mRNA_Ecto-sp13_S_contig124.1990.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig124.1990.1
Unique NamemRNA_Ecto-sp13_S_contig124.1990.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig124.1990.1 vs. uniprot
Match: D8LBN4_ECTSI (V-SNARE coiled-coil homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN4_ECTSI)

HSP 1 Score: 2211 bits (5728), Expect = 0.000e+0
Identity = 1183/1292 (91.56%), Postives = 1204/1292 (93.19%), Query Frame = 1 
Query:   58 MRSFLSQVGLKSSAGEEQWERPANDGPDADAADVMGSFASPKRLGHHGSISDACILSYEPTNGLMAVASRGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFVTPSLLVGVTATGAVLVWDLAAGGRGGSIPFPPDPATGLDERVTSVHAHGGGDGGGPASDAHEERYVFLGFESGRVRVAQVFPVCRESGYTVEPQNTSHGAPDELLQAPGKSLGAVTAIASFGDRDGGGRGFGIFGHRCGGIVVWDWVRRKRLAFRSLGKSQGKKEEEEDGDYGEEDFEDREGREVTSLALHPSGEAFAAGFAAGCYAIFSVSSSPSHEIGPPRWVREVGDDGSCPREGPTIVRTAVSLVRWVRVRAAGAGRTSGLVVAGGVEIEEGEDPDGVSLLVPSSEAVGARGXXXXXXXXXKKKD-VVTAAKAALETAVFVPFAMGQERLSHVHCVLSDAGAPTREPHRAGTRSSGDLSLDARVGVKDEPESAAAHEDEVEVAEELVVLGLVKWKEEFLGDDGRLHFRLASSIQACPIQTSPYVALLQLAPERFGPHLSGFATVTAVACTPLLSSSTILDFMTCLGAEEAEEEGRNGSQTTAPPLLRGGYLRWPDSVPSRRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDAVCLSEGRVVMREVPSGAVLLGSVPAAGLGSPEEGAGNVAVTALDVWVERDHVAAAA--AAAGRNACWVAVGLESGDARVIVLSSRMEAGSSSPDFPSGSGGGSKAGSGGGTPLAEKPVEVSDVKLGDDRTTEDASAKGGSSGGRLLKRFLKRGAGQQPSPGDEEGAMEDTELEAAIAEARAEARAIAALEESREGAPGNAGTVGPRGTAVDDARKRESVGGEGKAQETDNQEESDHLRQELSEAMADEGAWSGSVVPPLPKRPPTKHTPEADKGEEEKLRLDEPPKASLIQLALRLHSHAVRCVALSFDARGSALSLVVADEAGVVSVTDVSTGSASLLPMRVPQSRPCRPSVTIGPMPSALSGGQAPEPGTSGALFVLLEGWLNVFDLASRDPVDFVQVPGLAPPIDEGHTSGGGGG-RAGVREDDFTGSAGRTRSRERSEETPWLACVDKRGLPLLPYASEPFSSSFSPPPRKDDAGTEADGGKIDPEDAPVHSHTIWVSPVPSRTALDDYHEHELQVLSDTPPPEPLLLVVRGATAIVLAISRGDANGVTSSVFARRGSVSPDTATFKGRSGAELVVQSRGTLPPAGRSAVPPTIDGAGVCMVAAAGREGLEAATMPDCEEARRRWRRSPCAISSGSSRSKGWQG 3921
            MRSFLSQVGLKSSAGEEQ E P NDGPDADAADVMGSFASPKRLGHHGSISDAC+LSYEPTNGLMAVASRGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLF TPSLLVGVTATGAVLVWDLAAGGRGGSIP PPDPATGLDERVTSVH+HG       ASDAHEERYVFLGFESGRVRVAQVFPV RESGYTVEPQNTSHGAPDELLQAPGKSLGAVTAIASFGDRDGGG GFGIFGHRCGGIVVWDWVRRKRLA RSLGKSQGKKE          DFEDREGREVTSLALHPSGEAFAAGFAAGCYA+FSVSSSPSHE GPPRWVREVGDDGSCPREGPTIVRTAVSLVRWVRVR AGAGRTSGLVVAGGVEIEEGE+PDGVSLLVPSSEAVGARGXXXXXXXXX     VVTAAKAALETAVFVPFAMGQERLSHVHCVLS  GAPTREP RAGTRSSGDLS DARVG KDEP+SAAA EDEVEVAEELVVLGLVKW EEFLGDDGRLHFRLASSIQACPIQTSPYVALLQLAPERFGPHLSGFATVTAVA TPLLSSSTILDFMTCLGAE+ +EEGRNGSQTTA PLLRGGYLRWPDSVPSRRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDAVCLSEGRVVMREVPSG VLLGSVPAAGLGSPEEGAGN AVTALDVWVERDHVAAAA  AAAGRNACWVAVGLESGDARVIVLS+RMEAG S+P+FPSGSGGG KAGSGGGTPLAEKPVEVSDVKLGDD TT D S KG S GGRLLKRFLKRG GQQPSPGDEEGAMEDTELEAAIAEARAEARAIAALEESREGAP NA T  PRGT VDDARKRESVGGEG+AQETD+ EESDHLRQELSEAMADEGAWSGSV+ PLPKRPP KH PEA+KGEEEKLRLDEPPKASLIQLALRLHSHAVRCVALSFDARGSAL LVVADEAGVVSVTDVSTGSASLLPMRVPQSRPCRPSVTIGPMPSALSGGQ PEPG SGALFVLLEGWLNVFDLASRDPVDFVQVPGLAPP D+          RAG+REDDF GSAGRTRSRERSEETPWLACVDK GLPL PYASEPFSSSFSPPPRKD AGTEADG K+DPEDAPVHSHTIWVSPVPSRTALDDYHEHELQVLSDTPPPEPLLLVVRGATA+VLAISR DA+GVTSSVFARRGSVSPD ATFKGRSGAELVV+SRGTLPPA RSAVPPTIDGAGVC+VAAAG EGLEAATMPDCEEARRRWRRSPCAI SGSSRSKGWQG
Sbjct:    1 MRSFLSQVGLKSSAGEEQREGPENDGPDADAADVMGSFASPKRLGHHGSISDACVLSYEPTNGLMAVASRGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFATPSLLVGVTATGAVLVWDLAAGGRGGSIPSPPDPATGLDERVTSVHSHGXXXXXXLASDAHEERYVFLGFESGRVRVAQVFPVYRESGYTVEPQNTSHGAPDELLQAPGKSLGAVTAIASFGDRDGGGGGFGIFGHRCGGIVVWDWVRRKRLALRSLGKSQGKKEXXXXXXXX--DFEDREGREVTSLALHPSGEAFAAGFAAGCYAVFSVSSSPSHETGPPRWVREVGDDGSCPREGPTIVRTAVSLVRWVRVRGAGAGRTSGLVVAGGVEIEEGEEPDGVSLLVPSSEAVGARGXXXXXXXXXXXXXXVVTAAKAALETAVFVPFAMGQERLSHVHCVLSGTGAPTREPRRAGTRSSGDLSEDARVGGKDEPDSAAAQEDEVEVAEELVVLGLVKWNEEFLGDDGRLHFRLASSIQACPIQTSPYVALLQLAPERFGPHLSGFATVTAVASTPLLSSSTILDFMTCLGAEQVQEEGRNGSQTTASPLLRGGYLRWPDSVPSRRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDAVCLSEGRVVMREVPSGTVLLGSVPAAGLGSPEEGAGNAAVTALDVWVERDHVAAAAGAAAAGRNACWVAVGLESGDARVIVLSNRMEAGCSNPEFPSGSGGGCKAGSGGGTPLAEKPVEVSDVKLGDDGTTGDDSTKGSSGGGRLLKRFLKRGTGQQPSPGDEEGAMEDTELEAAIAEARAEARAIAALEESREGAPENAETPEPRGT-VDDARKRESVGGEGEAQETDDHEESDHLRQELSEAMADEGAWSGSVMSPLPKRPPPKHAPEAEKGEEEKLRLDEPPKASLIQLALRLHSHAVRCVALSFDARGSALVLVVADEAGVVSVTDVSTGSASLLPMRVPQSRPCRPSVTIGPMPSALSGGQTPEPGASGALFVLLEGWLNVFDLASRDPVDFVQVPGLAPPSDDSXXXXXXXXXRAGIREDDFAGSAGRTRSRERSEETPWLACVDKHGLPLQPYASEPFSSSFSPPPRKDHAGTEADGVKLDPEDAPVHSHTIWVSPVPSRTALDDYHEHELQVLSDTPPPEPLLLVVRGATAVVLAISRRDADGVTSSVFARRGSVSPDAATFKGRSGAELVVRSRGTLPPARRSAVPPTIDGAGVCLVAAAGGEGLEAATMPDCEEARRRWRRSPCAIPSGSSRSKGWQG 1289
