mRNA_Ecto-sp13_S_contig1017.199.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1017.199.1
Unique NamemRNA_Ecto-sp13_S_contig1017.199.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: D7FU99_ECTSI (Similar to DNA primase large subunit, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU99_ECTSI)

HSP 1 Score: 802 bits (2071), Expect = 2.650e-289
Identity = 421/481 (87.53%), Postives = 437/481 (90.85%), Query Frame = 1
Query:    1 METCNPPGFYVDPPAFDIELEEFGMLPICRLEAVRLLREGQTTPAQVSEASPAQKALTADAKLLLLHGHGDRPSEAKHRRADLASHFILKLACCGGKGGEVQAGTAASKRDDSGGRCEDVDRRSSRREWFVRAERDLFKARLHWHLQQNEGGGSKEGIMGRCNEAASSADLGARASIADRLEALRLFYNLEWLQPVGPAAPDCSRMEKQRESGHEGSYAREGVSTSSFGGKGCGGXXXXXXXXXITGRRRRDGDDPFREHSRSSTPGACSSGEASHGTLERQLPPSSKRKKLPQSFAVKGGGDIEYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKGMPADEYASKRNQLSAL 1443
            METC PPG YVDPP FDIELEEFG LP+ RLEAVRLLREGQTTPAQV EASPAQKALTADA+LLLLHGHGDRPSEAK++RADLASHFILKLACCG  GG VQ GT ASKRDDS GRCE+VDRRSSRREWFVRAERDLF+ARLHWHLQQNEGGGSKEGI GRCN  ASSADLGARASIADRLEALR+FYNLEWLQPVGPAAPDCSRMEKQRESGHEGS+AREGV TSS+GGKGC  XXXXXXXXX       DGDDPFREHSRS +PGACS G+ASH TLERQLPPSS+RKKLP+S A KGG DI YLSCPFEKVLPLVRSRRVLLRDGKALLS DQLPEA+VQHFE RLREGLAIAERGL GVEAD RVA+VLRQVR AVDSLV GGGR G DADNRSMA ITR NIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFL NAGM+VDEILGLWREEFPKGMPADEYA KRNQLSAL
Sbjct:    1 METCKPPGLYVDPPDFDIELEEFGTLPMRRLEAVRLLREGQTTPAQVPEASPAQKALTADARLLLLHGHGDRPSEAKNQRADLASHFILKLACCGATGGGVQPGTEASKRDDSSGRCEEVDRRSSRREWFVRAERDLFEARLHWHLQQNEGGGSKEGIAGRCNGGASSADLGARASIADRLEALRIFYNLEWLQPVGPAAPDCSRMEKQRESGHEGSHAREGVCTSSYGGKGCXXXXXXXXXXXXXXXXXXDGDDPFREHSRSYSPGACSRGDASHVTLERQLPPSSERKKLPESVAFKGGSDIGYLSCPFEKVLPLVRSRRVLLRDGKALLSPDQLPEAVVQHFEGRLREGLAIAERGLPGVEADVRVAEVLRQVRSAVDSLVSGGGRRGLDADNRSMAIITRKNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLRNAGMEVDEILGLWREEFPKGMPADEYARKRNQLSAL 481          
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: A0A3Q2DE49_CYPVA (DNA primase large subunit n=3 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2DE49_CYPVA)

HSP 1 Score: 98.6 bits (244), Expect = 3.600e-18
Identity = 67/215 (31.16%), Postives = 109/215 (50.70%), Query Frame = 1
Query:  826 HGTLERQLPPSSKRKKLPQSFAVKGGG--DIEYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDAD-NRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKG-MPADEYASKRNQLSAL*FGIR 1458
            + T+  Q     K K L  S+ V G    + ++   PF+  L LVR+R+V L+DG A +  + +   ++  F  RL + LA+  R L  V +D+R+  +L  +  +           G+D    +++  I+   ID LA K FPLCMR+  + LR  HHL++  R+Q   FL   G+ +++ L  WR EF +G + AD++        A  +GIR
