mRNA_Ecto-sp13_S_contig8504.19905.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8504.19905.1
Unique NamemRNA_Ecto-sp13_S_contig8504.19905.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8504.19905.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 7.610e-73
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 1
Query:    1 SAVFPLFGRLRRDASVEHLAGEHKPPPILRPVELTVVPDSVSTFEDVANTLTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRVIPIPLPNASPKASKECFWQASGRTMRYETQSHILRLL 369
            SAVFPLFGRLRRDASVEHLAGEHKPPPILRPVELTVVPDSVSTFEDVANTLTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRVIPIPLPNASPKASKECFWQA+GRTMRYETQSHILRLL
Sbjct:  760 SAVFPLFGRLRRDASVEHLAGEHKPPPILRPVELTVVPDSVSTFEDVANTLTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRVIPIPLPNASPKASKECFWQAAGRTMRYETQSHILRLL 882          
BLAST of mRNA_Ecto-sp13_S_contig8504.19905.1 vs. uniprot
Match: A0A835Z7Z7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z7_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.600e-40
Identity = 75/122 (61.48%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    1 SAVFPLFGRLRRDASVEHLAGEHKPPPILRPVELTVVPDS--VSTFEDVANTLTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRVIPIPLPNASPKASKECFWQASGRTMRYETQSHIL 360
            S V PLFGRLRRD  V+HLAG    PPI+RPVELT VPD   + TFEDV   L R   VCTLL+NQR+V+K+T+ LRA+L+ HL TRV+P+PLP   P+A+  CFWQ + R MRYETQ+HIL
Sbjct: 1346 SGVLPLFGRLRRDTGVDHLAGGSAVPPIVRPVELTSVPDKGELETFEDVGRALQRAVHVCTLLANQRDVLKSTYLLRATLLAHLFTRVLPLPLPVGHPEAAARCFWQGTHRRMRYETQAHIL 1467          
BLAST of mRNA_Ecto-sp13_S_contig8504.19905.1 vs. uniprot
Match: W7TMJ4_9STRA (EF-Hand 1, calcium-binding site n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMJ4_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.680e-38
Identity = 72/123 (58.54%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    1 SAVFPLFGRLRRDASVEHLAGEHKPPPILRPVELTVVPDSVSTFEDVANTLTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRVIPIPLPNASPKASKECFWQASGRTMRYETQSHILRLL 369
            +A FPL+GRLRRDASVEHL G+ + PPIL PV+LT+VP+ VSTF DV N L  C ++CT++ NQ  +MKNT+  R SLI HL+TRVIP+PLP   P  + +CFW  + + MRYETQ+ +LRLL
Sbjct:  378 AACFPLWGRLRRDASVEHLIGQARVPPILLPVQLTLVPEKVSTFNDVTNALRHCVQLCTIMENQMYLMKNTYCHRISLIQHLITRVIPLPLPLNHPARAVKCFW--ASQPMRYETQADLLRLL 498          
BLAST of mRNA_Ecto-sp13_S_contig8504.19905.1 vs. uniprot
Match: A0A2R5FYY4_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY4_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.740e-37
Identity = 70/123 (56.91%), Postives = 89/123 (72.36%), Query Frame = 1
Query:    1 SAVFPLFGRLRRDASVEHLAGEHKPPPILRPVELTVVPDSVSTFEDVANTLTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRVIPIPLPNASPKASKECFWQASGRTMRYETQSHILRLL 369
            +A  P+FG  RRD SVEHLAG   PPPILRPV+LT+VPD++  F DVA TL  C  +CTLL NQ+++++NT+ +R +LI HL T+VIP+PL    PK    CFW A  + MRYETQ+ ILRLL
Sbjct:  723 AACMPMFGPFRRDCSVEHLAGGAAPPPILRPVQLTLVPDAIEDFADVAITLRHCVNICTLLDNQKDLIRNTYCIRIALIQHLFTQVIPLPLARNDPKRPDHCFWYA--KPMRYETQADILRLL 843          