[Close]
BLAST of mRNA_Ecto-sp13_S_contig124.1990.1 vs. uniprot
Match: A0A6H5K0L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L8_9PHAE)

HSP 1 Score: 2176 bits (5638), Expect = 0.000e+0
Identity = 1175/1338 (87.82%), Postives = 1204/1338 (89.99%), Query Frame = 1 
Query:   58 MRSFLSQVGLKSSAGEEQWERPANDGPDADAADVMGSFASPKRLGHHGSISDACILSYEPTN-----------------------------GLMAVASRGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFVTPSLLVGVTATGAVLVWDLAAGGRGGSIPFPPDPATGLDERVTSVHAHGGGDGGGPASDAHEERYVFLGFESGRVRVAQVFPVCRESGYTVEPQNTSHGAPDELLQAPGKSLGAVTAIASFGDRDGGGRGFGIFGHRCGGIVVWDWVRRKRLAFRSLGKSQGKKEEEEDGDYGEEDFEDREGREVTSLALHPSGEAFAAGFAAGCYAIFSVSSSPSHEIGPPRWVREVGDDGSCPREGPTIVRTAVSLVRWVRVRAAGAGRTSGLVVAGGVEIEEGEDPDGVSLLVPSSEAVGARGXXXXXXXXXKKKDVVTAAKAALETAVFVPFAMGQERLSHVHCVLSDAGAPTREPHRAGTRSSGDLSLDARVGVKDEPESAAAHEDEVEVAEELVVLGLVKWKEEFLGDDGRLHFRLASSIQACPIQTSPYVALLQLAPERFGPHLSGFATVTAVACTPLLSSSTILDFMTCLGAEEAEEEGRNGSQTTAPPLLRGGYLRWPDSVPSRRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDAVCLSEGRVVMREVPSGAVLLGSVPAAGLGSPEEGAGNVAVTALDVWVERDHVAAAAAAAGRNACWVAVGLESGDARVIVLSSRMEAGSSSPDFPSGSGGGSKAGSGGGTPLAEKPVEVSDVKLGDDRTTEDASAKGGSSGGRLLKRFLKRGAGQQPSPGDEEGAMEDTELEAAIAEARAEARAIAALEESREGAPGNAGTVGPRGTAVDDARKRESVGGEGKAQETDNQEESDHLRQELSEAMADEGAWSGSVVPPLPKRPPTKHTPEADKGEEEKLRLDEPPKASLIQLALRLHSHAVRCVALSFDARGSALSLVVADEAGVVSVTDVSTGSASLLPMRVPQSRPCRPSVTIGPMPSALSGGQAPEPGTSGALFVLLEGWLNVFDLASRDPVDFVQVPGLAPPIDEGHTSGGGGG--RAGVREDDFTGSAGRTRSRERSEETPWLACVDKRGLPLLPYASEPFSSSFSPPPRKDDAGTEADGGKIDPEDAPVHSHTIWVSPVPSRTALDDYHEHELQVLSDTPPPEPLLLVVRGATAIVLAISRGDANGVTSSVFARRGSVSPDTATFKGRSGAELVVQSRGTLPPAGRSAVPPTIDGAGVCMVAAAGREGLE-------------------AATMPDCEEARRRWRRSPCAISSGSSRSKGWQG 3921
            MR F SQVGLKSS GEEQ E P  +GPDADAADVMGSFASPKRLGHHGSISDAC+LSYEPTN                             GLMAVAS GGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLF TPSLLVGVTATGAVLVWDLAAGGRGGSIP PPDP TGLDERVTSVHAHGGGDGGGPASDAH+ERYVFLGFESGRVRVAQVFPVCRESGYTVEPQNTSHGAPDELLQAPGKSLGAVTAIASFGDRDG G GFGIFGHRCGGIVVWDWVRRKRLA RSLGKSQGKKE      Y EE+FED++G EVTSLALHPSGEAFAAGFAAGCYA+FSVSSSPSHE   PRWVREVGDDGSCPREGPTIVRTAVSLV+WVRVR AG GRTSGLVVAGGVEIEEGE+PDGVSLLV S+EAVGARGXXXXXXXXX   DVVTAAKAALETAVFVPFAMGQERLSHVHCVLS AGAPT+EPH AGTRSSGDLS DA V  KDEPE AAA EDEVEV EELVVLGLVKW EEFLGDDGRLHFRLASSIQACPI+TSPYVALLQLAPERFGPHLSGFATVTAVACTPLLSSSTILDFMTCLGAE+AEEEG+NGSQTTAPPLLRGGYLRWPDSVPSRRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDAVCLSEGRVVMREVPSGAVLLGSVPAAGLGSPEEGAGN AVTALDVWVERDHVAAA  A GRNACWVAVGLESGDARVIVLS+RMEAGSSSPDFP GSGG SKA SGGGTPLAEKPVEVSDVKLGDD TT DASAKG S GGRLLKRFLKRGAGQQPS GDEEGAMEDTELEAAIA+ARAEARAI ALEESREGAPGNA T  PRG AVDDARKRESVGGEG+AQETD+Q ESDHLRQELSEAMADEGAWSGSV+PP PKRPPTKHTPEA+ GEEEKL LDEPPKASLIQLALRLHSHAVRCVALSFDARGSAL+LVVADEAGVVSVTDVSTGSASLLPMRVPQSRPCRPSVTIGPMPSALSGG AP+PG SGALFVLLEGWLNVFDLASRDPVDFVQVPGLAPP D            RAG+REDDF GSAGRTRSRER EETPWLACVD RGLPLLPYASEPFSSSFSPPPR+DDA T+ADGGKIDPEDAPVHSHTIWVSPVPSRTALDDYHEHELQVLSDTPPPEPLLLVVRGATA+VLAISR DA+GVTSSVFARRGSVSPD ATFKGRSGAELVV+SRGTLPPAGRSAVPPTIDG GVCMVAAAG  GLE                   AATMP+CEEARRRWRRSPCAISSGSSRSKGWQG
Sbjct:    1 MRRFFSQVGLKSSDGEEQREGPETNGPDADAADVMGSFASPKRLGHHGSISDACVLSYEPTNPPYSSQLGRPSMHSRCQSELLLLFCTRAQGLMAVASCGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFATPSLLVGVTATGAVLVWDLAAGGRGGSIPSPPDPVTGLDERVTSVHAHGGGDGGGPASDAHKERYVFLGFESGRVRVAQVFPVCRESGYTVEPQNTSHGAPDELLQAPGKSLGAVTAIASFGDRDGCG-GFGIFGHRCGGIVVWDWVRRKRLALRSLGKSQGKKEXXXXX-YEEENFEDQKGHEVTSLALHPSGEAFAAGFAAGCYAVFSVSSSPSHEADLPRWVREVGDDGSCPREGPTIVRTAVSLVQWVRVRGAGVGRTSGLVVAGGVEIEEGEEPDGVSLLVLSTEAVGARGXXXXXXXXXXX-DVVTAAKAALETAVFVPFAMGQERLSHVHCVLSGAGAPTQEPHWAGTRSSGDLSEDASVDGKDEPEPAAAQEDEVEVVEELVVLGLVKWNEEFLGDDGRLHFRLASSIQACPIRTSPYVALLQLAPERFGPHLSGFATVTAVACTPLLSSSTILDFMTCLGAEQAEEEGQNGSQTTAPPLLRGGYLRWPDSVPSRRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDAVCLSEGRVVMREVPSGAVLLGSVPAAGLGSPEEGAGNAAVTALDVWVERDHVAAAVPA-GRNACWVAVGLESGDARVIVLSNRMEAGSSSPDFPCGSGGSSKARSGGGTPLAEKPVEVSDVKLGDDGTTGDASAKGSSGGGRLLKRFLKRGAGQQPSLGDEEGAMEDTELEAAIAQARAEARAIVALEESREGAPGNAETAEPRGAAVDDARKRESVGGEGEAQETDDQGESDHLRQELSEAMADEGAWSGSVMPPSPKRPPTKHTPEAETGEEEKLPLDEPPKASLIQLALRLHSHAVRCVALSFDARGSALALVVADEAGVVSVTDVSTGSASLLPMRVPQSRPCRPSVTIGPMPSALSGGAAPKPGASGALFVLLEGWLNVFDLASRDPVDFVQVPGLAPPSDXXXXXXXXXXXXRAGIREDDFAGSAGRTRSRERGEETPWLACVDNRGLPLLPYASEPFSSSFSPPPREDDASTDADGGKIDPEDAPVHSHTIWVSPVPSRTALDDYHEHELQVLSDTPPPEPLLLVVRGATAVVLAISRRDADGVTSSVFARRGSVSPDAATFKGRSGAELVVRSRGTLPPAGRSAVPPTIDGVGVCMVAAAGGRGLEREAGRRGCLIAADSSGFVTAATMPNCEEARRRWRRSPCAISSGSSRSKGWQG 1334