Sbjct:  146 YNTISVQEKNQLKEKLLNSSYIVSGVTLENEDFYKVPFQDALDLVRARKVYLKDGYAFIPHNDIVTIVLNDFRTRLSKALALTARSLPAVHSDERLQPLLNHLSHSY---------LGQDYSIQKNVGKISLEQIDSLAGKSFPLCMRQLHQALRENHHLRHGGRMQYGLFLKGIGLSLEQALQFWRMEFIRGKVDADKFDK------AYAYGIR 345          
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: A0A3Q2Q406_FUNHE (DNA primase large subunit n=3 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2Q406_FUNHE)

HSP 1 Score: 97.8 bits (242), Expect = 6.410e-18
Identity = 60/199 (30.15%), Postives = 104/199 (52.26%), Query Frame = 1
Query:  826 HGTLERQLPPSSKRKKLPQSFAVKGGG-DIEYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRD-ADNRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKG-MPADEY 1413
            + T+  +     K + L  S  V G   + ++   PF+  L LVR+R+V L++G A +   ++   ++  F  RL + LA+  R L  V +D+R+  +L  +  +           G+D +  +++  I+   ID LA K FPLCMR+  + LR  HHL+Y  R+Q   FL   G+ +++ L  W+ EF +G + AD++
Sbjct:  147 YNTISGEEKEQLKNELLNSSHGVSGVSLEHDFYKVPFQDALDLVRTRKVYLKEGYAYIPQSEIVAIVLNDFRTRLSKALALTARSLPAVHSDERLQPLLNHLSHSY---------FGQDYSGQKNVGKISLEQIDSLAGKSFPLCMRQLHKALRENHHLRYGGRMQYGLFLKGIGLSLEQALQFWKMEFIQGKVDADKF 336          
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: UPI0019042926 (eukaryotic and archaeal DNA primase, large subunit-domain-containing protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI0019042926)

HSP 1 Score: 97.4 bits (241), Expect = 7.890e-18
Identity = 63/187 (33.69%), Postives = 90/187 (48.13%), Query Frame = 1
Query:  862 KRKKLPQSFAVKGGGDI---EYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKGMPADEY 1413
            KR+ +  +F+++   D     +   P+ KV  LV  RRV L+ G A +        I Q F+ RL   L +  R L  ++ DDR+  ++    +    L    G HGR       A +T + ID LA KHFPLCMR     LR+  HLK+Q RLQ   FL   G+ +DE +  WR  +   M  D +
Sbjct:  166 KRQLMDTTFSIRTEEDFAKENFYRVPWTKVTDLVAQRRVFLKRGHAYVPSTLQSSIIFQEFQARLANALELTARALPRLDEDDRLLPIITHFSQGF--LAGVAGEHGRSVGQYGDA-VTADMIDDLAWKHFPLCMRHVHGGLRQNRHLKHQGRLQYTLFLKVLGLPIDEAIHFWRASYGNTMSDDRF 349          
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: A0A4Y2B4J4_ARAVE (DNA primase large subunit n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2B4J4_ARAVE)

HSP 1 Score: 97.1 bits (240), Expect = 1.190e-17
Identity = 59/170 (34.71%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  913 EYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRS---MATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKGMPADEY 1413
            ++   PF +VL LV++R+V L  G A +  D L   ++  +   L   LAI  R L  +E D R+  +L  + +            G D  N+    +  +T + ID L++  FPLCMR     LR+ HHLKY  RLQ   FL   G+ +D+ L  WREEF K M  D++
