mRNA_Ecto-sp13_S_contig8502.19903.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8502.19903.1
Unique NamemRNA_Ecto-sp13_S_contig8502.19903.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8502.19903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8502contigEcto-sp13_S_contig8502:3912..4541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size534
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464120.8227146-UTR-Ecto-sp13_S_contig8502:3911..39381681464120.8227146-UTR-Ecto-sp13_S_contig8502:3911..3938Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8502 3912..3938 -
1681464120.8607175-UTR-Ecto-sp13_S_contig8502:4328..45411681464120.8607175-UTR-Ecto-sp13_S_contig8502:4328..4541Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8502 4329..4541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464120.8345435-CDS-Ecto-sp13_S_contig8502:3938..41991681464120.8345435-CDS-Ecto-sp13_S_contig8502:3938..4199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8502 3939..4199 -
1681464120.8499968-CDS-Ecto-sp13_S_contig8502:4295..43281681464120.8499968-CDS-Ecto-sp13_S_contig8502:4295..4328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8502 4296..4328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8502.19903.1prot_Ecto-sp13_S_contig8502.19903.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8502 3939..4328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8502.19903.1

>prot_Ecto-sp13_S_contig8502.19903.1 ID=prot_Ecto-sp13_S_contig8502.19903.1|Name=mRNA_Ecto-sp13_S_contig8502.19903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
MLRTTQPSGLASGCDCRPLSIHVSCILLFKLVGCICSLCVSCSRKKLDLS
IHLLSPSLLLPLSLASAFPSTYRVSPCLHFLSFRPIPRIAHIVPPSS*
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mRNA from alignment at Ecto-sp13_S_contig8502:3912..4541-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8502.19903.1 ID=mRNA_Ecto-sp13_S_contig8502.19903.1|Name=mRNA_Ecto-sp13_S_contig8502.19903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8502:3912..4541- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGATTGTTTGCGCAAACGGCCACACAGTCGAGACCCGGGGGGTGACAGA
GCGTGTTGTTGTTGTACCCTGATACTATGCGCATCTCCTCTCACGCGGCG
CCCCCCCTCTCCGAAAGATCTGCGCGGTACGACGGGCCACTCAAGGCTCC
GTCCCGCCCCAGTCCTCAGTGTAACCGCCACGGATACAGCTGCGAACACT
GCGCAAACCAGGTATGCTGAGGACCACACAGCCCTCTGGACTAGCTGCTG
TTGTTCGCCAAGTATATGCGTTCGCCGCACCTACTTTCCTGGACATCGCG
CTGTGCTGCTTCCCGCTACTAATATCTCTCTACCAAATAAAGTCCGGCTG
TGATTGCCGCCCTCTCTCTATCCACGTGTCTTGCATTTTGCTATTCAAGC
TCGTTGGGTGTATATGCTCTCTTTGCGTCTCTTGTTCTCGTAAAAAACTC
GATCTCTCCATCCATCTTCTTTCTCCTTCCCTCCTGCTCCCTCTCTCTCT
AGCTTCAGCGTTTCCCTCCACCTACCGTGTCTCTCCTTGTCTTCATTTTT
TGTCATTTCGTCCCATCCCTCGTATAGCTCACATTGTTCCCCCCAGCAGC
TGAGCGTTGAGTGTCACCAGGGCTGCCCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8502:3912..4541-

>mRNA_Ecto-sp13_S_contig8502.19903.1 ID=mRNA_Ecto-sp13_S_contig8502.19903.1|Name=mRNA_Ecto-sp13_S_contig8502.19903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8502:3912..4541- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGAGGACCACACAGCCCTCTGGACTAGCTTCCGGCTGTGATTGCCG
CCCTCTCTCTATCCACGTGTCTTGCATTTTGCTATTCAAGCTCGTTGGGT
GTATATGCTCTCTTTGCGTCTCTTGTTCTCGTAAAAAACTCGATCTCTCC
ATCCATCTTCTTTCTCCTTCCCTCCTGCTCCCTCTCTCTCTAGCTTCAGC
GTTTCCCTCCACCTACCGTGTCTCTCCTTGTCTTCATTTTTTGTCATTTC
GTCCCATCCCTCGTATAGCTCACATTGTTCCCCCCAGCAGCTGA
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