[Close]
BLAST of mRNA_Ecto-sp13_S_contig124.1990.1 vs. uniprot
Match: A0A369K7R7_HYPMA (Uncharacterized protein C1F3.03 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369K7R7_HYPMA)

HSP 1 Score: 63.5 bits (153), Expect = 3.050e-6
Identity = 79/278 (28.42%), Postives = 114/278 (41.01%), Query Frame = 1 
Query:  223 LSYEPTNGLMAVASRGGLVKVFGGPGVELVLE-EEGASVAGEDPPSHLLFVTPSL-LVGVTATGAVLVWDLAAGGRGG---SIPFPPDPATGLDERVTSVHAHGGGDGGGPASDAHEERYVFLGFESGRVRVAQVFPVCRESGYTV-------EPQNTSHGAPDELLQAPGKSLGAVTAIASFGDRDGGGRGFGIFGHRCGGIVVWDWVRRKRLAFRSLGKSQGKKEEEEDGDYGEEDFEDREGREVTSLALHPSGEAFAAGFAAGCYAIFSVSSSPS 1020
            ++ EP +GL+AV + GG+V VFGGPGVE  L   E   V        L F T +  LV +     + +WDLA+ GR     S+ F  DP   L   ++  H+H                  FL   SG +R   +    R+S YT+       E +  + G P+    +P   +   T I              +F    GGI++ D   R  +    L    G         YG  D       EVT+LA+HP+G  FA G+  G  A ++V+   S
Sbjct:   40 MATEPISGLLAVGTAGGVVYVFGGPGVETRLPLPESVGV------KFLQFATSTFQLVCLDDRNMMHIWDLASYGRPKFVLSVRF--DPTNSLT--LSPSHSH-----------------AFLALNSGEIRTYDL-TCLRKSPYTMPNMWRLYEDKLFAGGIPNH--SSPDARISVDTVIHPRDLNQ-------LFVAYAGGIILSDLTERSTIRSYELVLPPGAPG---GFGYGSHDLLTHRKAEVTTLAIHPAGHFFAVGYTDGSIAFWAVNDDES 277
[Close]
BLAST of mRNA_Ecto-sp13_S_contig124.1990.1 vs. uniprot
Match: A0A662XNQ1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNQ1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.230e-6
Identity = 74/285 (25.96%), Postives = 120/285 (42.11%), Query Frame = 1 
Query:  187 LGHHGSISDACILSYEPTNGLMAVASRGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFVTPSLLVGVTATGAVLVWDLAAGGRGGSIPFPPDPATGLDERVTSVHAHGGGDGGGPASDAHEE-RYVFLGFESGRVRVAQVFPVCRESGYTVEPQNTSHGAPDELLQAPGKSLGAVTAIASFGDRDGGGRGFGIFGHRCGGIVVWDWVRRKRLA-FRSLGKSQ------------GKKEEEEDGDYGEEDFEDREGREVTSLALHPSGEAFAAGFAAGCYAIF 999
            + HHG  S+A  L++    GL+AV + GG +K++G  G+E++LE   AS +     +H+ F     LV      +V ++DL  G     +     PA+     +  +            + A+    + F+  + G + V       R S Y + PQ+ S      +  A G     VTA+AS   RD       I    C  +++WD+ +RK +  F   GK++            G    + DG++              SLA H SG+ F AGF  G +A+F
Sbjct:   36 VAHHGVPSNAKTLAFCGRQGLLAVGTAGGAIKLYGADGLEVLLEAPIASSSVAAGVTHMQFTAHQRLVAAYTDSSVRIFDLTTG-----VVLAEMPASWTTSVIVWLE-----------TIAYTNFPFFFVATDDGEIHVIHE-ETGRVSTYVIRPQDLS------VSNAEG-----VTALASH-PRD--SNQLLIAFDTCPAVLLWDFAKRKVIREFTLSGKARKAASPQASLSPPGSMSADADGNFS--------CNSPQSLAWHSSGKRFVAGFKQGGFAVF 281
[Close]
BLAST of mRNA_Ecto-sp13_S_contig124.1990.1 vs. uniprot
Match: A0A0L6WZ77_9AGAR (Lgl_C domain-containing protein n=1 Tax=Termitomyces sp. J132 TaxID=1306850 RepID=A0A0L6WZ77_9AGAR)

HSP 1 Score: 62.8 bits (151), Expect = 5.250e-6
Identity = 78/271 (28.78%), Postives = 114/271 (42.07%), Query Frame = 1 
Query:  232 EPTNGLMAVASRGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFVTPSL-LVGVTATGAVLVWDLAAGGRGGSIPFPPDPATGLDERVTSVHAHGGGDGGGPASDAHEERYVFLGFESGRVRVAQVFPVC-RESGYTVEPQNTSHGAPDELLQAPG-------KSLGAVTAIASFGDRDGGGRGFGIFGHRCGGIVVWDWVRRKRLAFRSL----GKSQGKKEEEEDGDYGEEDFEDREGREVTSLALHPSGEAFAAGFAAGCYAIFSV 1005
            EP +GL+A+ + GG++ +FGGPGVE  L      + G      L F   S  LV +  T  + +WDLAA GR   +      AT     ++  H+H                  FL   +G +R   +  VC R+S YT+      +    E L+A G       +S  +V  +A   D +       +F    GG+V+ D+  R  L    L    G   G         YG  D       EVT+L +HP+G  FA G+A G  A ++V
Sbjct:   43 EPISGLLAIGTAGGVIYLFGGPGVETRLVTP--DIVGV---KFLQFAPSSFQLVCLDDTSVLHIWDLAAIGRPKLVASARFDATN-SLTLSPCHSH-----------------AFLALNNGEIRTYDL--VCLRKSPYTMPNMWKLY---QEKLKASGVHCASSAESQTSVDTLAHPRDLN------QLFVAYAGGVVLTDFTERATLRAYELILPPGAPGG-------FGYGSHDLLTHRRPEVTALTIHPAGHFFAVGYADGSLAFWAV 272
[Close]
BLAST of mRNA_Ecto-sp13_S_contig124.1990.1 vs. uniprot
Match: A0A1Y1IKI2_KLENI (V-SNARE coiled-coil homology domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKI2_KLENI)

HSP 1 Score: 59.3 bits (142), Expect = 6.180e-5
Identity = 88/357 (24.65%), Postives = 143/357 (40.06%), Query Frame = 1 
Query:  148 AADVMGSFASPKRLGHHGSISDACILSYEPTNGLMAVASRGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFVT-PSLLVGVTATGAVLVWDLAAGGRGGSIPFPPDPATGLDERVTSVHAHGGGDGGGPASDAHEERYVFLGFESGRVRVAQVFP-VCRESGYTVEPQNTSHGAPDELLQAPGKSLGAVTAIASFGDRDGGGRGFGIFG-----HRCGGIVVWDWVRRKRLAFRSLGKSQGKK----EEEEDGDYGEEDFEDREGREVTSLALHPSGEAF-AAGFAAGCYAIFSVSSSPSHEIGPPRWVREVGDDGSCPREGPTIVRTAVSLVRWVRVRAAGAGRTSGLVVAGG 1182