Sbjct:  189 KFYKVPFIEVLDLVKNRKVFLEKGYAYIPEDDLVITVLSAYRAHLSHALAITSRALPQLEEDTRLISMLSTLHQRY---------IGTDYTNKKPNFIGDVTPDQIDSLSKTSFPLCMRNLHDTLRKNHHLKYNGRLQYGLFLKGIGLSLDDALRFWREEFTKVMDVDKF 349          
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: A0A2L2YIM2_PARTP (DNA primase large subunit n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YIM2_PARTP)

HSP 1 Score: 97.1 bits (240), Expect = 1.220e-17
Identity = 58/170 (34.12%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  913 EYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRSMA---TITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKGMPADEY 1413
            ++   PF +VL L+++R+V L  G A +  + L   +V  +   L   LA+  R L  +E D R+  +L  + +            G D  N+  +    IT + ID L++  FPLCMR     LR+ HHLKY  RLQ   FL   G+ +D+ L  WREEF K M +D++
Sbjct:  190 KFYKVPFTEVLDLIKNRKVYLERGLAYIPEEDLVVTVVSAYRAHLSHALAVTSRALPQLEEDTRLISMLSTLHQRY---------IGTDYSNKKASFTGEITPDQIDNLSKVAFPLCMRNLHETLRKNHHLKYNGRLQYGLFLKGIGLSLDDALRFWREEFTKVMDSDKF 350          
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: A0A067MHZ5_9AGAM (DNA primase large subunit n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MHZ5_9AGAM)

HSP 1 Score: 96.7 bits (239), Expect = 1.320e-17
Identity = 55/166 (33.13%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  916 YLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKGMPADEY 1413
            Y   P+ +V  LV +RRV L+ G A + L   P  I Q F+  L   L    + L  ++ DDR+  +L  + +   + V G  R G   D      +T + +D++A KHFP+CMR     LR + HLK+  RLQ   FL   G+ V+E +  WR+ + + M  D++
Sbjct:  176 YYKVPWTQVPDLVATRRVYLKGGFAYVPLSLQPNIIYQKFQQNLERALEQTAKALPRLDEDDRLVPILEHLSKGFVAGVSGEYRAGEGID----GEVTADMVDEIARKHFPMCMRSLHETLRADRHLKHAGRLQFTLFLKAMGVSVEEAIVFWRKGYGQSMTDDKF 337          
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: PRI2_ARATH (Probable DNA primase large subunit n=13 Tax=Brassicaceae TaxID=3700 RepID=PRI2_ARATH)

HSP 1 Score: 95.5 bits (236), Expect = 2.670e-17
Identity = 61/171 (35.67%), Postives = 90/171 (52.63%), Query Frame = 1
Query:  907 DIE--YLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKGMPADEY 1413
            D+E  Y   PFE+V  LV SRRVLL+ G A ++  QL   +V  F   L + L +  R        +R  D L  +  A+ +   G       + +   A I+  +IDQ+++  FPLCMR     LR +HHLK+  R+QL  FL   G+K+D+ L  WREEF K + ++ +
Sbjct:  168 DVENIYYKVPFEEVPDLVASRRVLLQKGFAFVAGTQLVSLVVTQFRSHLSKALILTNRKWT-TTIREREKDRLTPIVEALSTSYLGPDY----SQSNEYADISLKDIDQVSKSSFPLCMRHLFEKLREDHHLKHGGRMQLGLFLKGVGLKLDDALAFWREEFTKKVGSERF 333          