BLAST of mRNA_Ecto-sp13_S_contig8504.19905.1 vs. uniprot
Match: A0A7S3T2B5_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T2B5_EMIHU)

HSP 1 Score: 130 bits (326), Expect = 3.850e-35
Identity = 65/120 (54.17%), Postives = 85/120 (70.83%), Query Frame = 1
Query:   10 FPLFGRLRRDASVEHLAGEHKPPPILRPVELTVVPDSVSTFEDVANTLTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRVIPIPLPNASPKASKECFWQASGRTMRYETQSHILRLL 369
            F LFGR  R  SV+HLAGE   PP++ PVEL++VPD VS++EDV N L     +C LL+NQ+  + NT+ LR SL+ HL+T VIP+PLP + P+ +  CFW AS   MRYETQ+ +LRLL
Sbjct:   91 FDLFGRALRGRSVDHLAGESALPPVVLPVELSLVPDCVSSYEDVCNALRHAVHLCELLANQQGYIPNTYCLRVSLLQHLLTAVIPLPLPCSHPQRASRCFWAAS--PMRYETQADLLRLL 208          
BLAST of mRNA_Ecto-sp13_S_contig8504.19905.1 vs. uniprot
Match: A0A2R5GI29_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI29_9STRA)

HSP 1 Score: 137 bits (345), Expect = 5.360e-35
Identity = 65/126 (51.59%), Postives = 88/126 (69.84%), Query Frame = 1
Query:   10 FPLFGRLRRDASVEHLAGEHKPPPILRPVELTVVPDSVSTFEDVANTLTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRVIPIPLPNASPKASKECFWQASGRTMRYETQSHILRLLVRTAFH 387
            F  FGR  +  ++E LAG     PI RPV+LT+VPD VS+F DVAN L  C  +CTLL+ Q +++KN++ LR +L+ HL TRVIP+PLP + P+ + +CFW A+ R MRYETQ+ +LRLL   A H
Sbjct:  654 FVFFGRFAQQKAIEGLAGSSAKAPIYRPVQLTLVPDRVSSFNDVANALRHCCNICTLLAYQSDLVKNSYCLRVALVQHLFTRVIPLPLPLSHPRRNDQCFWAATNREMRYETQTDLLRLLCSVAEH 779          
BLAST of mRNA_Ecto-sp13_S_contig8504.19905.1 vs. uniprot
Match: A0A7S1XN75_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XN75_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.590e-34
Identity = 67/129 (51.94%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 SAVFPLFGRLRRDASVEHLAGEHKPPPILRPVELTVVPDSVSTFEDVANTLTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRVIPIPLPNASPKASKECFWQASGRTMRYETQSHILRLLVRTAFH 387
            ++ FPLFGR RRD  VEHL GE K PPI  PVEL+++PD V+ F++ A+ L   +++CTLL NQ   +KN+  LR +L+THL  RV+PIPLP   P+  + CFW  + R MR ETQ  IL LL R A H
Sbjct:  468 ASCFPLFGRFRRDTEVEHLKGEAKVPPIQLPVELSLIPDRVTDFQEAAHALRHAAQLCTLLGNQAEHIKNSATLRCTLVTHLALRVLPIPLPLDHPQREEHCFWAGALREMRRETQVDILGLLSRVARH 596          
BLAST of mRNA_Ecto-sp13_S_contig8504.19905.1 vs. uniprot
Match: A0A7S2W343_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W343_9STRA)

HSP 1 Score: 134 bits (336), Expect = 8.660e-34
Identity = 64/123 (52.03%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 SAVFPLFGRLRRDASVEHLAGEHKPPPILRPVELTVVPDSVSTFEDVANTLTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRVIPIPLPNASPKASKECFWQASGRTMRYETQSHILRLL 369
            S  + +FGR  RD SVE LAG     PI RP+ L++VPD VS F DVAN L  C+ +CTLL+ Q +++KN++ LR +LI H+ TRVIP+PLP  +P+  ++CFW A+ R MRYETQ+ +L+LL
Sbjct:  240 SIEYTMFGRFIRDDSVEGLAGTAAKTPIYRPIALSLVPDEVSDFNDVANALRHCTNLCTLLAYQSDLVKNSYCLRVALIQHIFTRVIPLPLPLNNPRRREQCFWAANSRKMRYETQTDLLKLL 362          
BLAST of mRNA_Ecto-sp13_S_contig8504.19905.1 vs. uniprot
Match: A0A7S3JZH5_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZH5_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.710e-31