            A  +  S   P+   H G  + A +L+YEP   L+AV S  G +K+FGG G+E +L+        + P   L FV     L+ VT T  + VWDL       S  +        D  V ++    G +            Y+++G +SG VR+ ++   + +   Y + P  T  G    L+ A  ++  +V AI    D         IFG     +  G +V+W     + LA R   + Q  +    E     D G+ED ++  G ++  +    +G A  AAG+  G    ++  S  +  +      +   +     R      R  V+ +RW    +   GR   L V GG
Sbjct:   19 AGTLQPSDLQPRLSVHSGIPAQAQLLAYEPVQRLLAVGSSDGRIKIFGGDGIEGLLQS-----LTKAPTLFLQFVNNKGRLIHVTTTNQIEVWDLEERKLVASCTW--------DTEVAAIAQVSGAN------------YIYVGDDSGVVRILELRKELLQPLPYCIPPHVTLAG----LVSADSETPPSVVAILPQPDA--------IFGRLLIAYSNGILVLWALHEGRVLALRGCIEQQKARLLSFEGRPSQDGGDEDEDEETGEQLRCVTWADAGGALLAAGYDNGDIKFWTFPSGKTGSVSEAEGFKIETEPVRLVRLARGSSRAPVTALRWSGASSRDGGR---LYVLGG 335
[Close]
BLAST of mRNA_Ecto-sp13_S_contig124.1990.1 vs. uniprot
Match: G5A3F2_PHYSP (V-SNARE coiled-coil homology domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A3F2_PHYSP)

HSP 1 Score: 59.3 bits (142), Expect = 6.270e-5
Identity = 76/277 (27.44%), Postives = 119/277 (42.96%), Query Frame = 1 
Query:  193 HHGSISDACILSYEPTNGLMAVASRGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFVTPSLLVGVTATGAVLVWDLAAGGRGGSIPFPPDPATGLDERVTSVHAHGGGDGGGPASDAHEERYVFLGFESGRVRVAQVFPVCRESGYTVEPQNTSHGAPDELLQAPGKSLGAVTAIASFGDRDGGGRGFGIFGHRCGGIVVWDWVRRKRLA-FRSLGKSQGKKEEEEDGDYGEEDFEDRE--GREVTSLALHPSGEAFAAGFAAGCYAIFSVSSS 1014
            HHG  S+A  L++    GL+AV +  G VK++GG G+E++L+   ++        HL F     LV      ++ V+DLA  G    +   PD  T     +T++            S A+   + F+  + G V V Q     R S Y + PQ+ S      +  A G     VTA+AS   RD       +    C  +++WD+ +RK +  F   GK+      +      E   +  E       SL+ H SG+ F AG+  G +A+F    S
Sbjct:   38 HHGVPSNARALAFCGLQGLLAVGTAAGAVKLYGGEGLEVLLDAPESASHLAVGVMHLRFTARQRLVVGYTDSSLRVFDLAVAGGPTLLSCVPDSWT--SSAITNLET---------ISYANFP-FFFVATDDGDVHVVQE-ETGRVSTYVIRPQDLS------VPNAEG-----VTAMASH-PRD--SNLLLLAYDTCPAVLLWDFAKRKVVREFTLSGKAHKLSSPQSSLAPSESSADSGELVCNSPQSLSWHGSGKRFVAGYKHGGFAVFRTEKS 287
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig124.1990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LBN4_ECTSI0.000e+091.56V-SNARE coiled-coil homology domain-containing pro... [more]
A0A6H5K0L8_9PHAE0.000e+087.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A369K7R7_HYPMA3.050e-628.42Uncharacterized protein C1F3.03 n=1 Tax=Hypsizygus... [more]
A0A662XNQ1_9STRA3.230e-625.96Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A0L6WZ77_9AGAR5.250e-628.78Lgl_C domain-containing protein n=1 Tax=Termitomyc... [more]
A0A1Y1IKI2_KLENI6.180e-524.65V-SNARE coiled-coil homology domain-containing pro... [more]
G5A3F2_PHYSP6.270e-527.44V-SNARE coiled-coil homology domain-containing pro... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig124contigEcto-sp13_S_contig124:21858..26798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score61.2
Seed ortholog evalue4.1e-06
Seed eggNOG ortholog4787.PITG_17965T0
Preferred nameSTXBP5
Model size3924
KEGG koko:K06094,ko:K08518,ko:K08519,ko:K08775
KEGG Pathwayko03440,ko03460,ko04390,ko04391,ko04530,ko05165,ko05200,ko05212,ko05224,map03440,map03460,map04390,map04391,map04530,map05165,map05200,map05212,map05224
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000132,GO:0000137,GO:0000139,GO:0000145,GO:0000149,GO:0000226,GO:0000278,GO:0000578,GO:0000902,GO:0000904,GO:0001505,GO:0001568,GO:0001700,GO:0001701,GO:0001709,GO:0001738,GO:0001763,GO:0001890,GO:0001892,GO:0001932,GO:0001933,GO:0001944,GO:0002009,GO:0002164,GO:0002165,GO:0002168,GO:0002791,GO:0002792,GO:0002793,GO:0003002,GO:0003006,GO:0003008,GO:0003674,GO:0004857,GO:0004860,GO:0005096,GO:0005198,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005795,GO:0005802,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0005892,GO:0005911,GO:0005918,GO:0005920,GO:0005933,GO:0005935,GO:0005937,GO:0005938,GO:0006469,GO:0006810,GO:0006836,GO:0006887,GO:0006892,GO:0006893,GO:0006996,GO:0007010,GO:0007017,GO:0007043,GO:0007044,GO:0007049,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007264,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007350,GO:0007351,GO:0007389,GO:0007391,GO:0007399,GO:0007405,GO:0007406,GO:0007409,GO:0007417,GO:0007420,GO:0007423,GO:0007431,GO:0007435,GO:0007444,GO:0007552,GO:0007560,GO:0007591,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0008021,GO:0008047,GO:0008092,GO:0008104,GO:0008150,GO:0008219,GO:0008283,GO:0008285,GO:0008289,GO:0008356,GO:0008358,GO:0008360,GO:0008363,GO:0008544,GO:0008593,GO:0008595,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009791,GO:0009792,GO:0009798,GO:0009880,GO:0009886,GO:0009887,GO:0009888,GO:0009892,GO:0009948,GO:0009952,GO:0009966,GO:0009968,GO:0009987,GO:0009994,GO:0010008,GO:0010033,GO:0010563,GO:0010605,GO:0010623,GO:0010646,GO:0010648,GO:0010717,GO:0010719,GO:0010721,GO:0010817,GO:0010941,GO:0010942,GO:0012501,GO:0012502,GO:0012505,GO:0014070,GO:0015629,GO:0016020,GO:0016021,GO:0016043,GO:0016079,GO:0016082,GO:0016192,GO:0016323,GO:0016325,GO:0016327,GO:0016331,GO:0016332,GO:0016333,GO:0016334,GO:0016335,GO:0016336,GO:0017016,GO:0017022,GO:0017048,GO:0017049,GO:0017075,GO:0017137,GO:0017145,GO:0017156,GO:0017157,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019905,GO:0019953,GO:0019991,GO:0021700,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022612,GO:0023051,GO:0023052,GO:0023057,GO:0023061,GO:0030010,GO:0030011,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030054,GO:0030133,GO:0030141,GO:0030154,GO:0030165,GO:0030182,GO:0030234,GO:0030334,GO:0030336,GO:0030427,GO:0030695,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030951,GO:0030952,GO:0031012,GO:0031090,GO:0031175,GO:0031201,GO:0031224,GO:0031226,GO:0031267,GO:0031323,GO:0031324,GO:0031338,GO:0031399,GO:0031400,GO:0031410,GO:0031503,GO:0031581,GO:0031594,GO:0031901,GO:0031982,GO:0031984,GO:0031985,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032588,GO:0032878,GO:0032879,GO:0032880,GO:0032940,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033500,GO:0033673,GO:0033993,GO:0034329,GO:0034330,GO:0034613,GO:0034622,GO:0034629,GO:0034702,GO:0035017,GO:0035070,GO:0035071,GO:0035072,GO:0035075,GO:0035078,GO:0035081,GO:0035088,GO:0035090,GO:0035091,GO:0035212,GO:0035239,GO:0035264,GO:0035272,GO:0035282,GO:0035293,GO:0035295,GO:0035542,GO:0035556,GO:0035748,GO:0036314,GO:0036445,GO:0040001,GO:0040003,GO:0040007,GO:0040008,GO:0040012,GO:0040013,GO:0042127,GO:0042221,GO:0042303,GO:0042325,GO:0042326,GO:0042335,GO:0042337,GO:0042592,GO:0042593,GO:0042995,GO:0043009,GO:0043067,GO:0043068,GO:0043085,GO:0043086,GO:0043087,GO:0043167,GO:0043168,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043235,GO:0043254,GO:0043296,GO:0043297,GO:0043332,GO:0043547,GO:0043549,GO:0043588,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044093,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044458,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045055,GO:0045159,GO:0045165,GO:0045167,GO:0045175,GO:0045176,GO:0045184,GO:0045196,GO:0045197,GO:0045200,GO:0045202,GO:0045216,GO:0045595,GO:0045596,GO:0045682,GO:0045746,GO:0045859,GO:0045920,GO:0045921,GO:0045936,GO:0046676,GO:0046883,GO:0046888,GO:0046903,GO:0046907,GO:0048102,GO:0048103,GO:0048193,GO:0048468,GO:0048469,GO:0048477,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048568,GO:0048569,GO:0048583,GO:0048585,GO:0048589,GO:0048598,GO:0048599,GO:0048608,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048730,GO:0048731,GO:0048732,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0048880,GO:0048881,GO:0048882,GO:0048884,GO:0048915,GO:0048916,GO:0048919,GO:0048925,GO:0050678,GO:0050680,GO:0050708,GO:0050709,GO:0050714,GO:0050767,GO:0050768,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050796,GO:0050804,GO:0050877,GO:0050890,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051048,GO:0051049,GO:0051050,GO:0051051,GO:0051093,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051224,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051270,GO:0051271,GO:0051286,GO:0051293,GO:0051294,GO:0051301,GO:0051336,GO:0051338,GO:0051345,GO:0051348,GO:0051601,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051653,GO:0051656,GO:0051668,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0055057,GO:0055059,GO:0060033,GO:0060255,GO:0060271,GO:0060284,GO:0060322,GO:0060429,GO:0060562,GO:0060589,GO:0060627,GO:0060669,GO:0060670,GO:0060674,GO:0060711,GO:0060713,GO:0060716,GO:0061138,GO:0061245,GO:0061351,GO:0061458,GO:0061564,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070121,GO:0070160,GO:0070201,GO:0070382,GO:0070727,GO:0070848,GO:0070887,GO:0070925,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072358,GO:0072359,GO:0072697,GO:0080090,GO:0090087,GO:0090162,GO:0090163,GO:0090276,GO:0090278,GO:0097305,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098590,GO:0098722,GO:0098725,GO:0098772,GO:0098773,GO:0098791,GO:0098793,GO:0098796,GO:0098797,GO:0098802,GO:0098805,GO:0098876,GO:0098916,GO:0099003,GO:0099023,GO:0099177,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0120039,GO:0140029,GO:1900073,GO:1901654,GO:1901700,GO:1901981,GO:1902074,GO:1902075,GO:1902495,GO:1902692,GO:1902850,GO:1902936,GO:1903047,GO:1903530,GO:1903531,GO:1903532,GO:1904950,GO:1904951,GO:1990351,GO:1990778,GO:2000026,GO:2000145,GO:2000146,GO:2000177,GO:2000178,GO:2000647