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: A0A165H454_9APHY (DNA primase large subunit n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165H454_9APHY)

HSP 1 Score: 95.1 bits (235), Expect = 4.550e-17
Identity = 65/187 (34.76%), Postives = 91/187 (48.66%), Query Frame = 1
Query:  847 LPPSSKRKKLPQ------SFAVKGGGDIE-YLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEF 1386
            +P S + KK  Q      S A+K     E Y    + +V  LV  RRVLL+ G A +   +    + Q F+ RL + L +  + L  ++ D R+  +L  + +     + G       A + S   IT + ID LA KHFPLCMR     LRREHHLK+  RLQ   FL   G+ +DE +  WR  F
Sbjct:  159 IPVSDEEKKQYQHELAAASPALKDAALSERYYKVKWTRVPDLVEKRRVLLKGGMAYVPSREQSSIVFQEFQTRLTKALEMTAKALPRLDEDTRIVPILDNLSQG---FLAGVSSEWSTATSSSAGEITADMIDDLARKHFPLCMRNLHETLRREHHLKHFGRLQYGLFLKVLGLSIDEAITFWRRSF 342          
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Match: UPI001FAD3DAF (DNA primase large subunit isoform X1 n=3 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FAD3DAF)

HSP 1 Score: 95.1 bits (235), Expect = 5.290e-17
Identity = 59/188 (31.38%), Postives = 101/188 (53.72%), Query Frame = 1
Query:  862 KRKKLPQSFAVKGGG--DIEYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLREGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDAD-NRSMATITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMKVDEILGLWREEFPKG-MPADEY 1413
            K K L  S+ + G    + ++   PF+  L LVR+R+V L++G A +  +++   ++  F  RL + LA+  R L  V +D+R+  +L  +  +           G+D    +++  I+   ID LA K FPLCMR+  + LR  HHL++  R+Q   FL   G+ +++ L  WR EF +G + AD++
Sbjct:  184 KEKLLISSYGINGVTLEEQDFYKVPFQDALDLVRTRKVYLKEGYAYIPHNEIVAIVLNDFRTRLSKALALTARSLPAVHSDERLQPLLNHLSHSY---------LGQDYSVQKNVGKISLEQIDSLAGKSFPLCMRQLHQALRDNHHLRHGGRMQYGLFLKGIGLSLEQALQFWRMEFIRGKVDADKF 362          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1017.199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU99_ECTSI2.650e-28987.53Similar to DNA primase large subunit, partial n=2 ... [more]
A0A3Q2DE49_CYPVA3.600e-1831.16DNA primase large subunit n=3 Tax=Cyprinodon TaxID... [more]
A0A3Q2Q406_FUNHE6.410e-1830.15DNA primase large subunit n=3 Tax=Fundulus heteroc... [more]
UPI00190429267.890e-1833.69eukaryotic and archaeal DNA primase, large subunit... [more]
A0A4Y2B4J4_ARAVE1.190e-1734.71DNA primase large subunit n=1 Tax=Araneus ventrico... [more]
A0A2L2YIM2_PARTP1.220e-1734.12DNA primase large subunit n=2 Tax=Parasteatoda tep... [more]
A0A067MHZ5_9AGAM1.320e-1733.13DNA primase large subunit n=1 Tax=Botryobasidium b... [more]
PRI2_ARATH2.670e-1735.67Probable DNA primase large subunit n=13 Tax=Brassi... [more]
A0A165H454_9APHY4.550e-1734.76DNA primase large subunit n=1 Tax=Laetiporus sulph... [more]
