGGGCCTTGATCTCAGAGGTGAAGTATTCTGCC ATCGAATGCTCTACGTTGCCCTAAGTAGAACAACGTGCCGCGACAACATA CTGTGCTTAGTTCACCCAGACCGCCTCATAGACAACGTCCCCCATGTGCA CAATGTCGTATACTCCGACTTCATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85041:3..377+

>mRNA_Ecto-sp13_S_contig85041.19906.1 ID=mRNA_Ecto-sp13_S_contig85041.19906.1|Name=mRNA_Ecto-sp13_S_contig85041.19906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85041:3..377+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGTCAACGGCAAGAAGGGTATCGTTCGTGGAATTTCACGGCGGATCCT
CGACATCGAGGTTATTTGCGAAGGATCACCTATTATAAAAATACCGCGCA
TTTGTTTCGAAGTGCAAGTAGGATCACGTGGTAAAACATTCCACCGTTTT
CAGTTCCCTATCCGGCTCTGTTACGCAATCACAATTAACAAGGCACAGGG
ATCAACCTTGAAACAGGTGGGCCTTGATCTCAGAGGTGAAGTATTCTGCC
ATCGAATGCTCTACGTTGCCCTAAGTAGAACAACGTGCCGCGACAACATA
CTGTGCTTAGTTCACCCAGACCGCCTCATAGACAACGTCCCCCATGTGCA
CAATGTCGTATACTCCGACTTCATC
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