Exons4
EggNOG free text desc.WD40 repeats
EggNOG OGs3Q7EU@4776,KOG1983@1,KOG1983@2759
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-27_003330.1
Cds size3924
COG Functional cat.U
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko03400,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462659.8080206-CDS-Ecto-sp13_S_contig124:21857..219581681462659.8080206-CDS-Ecto-sp13_S_contig124:21857..21958Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig124 21858..21958 -
1681462659.822088-CDS-Ecto-sp13_S_contig124:22067..256471681462659.822088-CDS-Ecto-sp13_S_contig124:22067..25647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig124 22068..25647 -
1681462659.831921-CDS-Ecto-sp13_S_contig124:26047..262121681462659.831921-CDS-Ecto-sp13_S_contig124:26047..26212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig124 26048..26212 -
1681462659.8453207-CDS-Ecto-sp13_S_contig124:26720..267981681462659.8453207-CDS-Ecto-sp13_S_contig124:26720..26798Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig124 26721..26798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig124.1990.1prot_Ecto-sp13_S_contig124.1990.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig124 21858..26798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig124.1990.1

>prot_Ecto-sp13_S_contig124.1990.1 ID=prot_Ecto-sp13_S_contig124.1990.1|Name=mRNA_Ecto-sp13_S_contig124.1990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1308bp
TGRSACGALLSVGVSQAAAMRSFLSQVGLKSSAGEEQWERPANDGPDADA
ADVMGSFASPKRLGHHGSISDACILSYEPTNGLMAVASRGGLVKVFGGPG
VELVLEEEGASVAGEDPPSHLLFVTPSLLVGVTATGAVLVWDLAAGGRGG
SIPFPPDPATGLDERVTSVHAHGGGDGGGPASDAHEERYVFLGFESGRVR
VAQVFPVCRESGYTVEPQNTSHGAPDELLQAPGKSLGAVTAIASFGDRDG
GGRGFGIFGHRCGGIVVWDWVRRKRLAFRSLGKSQGKKEEEEDGDYGEED
FEDREGREVTSLALHPSGEAFAAGFAAGCYAIFSVSSSPSHEIGPPRWVR
EVGDDGSCPREGPTIVRTAVSLVRWVRVRAAGAGRTSGLVVAGGVEIEEG
EDPDGVSLLVPSSEAVGARGGGGSGGRAVKKKDVVTAAKAALETAVFVPF
AMGQERLSHVHCVLSDAGAPTREPHRAGTRSSGDLSLDARVGVKDEPESA
AAHEDEVEVAEELVVLGLVKWKEEFLGDDGRLHFRLASSIQACPIQTSPY
VALLQLAPERFGPHLSGFATVTAVACTPLLSSSTILDFMTCLGAEEAEEE
GRNGSQTTAPPLLRGGYLRWPDSVPSRRRDEALGTSELLVAGHSDGSLSF
WECCGPASRQDAVCLSEGRVVMREVPSGAVLLGSVPAAGLGSPEEGAGNV
AVTALDVWVERDHVAAAAAAAGRNACWVAVGLESGDARVIVLSSRMEAGS
SSPDFPSGSGGGSKAGSGGGTPLAEKPVEVSDVKLGDDRTTEDASAKGGS
SGGRLLKRFLKRGAGQQPSPGDEEGAMEDTELEAAIAEARAEARAIAALE
ESREGAPGNAGTVGPRGTAVDDARKRESVGGEGKAQETDNQEESDHLRQE
LSEAMADEGAWSGSVVPPLPKRPPTKHTPEADKGEEEKLRLDEPPKASLI
QLALRLHSHAVRCVALSFDARGSALSLVVADEAGVVSVTDVSTGSASLLP
MRVPQSRPCRPSVTIGPMPSALSGGQAPEPGTSGALFVLLEGWLNVFDLA
SRDPVDFVQVPGLAPPIDEGHTSGGGGGRAGVREDDFTGSAGRTRSRERS
EETPWLACVDKRGLPLLPYASEPFSSSFSPPPRKDDAGTEADGGKIDPED
APVHSHTIWVSPVPSRTALDDYHEHELQVLSDTPPPEPLLLVVRGATAIV
LAISRGDANGVTSSVFARRGSVSPDTATFKGRSGAELVVQSRGTLPPAGR
SAVPPTIDGAGVCMVAAAGREGLEAATMPDCEEARRRWRRSPCAISSGSS
RSKGWQG*
back to top

mRNA from alignment at Ecto-sp13_S_contig124:21858..26798-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig124.1990.1 ID=mRNA_Ecto-sp13_S_contig124.1990.1|Name=mRNA_Ecto-sp13_S_contig124.1990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4941bp|location=Sequence derived from alignment at Ecto-sp13_S_contig124:21858..26798- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGGCAGATCGGCTTGCGGCGCTCTCTTGTCGGTGGGCGTTTCCCAGGC
AGCAGCCATGCGGAGCTTTCTTAGCCAGGTGAAGCAGAGTGTCCGATACC
ACCAGCTACACAGGCTGGAACACGGTCAAATTAGTCTCGGGTCGTATCCT
GTGTACACTATGATGTACCTGGCCCAGCACCAGAACACTGCAGTCGGTGG
AGCTTTTCTGCTTGGTATACTTCCTGGTAGTGCACGTCCGTGTGGTAAGT
GATGGTGTTATTCCCTAGCGTCCGTTCCGCATAAAGCATGAACAAATGTA
GTTCAATGCACGGCGTTTTCGCACGAACGACGATCGGTTGTATACCGCAG
CGTCGCCATGTTCCGACAAAGAGACGCCTCGTGCCAAGAACGTTGAATCT
GGAAGAACGCGCCCATTCATCCGAGATGCGACGACTACCTGCAAGTGCTG
CGCGCAATTGGCTGTCGCCGTTTTGCTTAGTTCGACATACGCGCGCACGT
GGGCTGAAAACGTTCGTGTTCATATGTAGAGGTCGCCGACGCCCGGCATG