UPI001FAD3DAF5.290e-1731.38DNA primase large subunit isoform X1 n=3 Tax=Girar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1017contigEcto-sp13_S_contig1017:15209..18174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score812.4
Seed ortholog evalue1.1e-232
Seed eggNOG ortholog2880.D7FU99
Model size1679
KEGG rclassRC02795
KEGG koko:K02685
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.DNA primase activity
EggNOG OGsCOG2219@1,KOG2267@2759
Cds size1446
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.6515522-UTR-Ecto-sp13_S_contig1017:15208..154351681462512.6515522-UTR-Ecto-sp13_S_contig1017:15208..15435Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1017 15209..15435 -
1681462512.6620007-UTR-Ecto-sp13_S_contig1017:15977..159831681462512.6620007-UTR-Ecto-sp13_S_contig1017:15977..15983Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1017 15978..15983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462512.6697915-CDS-Ecto-sp13_S_contig1017:15983..160791681462512.6697915-CDS-Ecto-sp13_S_contig1017:15983..16079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1017 15984..16079 -
1681462512.6804237-CDS-Ecto-sp13_S_contig1017:16434..176061681462512.6804237-CDS-Ecto-sp13_S_contig1017:16434..17606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1017 16435..17606 -
1681462512.6880822-CDS-Ecto-sp13_S_contig1017:17996..181741681462512.6880822-CDS-Ecto-sp13_S_contig1017:17996..18174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1017 17997..18174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1017.199.1prot_Ecto-sp13_S_contig1017.199.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1017 15984..18174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1017.199.1

>prot_Ecto-sp13_S_contig1017.199.1 ID=prot_Ecto-sp13_S_contig1017.199.1|Name=mRNA_Ecto-sp13_S_contig1017.199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=482bp
METCNPPGFYVDPPAFDIELEEFGMLPICRLEAVRLLREGQTTPAQVSEA
SPAQKALTADAKLLLLHGHGDRPSEAKHRRADLASHFILKLACCGGKGGE
VQAGTAASKRDDSGGRCEDVDRRSSRREWFVRAERDLFKARLHWHLQQNE
GGGSKEGIMGRCNEAASSADLGARASIADRLEALRLFYNLEWLQPVGPAA
PDCSRMEKQRESGHEGSYAREGVSTSSFGGKGCGGGGRSGSGGGITGRRR
RDGDDPFREHSRSSTPGACSSGEASHGTLERQLPPSSKRKKLPQSFAVKG
GGDIEYLSCPFEKVLPLVRSRRVLLRDGKALLSLDQLPEAIVQHFEDRLR
EGLAIAERGLAGVEADDRVADVLRQVRRAVDSLVRGGGRHGRDADNRSMA
TITRNNIDQLAEKHFPLCMRRTLRILRREHHLKYQARLQLISFLGNAGMK
VDEILGLWREEFPKGMPADEYASKRNQLSAL*