Identity = 63/128 (49.22%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    4 AVFPLFGRLRRDASVEHLAGEHKPPPILRPVELTVVPDSVSTFEDVANTLTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRVIPIPLPNASPKASKECFWQASGRTMRYETQSHILRLLVRTAFH 387
            AVFPLFGR RRDA V+HLAG    PPI  PVEL+ VPD+++ +   A  L +   VCTLL+NQ +++++T+ LR +L+ H++TRV+P+PLP   P     CFW+     +RYETQ+ +LRLL   A H
Sbjct:  802 AVFPLFGRFRRDADVDHLAGSAVVPPIQLPVELSSVPDAITDYHSAAIALRKALHVCTLLANQAHLIRHTYLLRCALLQHVLTRVLPLPLPLDRPDGETACFWRCM--PIRYETQADLLRLLRMLARH 927          
BLAST of mRNA_Ecto-sp13_S_contig8504.19905.1 vs. uniprot
Match: R1CHE3_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CHE3_EMIHU)

HSP 1 Score: 124 bits (311), Expect = 2.040e-30
Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    7 VFPLFGRLRRDASVEHLAGEHKP------PPILRPVELTVVPDSVSTFEDVANTLTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRVIPIPLPNASPKASKECFWQASGRTMRYETQSHILRLL 369
            +F LFGR  R  SV+HLAGE         PP++ PVEL++VPD VS++EDV N L     +C LL+NQ+  + NT+ LR SL+ HL+T VIP+PLP + P+ +  CFW AS   MRYETQ+ +LRLL
Sbjct:  499 MFDLFGRALRGRSVDHLAGESALVGESALPPVVLPVELSLVPDCVSSYEDVCNALRHAVHLCELLANQQGYIPNTYCLRVSLLQHLLTAVIPLPLPCSHPQRASRCFWAAS--PMRYETQADLLRLL 623          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8504.19905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRI4_ECTSI7.610e-7399.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z7Z7_9STRA1.600e-4061.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TMJ4_9STRA1.680e-3858.54EF-Hand 1, calcium-binding site n=2 Tax=Monodopsid... [more]
A0A2R5FYY4_9STRA2.740e-3756.91Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A7S3T2B5_EMIHU3.850e-3554.17Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A2R5GI29_9STRA5.360e-3551.59Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A7S1XN75_9STRA2.590e-3451.94Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7S2W343_9STRA8.660e-3452.03Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A7S3JZH5_9STRA1.710e-3149.22Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
R1CHE3_EMIHU2.040e-3051.18Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8504contigEcto-sp13_S_contig8504:1193..2525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score245.7
Seed ortholog evalue1.1e-62
Seed eggNOG ortholog2880.D8LRI4
Preferred nameENAH
Model size387
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
Cds size387
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464121.0439-CDS-Ecto-sp13_S_contig8504:1192..12551681464121.0439-CDS-Ecto-sp13_S_contig8504:1192..1255Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8504 1193..1255 +
1681464121.0578055-CDS-Ecto-sp13_S_contig8504:1942..21341681464121.0578055-CDS-Ecto-sp13_S_contig8504:1942..2134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8504 1943..2134 +