TCGTGAAGGGAATCATGAACCTCTGTTTTCGGGCAGGTCGGCCTCAAGAG
CAGCGCCGGCGAGGAGCAATGGGAAAGGCCCGCAAACGACGGTCCGGACG
CAGACGCTGCCGATGTGATGGGGTCCTTCGCCTCCCCGAAGCGGCTGGGC
CATCATGGTTCTATCAGCGACGCTTGTATCTTGTCCTACGAACCAACCAA
CGTGAGTCTCCTCCCTTGTCCGAGGAACCCCGCGTATGTCACGTGACAGG
AAATGCAGTTCATGTGTAACGGTCCTCGCTTGGCAACACGCTGCGACGCC
AACACAAGAGCGGCGTCTTGCAAGAACATGGACTGGTGTCGAAGCGCTCA
ATCGTACAGCAAAATTTGCATCGTGTAACCATTTGCACTTCGTGTTTCTA
CAGCAGGGACTTTTTGGGAGCACCCTTTGCTTTGGGTTCCCCCTGGTCGT
CATTCGAACAAGGCGTAGGGCTCGAAGGTTTCACCAATACGTAACCAGCT
GGAGTACACGATAGCCGTCCTACAGCATGTAACGGGGAAGACCTTCCATG
CATTCTTGCTGCCGATCGAAACTGCTGCCGTTGTTTCGCACGCGCCCCCA
GGGACTGATGGCCGTCGCCTCCCGGGGGGGTCTAGTCAAAGTGTTCGGCG
GGCCGGGGGTGGAGCTGGTTCTCGAGGAAGAGGGGGCATCCGTCGCCGGC
GAGGACCCACCGTCTCACCTGCTCTTCGTGACGCCGAGCCTTCTCGTGGG
GGTGACAGCAACGGGTGCCGTGTTGGTGTGGGACCTCGCGGCAGGAGGCC
GCGGCGGTAGCATCCCCTTCCCGCCGGACCCCGCCACGGGCCTCGACGAG
CGCGTCACGTCCGTTCACGCGCACGGCGGCGGCGACGGCGGCGGCCCTGC
CTCCGACGCTCACGAGGAGCGGTACGTCTTCCTGGGCTTCGAGAGCGGTC
GCGTTCGCGTCGCGCAAGTTTTCCCTGTGTGTCGCGAGTCCGGCTACACC
GTGGAGCCTCAGAACACGAGCCACGGAGCACCTGATGAGCTGCTGCAAGC
GCCCGGCAAGAGTCTCGGGGCCGTCACCGCCATCGCATCTTTCGGAGATC
GGGACGGCGGCGGCCGCGGGTTTGGCATTTTTGGACACCGGTGCGGCGGA
ATCGTGGTCTGGGATTGGGTCCGCCGGAAGCGACTCGCGTTCCGGAGCCT
GGGCAAGTCGCAAGGCAAGAAGGAGGAGGAGGAGGACGGCGACTACGGGG
AGGAGGACTTCGAGGACCGGGAGGGTCGCGAGGTGACGAGCCTGGCGTTG
CACCCTTCCGGCGAGGCGTTCGCGGCCGGGTTCGCAGCCGGCTGCTACGC
GATCTTCTCCGTCTCCTCGTCGCCTTCGCACGAGATCGGCCCGCCGCGGT
GGGTGCGCGAGGTCGGGGACGACGGCTCGTGCCCGAGGGAAGGACCGACC
ATCGTGCGAACGGCGGTCTCCCTGGTGCGGTGGGTGCGCGTGCGCGCGGC
CGGGGCCGGCAGGACGTCGGGGCTTGTCGTGGCGGGCGGCGTCGAGATCG
AAGAGGGCGAGGACCCCGACGGGGTAAGCCTGCTGGTGCCGTCATCTGAG
GCTGTTGGCGCGCGCGGCGGCGGCGGCAGCGGTGGGAGGGCCGTAAAGAA
GAAAGACGTTGTCACGGCGGCGAAGGCCGCGCTCGAGACCGCTGTTTTCG
TGCCCTTCGCTATGGGACAAGAGAGGCTGTCCCACGTACATTGTGTGCTC
TCGGATGCAGGGGCGCCGACACGAGAACCTCATAGGGCAGGAACAAGGTC
TTCCGGCGACCTGTCTTTGGACGCGAGGGTCGGCGTCAAGGATGAGCCGG
AATCAGCAGCGGCGCACGAGGACGAGGTCGAGGTAGCCGAGGAGCTGGTC
GTCCTCGGGCTGGTGAAGTGGAAGGAGGAGTTTCTAGGCGACGACGGAAG
GCTGCACTTTAGGCTCGCTTCGTCCATCCAGGCCTGCCCGATCCAGACGA
GCCCCTACGTGGCTCTGCTGCAGCTGGCGCCGGAGAGGTTCGGACCGCAC
CTCTCGGGGTTTGCGACGGTCACGGCGGTCGCGTGCACTCCGCTCCTATC
CTCGTCCACGATACTCGACTTCATGACGTGCTTGGGGGCCGAAGAGGCGG
AGGAGGAGGGTCGAAATGGCTCGCAGACCACGGCGCCCCCCCTCCTGCGA
GGCGGTTACCTCCGATGGCCCGACAGCGTCCCTTCGCGCAGGCGCGACGA
AGCCCTGGGCACCAGCGAGCTCCTCGTCGCGGGCCACTCGGACGGGTCGC
TCAGCTTCTGGGAGTGCTGCGGGCCGGCGTCGAGGCAGGACGCGGTCTGC
CTCTCGGAGGGCAGGGTGGTCATGCGCGAGGTCCCCTCGGGGGCCGTCCT
GCTGGGCTCCGTGCCGGCTGCCGGTTTGGGGTCCCCCGAAGAGGGCGCGG
GAAACGTCGCCGTGACTGCGCTCGACGTGTGGGTTGAGCGCGACCACGTC
GCGGCGGCGGCGGCGGCGGCGGGGCGCAACGCTTGCTGGGTGGCGGTCGG
CCTCGAGAGCGGGGACGCCAGGGTGATCGTTTTGTCCAGCAGGATGGAAG
CCGGGAGCAGCAGCCCAGATTTTCCTAGCGGTAGCGGCGGTGGCAGTAAG
GCAGGGTCGGGGGGGGGCACGCCGCTGGCAGAGAAACCCGTAGAGGTTTC
TGACGTGAAGCTGGGCGACGACCGAACGACCGAAGATGCTTCGGCGAAAG
GCGGTAGCAGCGGCGGTCGACTGTTGAAACGGTTCTTGAAGCGCGGAGCG
GGGCAGCAGCCGTCTCCCGGGGACGAGGAGGGCGCAATGGAAGATACCGA
GCTGGAAGCGGCTATCGCGGAGGCACGGGCAGAAGCGCGCGCGATTGCGG
CGCTCGAGGAGTCGAGGGAAGGGGCTCCCGGGAATGCTGGAACGGTAGGA
CCTCGAGGGACGGCGGTTGACGATGCGCGAAAACGCGAATCCGTTGGGGG
GGAAGGGAAGGCGCAGGAGACCGACAATCAAGAAGAGAGCGATCATCTTC
GGCAAGAGCTTTCAGAGGCCATGGCCGACGAGGGCGCGTGGAGCGGATCC
GTCGTGCCACCTTTGCCCAAACGACCGCCTACGAAGCACACCCCGGAGGC
AGACAAAGGAGAAGAAGAGAAGCTCCGCTTGGACGAACCCCCGAAGGCTT
CTCTGATACAGCTCGCGCTCAGGCTGCACAGCCACGCGGTTCGGTGCGTC
GCCCTGTCGTTCGACGCGCGGGGGTCGGCCCTGTCTCTCGTCGTAGCGGA
CGAGGCCGGCGTCGTCTCCGTGACGGATGTCTCCACCGGCTCCGCCTCGC
TTCTGCCCATGCGCGTCCCGCAGTCCAGACCCTGCCGTCCGAGCGTCACG
ATCGGCCCTATGCCGAGTGCCCTTTCGGGGGGGCAAGCCCCAGAACCCGG
CACCTCCGGGGCACTGTTTGTCTTGCTGGAGGGATGGCTCAACGTCTTCG
ACCTTGCATCCAGGGACCCCGTCGATTTTGTTCAGGTACCTGGGCTTGCG
CCCCCAATTGACGAAGGCCATACTAGCGGCGGCGGCGGCGGCAGAGCCGG
TGTTCGGGAAGATGATTTCACCGGGTCCGCAGGGAGAACAAGGAGTCGCG
AGCGGAGCGAAGAAACCCCCTGGCTTGCCTGCGTGGACAAGCGCGGCCTG
CCGCTCCTGCCGTACGCGTCGGAACCGTTCAGCTCTTCCTTTAGCCCCCC
GCCACGAAAGGATGATGCCGGCACGGAAGCCGACGGCGGGAAGATTGACC
CAGAAGATGCCCCCGTCCACTCGCACACCATCTGGGTCTCTCCCGTGCCC
TCGCGCACCGCGCTCGACGACTACCACGAGCACGAGCTGCAGGTTCTCAG
CGACACACCGCCGCCAGAACCGTTGTTATTGGTAGTGCGCGGGGCGACAG
CAATCGTCCTTGCTATCTCCCGGGGGGACGCCAACGGCGTTACATCATCA
GTGTTTGCCCGGCGGGGCTCGGTCTCTCCCGACACGGCGACTTTCAAGGG
AAGGTCGGGCGCCGAGCTGGTTGTGCAGTCTCGGGGGACGTTGCCGCCGG
CCGGGAGAAGCGCGGTGCCGCCGACGATCGACGGCGCCGGTGTCTGCATG
GTGGCGGCGGCGGGGAGGGAAGGGCTAGAAGGTGAGGCGGGGCGACGCGG
GTGCCTCATCGCTGCCGACTCCTCTGGTTTCGTGACGGGTCTCCTCCTTC
CTTCCCTCTGTCCTGTCTTTCGCGACCGGCTTCCTACGAGCGGCGACGAT