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mRNA from alignment at Ecto-sp13_S_contig1017:15209..18174-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1017.199.1 ID=mRNA_Ecto-sp13_S_contig1017.199.1|Name=mRNA_Ecto-sp13_S_contig1017.199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2966bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1017:15209..18174- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAACGTGTAACCCTCCAGGGTTCTATGTCGATCCGCCTGCTTTCGA CATCGAACTGGAGGAGTTCGGCATGTTGCCAATTTGTAGGCTAGAGGCCG TTCGACTTCTACGTGAGGGACAAACTACGCCGGCGCAGGTGTCGGAGGCG AGCCCGGCGCAAAAAGCGCTAACGGCCGGTGAGTCATGTCTGGCTACACA AGGTGAACGACTTTTGCGATTCTCGAGACGGCTATGCTTACCGGGCATTC GCCTGTGGCTCATGCTGTTTGCGGCCTCCAGCAACAGGTTGCCAACGGAC ACTGCTTCATGAACGGAGACTGTGTTCGTGGCTGGCTCTATTGCCGCGGC ACCGCTACGGGCGTCGTTGACACAAGGCTACAGCAGCAGACTTAAACTAC CGGTCTTTGCGACGACGGACTTCATGTTATGAGGTGTGAACGATGCGCTG CAAGCTCGCACGATCACTTCCTAGTATTACAACGTTACAGTGCGGATTCG TTTCGCACTGTAAGCGCCATGACTGCTATCCCAAACTCCGATTATTTCTC CGCACGAACTCACGCTAGATGCTAAGCTACTTCTCCTCCACGGGCACGGC GATCGGCCCTCAGAGGCCAAGCATCGACGCGCAGACCTCGCGAGCCACTT CATACTGAAGCTAGCGTGCTGTGGTGGAAAAGGCGGAGAAGTGCAGGCGG GAACCGCAGCCAGCAAGAGGGACGACAGCGGTGGTCGGTGCGAGGATGTT GACCGGAGGAGCAGCAGGCGGGAATGGTTCGTTCGTGCAGAGAGGGACTT GTTTAAAGCTCGTCTCCACTGGCATCTCCAGCAAAACGAGGGGGGGGGCA GCAAGGAAGGAATCATGGGGCGATGTAACGAAGCAGCAAGTAGCGCCGAT CTTGGGGCACGTGCGAGTATTGCGGACCGTTTGGAGGCCCTGAGATTGTT TTATAACCTGGAATGGCTGCAGCCGGTTGGACCGGCAGCTCCAGATTGCA GCCGCATGGAGAAGCAGAGAGAAAGTGGGCATGAAGGTTCTTACGCGAGG GAAGGCGTTAGCACCAGCAGTTTCGGTGGTAAAGGATGCGGCGGTGGTGG TAGGAGTGGAAGCGGTGGAGGTATCACCGGGAGAAGGCGACGAGATGGGG ATGACCCCTTCCGAGAACACTCCCGCTCATCTACTCCTGGCGCGTGTTCA AGTGGAGAAGCAAGTCACGGGACTCTTGAGCGACAGCTACCTCCTTCATC AAAGAGGAAGAAGCTACCCCAATCCTTTGCCGTCAAAGGCGGTGGCGACA TCGAATACCTGTCGTGTCCGTTCGAGAAAGTTCTTCCGCTTGTCCGATCC CGCCGGGTACTGCTTAGGGACGGGAAGGCGCTACTCTCGCTAGATCAGCT TCCTGAGGCGATCGTACAGCACTTTGAAGATCGTCTTAGGGAGGGACTCG CCATCGCGGAGCGCGGCTTGGCCGGGGTCGAGGCGGACGACAGGGTGGCG GACGTTTTGAGACAGGTCAGAAGAGCAGTGGATTCCTTGGTTCGCGGCGG CGGGCGGCATGGCCGTGACGCAGACAACCGATCGATGGCCACGATCACCC GGAATAACATCGACCAGCTTGCCGAGAAGCACTTCCCGCTCTGCATGCGG AGGACCCTTCGCATCCTTCGACGTGAGCACCACCTCAAGTATCAGGCGCG GCTGCAGCTCATCAGCTTCCTCGGGAACGCCGGGATGAAGGTGCGCGTCA GCGTCGAAGGAAGGTTGCAAGCTTTATTACGATATGACGATACATGTGGC CCCGGGCCTTACGCACGCCGCCTTTGTCCATGCGCTCCGCGCCGTGCATC GAATCTCGTCAGCATGTGTGGGACGCATGAATGCAGGTTCGGAGATTCGG GTGCTCAGTGTCTGTCGTACAGCATTCGGTTTTTGAAGAGGGACGGTTCC CTGATGGGTCGCTCAGCGCAACCAAAGAAGGAATGATCGCGGATGAAACC TCAGGAACCCCATCTTGTTCATTTCTCTAGCTCCTTTTGCAACCTTCCAC GATGTCTACGTTGCTGCTTTACTTTGTCGTACGTGGCTTCGGCAGGTTGA TGAGATTCTGGGTCTTTGGCGGGAGGAGTTCCCGAAAGGCATGCCGGCGG ACGAGTATGCTAGCAAGAGAAACCAGCTAAGCGCACTCTGATTTGGTGTA TTTTTGGAAGAACGGGTTGATTAGGCGGAAAACATTGCACTTGCGAGTGA TAAGTGAGTCGTGCAGCTTCGTCCTACTGATTCTGGAACTATTTGGTAGA