1681464121.0697577-CDS-Ecto-sp13_S_contig8504:2393..25251681464121.0697577-CDS-Ecto-sp13_S_contig8504:2393..2525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8504 2394..2525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8504.19905.1prot_Ecto-sp13_S_contig8504.19905.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8504 1193..2525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8504.19905.1

>prot_Ecto-sp13_S_contig8504.19905.1 ID=prot_Ecto-sp13_S_contig8504.19905.1|Name=mRNA_Ecto-sp13_S_contig8504.19905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
SAVFPLFGRLRRDASVEHLAGEHKPPPILRPVELTVVPDSVSTFEDVANT
LTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRVIPIPLPNASPKASK
ECFWQASGRTMRYETQSHILRLLVRTAFH
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mRNA from alignment at Ecto-sp13_S_contig8504:1193..2525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8504.19905.1 ID=mRNA_Ecto-sp13_S_contig8504.19905.1|Name=mRNA_Ecto-sp13_S_contig8504.19905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8504:1193..2525+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGCGGTGTTTCCCCTTTTTGGCAGGCTAAGGAGGGACGCCTCTGTGGA GCACCTGGCCGGGGTGAGCGAGTTTTTTGTGCTACAGGCGACTACTGTCC TGGGTTGCACGGTCTTGGCTCCGATATAAGTGATGTTTGTGATAAAAGCC CGAGTATATTGAAGCCCCCTCGCATACCGGATAAGGAGGGTACCCAACCA CTCCTACGGCGCGTCGAGTTCATGCCAACTGAGTTGGACCCTCTTATATG GGAGCGAGGACTGTAGGAGGTTGATGAGAGCGTCGAATGTTGCGGCGGTC GTGTTGGAAGCGTGACGTTGTCTTGACCTCGACCGTGTGACGCGCTTTGT TTTAAGGAGGGTAGGGTAGGGTTGAGATTGACGTTGAATGAAATGTGTTG GGCGCGATGGGTTGAGGTTTGCACGGGTATGGTATGATATCATCTGGTAG TCCTGTATTGGGTGAAGGCGTGTACGCGTGACAGCTGACGGCGTTTGTTA TTCGAAGGGGCGATGTGGAATATCAACCGTCACTATAGATGGTGTGCCGG AGAAAATAGATACTGGAGTTCAACCCTTTCTCCTCGGCTGATAGACTGTT TCGATTCGGGCACAGGAGACCCCCCTGTATCCCCCCCCCCCCCCCCCCCT AGCCTGTCCCTGGAATCCCTACACGGCACCGTTATCGCCTGTGCTAGATT TTTGTTGGTTTGAAGCATGACCGCGCCAACACCACTTTCGCTTGACGCAG GAGCACAAACCGCCCCCGATTCTCCGTCCGGTGGAGTTAACCGTCGTGCC CGACTCGGTGTCGACGTTCGAGGACGTGGCCAACACGCTCACACGCTGCT CCGAGGTTTGCACCCTGCTGTCCAACCAGCGGAACGTGATGAAGAACACC TTCTTCCTGAGGGCCTCGCTCATCACACACCTCGTCACGAGGGTGAGTCG TTCCGGAGTGCTACCATACGGGATACCATAAGGCTGTTGCGGCGAAGGGA CAACTGCCTGTGTGGTTTTGTTTGATCTGACAGGAAGAGTCTTAGGGCCT ACGGTCGGTTGGAAGGGGATAAGGTGGCCTATCATGGGTAGAAAAGTTGT TTTTTCTTGAGGACGTCGCCTCTCAAGCACTTCTCATGAGAAGAGAATCG AGACAGAGACCGTCCCGTACACATACCCGTCCCGTACCCATACCCGCACA GGTGATACCCATTCCGCTGCCGAACGCGTCTCCAAAAGCTTCCAAGGAGT GCTTCTGGCAGGCTTCGGGGAGGACGATGCGATACGAGACTCAGTCACAC ATTCTCCGACTCCTGGTGAGGACTGCCTTCCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8504:1193..2525+

>mRNA_Ecto-sp13_S_contig8504.19905.1 ID=mRNA_Ecto-sp13_S_contig8504.19905.1|Name=mRNA_Ecto-sp13_S_contig8504.19905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8504:1193..2525+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGCGGTGTTTCCCCTTTTTGGCAGGCTAAGGAGGGACGCCTCTGTGGA
GCACCTGGCCGGGGAGCACAAACCGCCCCCGATTCTCCGTCCGGTGGAGT
TAACCGTCGTGCCCGACTCGGTGTCGACGTTCGAGGACGTGGCCAACACG
CTCACACGCTGCTCCGAGGTTTGCACCCTGCTGTCCAACCAGCGGAACGT
GATGAAGAACACCTTCTTCCTGAGGGCCTCGCTCATCACACACCTCGTCA
CGAGGGTGATACCCATTCCGCTGCCGAACGCGTCTCCAAAAGCTTCCAAG
GAGTGCTTCTGGCAGGCTTCGGGGAGGACGATGCGATACGAGACTCAGTC
ACACATTCTCCGACTCCTGGTGAGGACTGCCTTCCAT
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