GCCGGATTGCGAAGAGGCGCGCCGTCGCTGGCGCAGAAGTCCGTGTGCAA
TTTCGTCGGGGAGCTCACGCTCCAAGGGATGGCAGGGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig124:21858..26798-

>mRNA_Ecto-sp13_S_contig124.1990.1 ID=mRNA_Ecto-sp13_S_contig124.1990.1|Name=mRNA_Ecto-sp13_S_contig124.1990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig124:21858..26798- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGGCAGATCGGCTTGCGGCGCTCTCTTGTCGGTGGGCGTTTCCCAGGC
AGCAGCCATGCGGAGCTTTCTTAGCCAGGTCGGCCTCAAGAGCAGCGCCG
GCGAGGAGCAATGGGAAAGGCCCGCAAACGACGGTCCGGACGCAGACGCT
GCCGATGTGATGGGGTCCTTCGCCTCCCCGAAGCGGCTGGGCCATCATGG
TTCTATCAGCGACGCTTGTATCTTGTCCTACGAACCAACCAACGGACTGA
TGGCCGTCGCCTCCCGGGGGGGTCTAGTCAAAGTGTTCGGCGGGCCGGGG
GTGGAGCTGGTTCTCGAGGAAGAGGGGGCATCCGTCGCCGGCGAGGACCC
ACCGTCTCACCTGCTCTTCGTGACGCCGAGCCTTCTCGTGGGGGTGACAG
CAACGGGTGCCGTGTTGGTGTGGGACCTCGCGGCAGGAGGCCGCGGCGGT
AGCATCCCCTTCCCGCCGGACCCCGCCACGGGCCTCGACGAGCGCGTCAC
GTCCGTTCACGCGCACGGCGGCGGCGACGGCGGCGGCCCTGCCTCCGACG
CTCACGAGGAGCGGTACGTCTTCCTGGGCTTCGAGAGCGGTCGCGTTCGC
GTCGCGCAAGTTTTCCCTGTGTGTCGCGAGTCCGGCTACACCGTGGAGCC
TCAGAACACGAGCCACGGAGCACCTGATGAGCTGCTGCAAGCGCCCGGCA
AGAGTCTCGGGGCCGTCACCGCCATCGCATCTTTCGGAGATCGGGACGGC
GGCGGCCGCGGGTTTGGCATTTTTGGACACCGGTGCGGCGGAATCGTGGT
CTGGGATTGGGTCCGCCGGAAGCGACTCGCGTTCCGGAGCCTGGGCAAGT
CGCAAGGCAAGAAGGAGGAGGAGGAGGACGGCGACTACGGGGAGGAGGAC
TTCGAGGACCGGGAGGGTCGCGAGGTGACGAGCCTGGCGTTGCACCCTTC
CGGCGAGGCGTTCGCGGCCGGGTTCGCAGCCGGCTGCTACGCGATCTTCT
CCGTCTCCTCGTCGCCTTCGCACGAGATCGGCCCGCCGCGGTGGGTGCGC
GAGGTCGGGGACGACGGCTCGTGCCCGAGGGAAGGACCGACCATCGTGCG
AACGGCGGTCTCCCTGGTGCGGTGGGTGCGCGTGCGCGCGGCCGGGGCCG
GCAGGACGTCGGGGCTTGTCGTGGCGGGCGGCGTCGAGATCGAAGAGGGC
GAGGACCCCGACGGGGTAAGCCTGCTGGTGCCGTCATCTGAGGCTGTTGG
CGCGCGCGGCGGCGGCGGCAGCGGTGGGAGGGCCGTAAAGAAGAAAGACG
TTGTCACGGCGGCGAAGGCCGCGCTCGAGACCGCTGTTTTCGTGCCCTTC
GCTATGGGACAAGAGAGGCTGTCCCACGTACATTGTGTGCTCTCGGATGC
AGGGGCGCCGACACGAGAACCTCATAGGGCAGGAACAAGGTCTTCCGGCG
ACCTGTCTTTGGACGCGAGGGTCGGCGTCAAGGATGAGCCGGAATCAGCA
GCGGCGCACGAGGACGAGGTCGAGGTAGCCGAGGAGCTGGTCGTCCTCGG
GCTGGTGAAGTGGAAGGAGGAGTTTCTAGGCGACGACGGAAGGCTGCACT
TTAGGCTCGCTTCGTCCATCCAGGCCTGCCCGATCCAGACGAGCCCCTAC
GTGGCTCTGCTGCAGCTGGCGCCGGAGAGGTTCGGACCGCACCTCTCGGG
GTTTGCGACGGTCACGGCGGTCGCGTGCACTCCGCTCCTATCCTCGTCCA
CGATACTCGACTTCATGACGTGCTTGGGGGCCGAAGAGGCGGAGGAGGAG
GGTCGAAATGGCTCGCAGACCACGGCGCCCCCCCTCCTGCGAGGCGGTTA
CCTCCGATGGCCCGACAGCGTCCCTTCGCGCAGGCGCGACGAAGCCCTGG
GCACCAGCGAGCTCCTCGTCGCGGGCCACTCGGACGGGTCGCTCAGCTTC
TGGGAGTGCTGCGGGCCGGCGTCGAGGCAGGACGCGGTCTGCCTCTCGGA
GGGCAGGGTGGTCATGCGCGAGGTCCCCTCGGGGGCCGTCCTGCTGGGCT
CCGTGCCGGCTGCCGGTTTGGGGTCCCCCGAAGAGGGCGCGGGAAACGTC
GCCGTGACTGCGCTCGACGTGTGGGTTGAGCGCGACCACGTCGCGGCGGC
GGCGGCGGCGGCGGGGCGCAACGCTTGCTGGGTGGCGGTCGGCCTCGAGA
GCGGGGACGCCAGGGTGATCGTTTTGTCCAGCAGGATGGAAGCCGGGAGC
AGCAGCCCAGATTTTCCTAGCGGTAGCGGCGGTGGCAGTAAGGCAGGGTC
GGGGGGGGGCACGCCGCTGGCAGAGAAACCCGTAGAGGTTTCTGACGTGA
AGCTGGGCGACGACCGAACGACCGAAGATGCTTCGGCGAAAGGCGGTAGC
AGCGGCGGTCGACTGTTGAAACGGTTCTTGAAGCGCGGAGCGGGGCAGCA
GCCGTCTCCCGGGGACGAGGAGGGCGCAATGGAAGATACCGAGCTGGAAG
CGGCTATCGCGGAGGCACGGGCAGAAGCGCGCGCGATTGCGGCGCTCGAG
GAGTCGAGGGAAGGGGCTCCCGGGAATGCTGGAACGGTAGGACCTCGAGG
GACGGCGGTTGACGATGCGCGAAAACGCGAATCCGTTGGGGGGGAAGGGA
AGGCGCAGGAGACCGACAATCAAGAAGAGAGCGATCATCTTCGGCAAGAG
CTTTCAGAGGCCATGGCCGACGAGGGCGCGTGGAGCGGATCCGTCGTGCC
ACCTTTGCCCAAACGACCGCCTACGAAGCACACCCCGGAGGCAGACAAAG
GAGAAGAAGAGAAGCTCCGCTTGGACGAACCCCCGAAGGCTTCTCTGATA
CAGCTCGCGCTCAGGCTGCACAGCCACGCGGTTCGGTGCGTCGCCCTGTC
GTTCGACGCGCGGGGGTCGGCCCTGTCTCTCGTCGTAGCGGACGAGGCCG
GCGTCGTCTCCGTGACGGATGTCTCCACCGGCTCCGCCTCGCTTCTGCCC
ATGCGCGTCCCGCAGTCCAGACCCTGCCGTCCGAGCGTCACGATCGGCCC
TATGCCGAGTGCCCTTTCGGGGGGGCAAGCCCCAGAACCCGGCACCTCCG
GGGCACTGTTTGTCTTGCTGGAGGGATGGCTCAACGTCTTCGACCTTGCA
TCCAGGGACCCCGTCGATTTTGTTCAGGTACCTGGGCTTGCGCCCCCAAT
TGACGAAGGCCATACTAGCGGCGGCGGCGGCGGCAGAGCCGGTGTTCGGG
AAGATGATTTCACCGGGTCCGCAGGGAGAACAAGGAGTCGCGAGCGGAGC
GAAGAAACCCCCTGGCTTGCCTGCGTGGACAAGCGCGGCCTGCCGCTCCT
GCCGTACGCGTCGGAACCGTTCAGCTCTTCCTTTAGCCCCCCGCCACGAA
AGGATGATGCCGGCACGGAAGCCGACGGCGGGAAGATTGACCCAGAAGAT
GCCCCCGTCCACTCGCACACCATCTGGGTCTCTCCCGTGCCCTCGCGCAC
CGCGCTCGACGACTACCACGAGCACGAGCTGCAGGTTCTCAGCGACACAC
CGCCGCCAGAACCGTTGTTATTGGTAGTGCGCGGGGCGACAGCAATCGTC
CTTGCTATCTCCCGGGGGGACGCCAACGGCGTTACATCATCAGTGTTTGC
CCGGCGGGGCTCGGTCTCTCCCGACACGGCGACTTTCAAGGGAAGGTCGG
GCGCCGAGCTGGTTGTGCAGTCTCGGGGGACGTTGCCGCCGGCCGGGAGA
AGCGCGGTGCCGCCGACGATCGACGGCGCCGGTGTCTGCATGGTGGCGGC
GGCGGGGAGGGAAGGGCTAGAAGCGGCGACGATGCCGGATTGCGAAGAGG
CGCGCCGTCGCTGGCGCAGAAGTCCGTGTGCAATTTCGTCGGGGAGCTCA
CGCTCCAAGGGATGGCAGGGGTGA
back to top