ATGGGTGGCTCGGCAATTCTCACAAACAGCAGGCCGATGTAGCGCTACCA ACGTGTATTGTGGGATTGAACTTGCGTTTCTGTACCTCAGACATTCAGAA ACAAGAGGTGCTGGACGGAGGCCAGCACATTTTGTTTCACATTCACTCGG CAACAACAACGGAAGATATTGAAGAAATTTTCAATTGGGGATTCCGCGAT GTACTGGCGCCGGGAGCACTTTTGCTCGGCACTGATGAAAGACACACCCA GCACGGGAGACGACGCTTGTACTTGAAAATTCGTGGCTTTCGTCCGGGTG TACTGATATGTGTCCGGCGGATAACACGTGGTCTAGGAGGACGTAGCACC TATCTCGTGGGTTTGATTGCACATCGAATATTTGCCAGGAGGCTAACGCG TTGCCCGCCCTCCACAAACTGTTTTCCTTTCCTTTCTAGATACGAATATA GTCTTCGACACCTGTGTGGCCTGGAGGGAAAGCGTAAGGCATACCGCCCG CAGTCCTGCGCCCGAATCGCCTCCGTGGGATGGGGTGGCTCGGGCGAAGG GGGCTACGGCCACGGCTGCCCGTACCACTCTCGCCCGAAACAGGCAGGTG GCGGCGGCAGCGGTAGCGGGCAATCAACGGCCGGCGGCTCGAACGACACC AGCCTTCGAGGTATGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1017:15209..18174-

>mRNA_Ecto-sp13_S_contig1017.199.1 ID=mRNA_Ecto-sp13_S_contig1017.199.1|Name=mRNA_Ecto-sp13_S_contig1017.199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1446bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1017:15209..18174- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAACGTGTAACCCTCCAGGGTTCTATGTCGATCCGCCTGCTTTCGA
CATCGAACTGGAGGAGTTCGGCATGTTGCCAATTTGTAGGCTAGAGGCCG
TTCGACTTCTACGTGAGGGACAAACTACGCCGGCGCAGGTGTCGGAGGCG
AGCCCGGCGCAAAAAGCGCTAACGGCCGATGCTAAGCTACTTCTCCTCCA
CGGGCACGGCGATCGGCCCTCAGAGGCCAAGCATCGACGCGCAGACCTCG
CGAGCCACTTCATACTGAAGCTAGCGTGCTGTGGTGGAAAAGGCGGAGAA
GTGCAGGCGGGAACCGCAGCCAGCAAGAGGGACGACAGCGGTGGTCGGTG
CGAGGATGTTGACCGGAGGAGCAGCAGGCGGGAATGGTTCGTTCGTGCAG
AGAGGGACTTGTTTAAAGCTCGTCTCCACTGGCATCTCCAGCAAAACGAG
GGGGGGGGCAGCAAGGAAGGAATCATGGGGCGATGTAACGAAGCAGCAAG
TAGCGCCGATCTTGGGGCACGTGCGAGTATTGCGGACCGTTTGGAGGCCC
TGAGATTGTTTTATAACCTGGAATGGCTGCAGCCGGTTGGACCGGCAGCT
CCAGATTGCAGCCGCATGGAGAAGCAGAGAGAAAGTGGGCATGAAGGTTC
TTACGCGAGGGAAGGCGTTAGCACCAGCAGTTTCGGTGGTAAAGGATGCG
GCGGTGGTGGTAGGAGTGGAAGCGGTGGAGGTATCACCGGGAGAAGGCGA
CGAGATGGGGATGACCCCTTCCGAGAACACTCCCGCTCATCTACTCCTGG
CGCGTGTTCAAGTGGAGAAGCAAGTCACGGGACTCTTGAGCGACAGCTAC
CTCCTTCATCAAAGAGGAAGAAGCTACCCCAATCCTTTGCCGTCAAAGGC
GGTGGCGACATCGAATACCTGTCGTGTCCGTTCGAGAAAGTTCTTCCGCT
TGTCCGATCCCGCCGGGTACTGCTTAGGGACGGGAAGGCGCTACTCTCGC
TAGATCAGCTTCCTGAGGCGATCGTACAGCACTTTGAAGATCGTCTTAGG
GAGGGACTCGCCATCGCGGAGCGCGGCTTGGCCGGGGTCGAGGCGGACGA
CAGGGTGGCGGACGTTTTGAGACAGGTCAGAAGAGCAGTGGATTCCTTGG
TTCGCGGCGGCGGGCGGCATGGCCGTGACGCAGACAACCGATCGATGGCC
ACGATCACCCGGAATAACATCGACCAGCTTGCCGAGAAGCACTTCCCGCT
CTGCATGCGGAGGACCCTTCGCATCCTTCGACGTGAGCACCACCTCAAGT
ATCAGGCGCGGCTGCAGCTCATCAGCTTCCTCGGGAACGCCGGGATGAAG
GTTGATGAGATTCTGGGTCTTTGGCGGGAGGAGTTCCCGAAAGGCATGCC
GGCGGACGAGTATGCTAGCAAGAGAAACCAGCTAAGCGCACTCTGA
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