mRNA_Ecto-sp13_S_contig850.19900.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig850.19900.1
Unique NamemRNA_Ecto-sp13_S_contig850.19900.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig850.19900.1 vs. uniprot
Match: D7G6B5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B5_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 3.360e-107
Identity = 200/253 (79.05%), Postives = 209/253 (82.61%), Query Frame = 1 
Query:  256 MVVPSSVSWEDVEQGAKEVMKHEIWKTQTWKEFKTTIAAAIHVPVQELTQHKVALQALIAQGGEEGANGNEDDHPEEGVDDXXXXXXXXXXXXXXXXXXSDQGDAMPAMRDLARAMNLGPRPLRGLKQMKRRDAERTLRERLISSGAQFKGLFPSSREVWQKVTHDANPHHHHSHTFVTRQIAQARRRTATKNDLDGMDLGNVVQGSRRRETSEDYSSPPNKKRRSVDEQEGTSDVGDCPESHNDESEEEFEL 1014
            MVVPS VSWEDVEQGAKEVMKH+IWKTQTWKEFKTTIAA IHVPV+ELTQHKVALQALIAQ GEEGANGNEDDH E     XXXXXXXXXXXXXXXXX +DQGDAMPAMRDLARAMNLGPRPL+GLKQMKRRDAERTLRERLISSGAQFKGLFPSS+E                       IAQARRRT TKNDLDGMDLGNVVQGSRRRE SED+ SP      SV+EQEGTSD GDC +SH+DESEEEFEL
Sbjct:    1 MVVPSIVSWEDVEQGAKEVMKHKIWKTQTWKEFKTTIAATIHVPVKELTQHKVALQALIAQEGEEGANGNEDDHTEXXXXXXXXXXXXXXXXXXXXXXDNDQGDAMPAMRDLARAMNLGPRPLQGLKQMKRRDAERTLRERLISSGAQFKGLFPSSKE-----------------------IAQARRRTETKNDLDGMDLGNVVQGSRRRERSEDHGSPXXXXXXSVNEQEGTSDGGDCSKSHDDESEEEFEL 230
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig850.19900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6B5_ECTSI3.360e-10779.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig850contigEcto-sp13_S_contig850:15726..18410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1241
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_001240.1
Cds size762
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464120.6317558-UTR-Ecto-sp13_S_contig850:15725..159491681464120.6317558-UTR-Ecto-sp13_S_contig850:15725..15949Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig850 15726..15949 -
1681464120.6748364-UTR-Ecto-sp13_S_contig850:18155..184101681464120.6748364-UTR-Ecto-sp13_S_contig850:18155..18410Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig850 18156..18410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464120.6422882-CDS-Ecto-sp13_S_contig850:15949..162281681464120.6422882-CDS-Ecto-sp13_S_contig850:15949..16228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig850 15950..16228 -
1681464120.653382-CDS-Ecto-sp13_S_contig850:16404..165311681464120.653382-CDS-Ecto-sp13_S_contig850:16404..16531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig850 16405..16531 -
1681464120.6641054-CDS-Ecto-sp13_S_contig850:17799..181551681464120.6641054-CDS-Ecto-sp13_S_contig850:17799..18155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig850 17800..18155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig850.19900.1prot_Ecto-sp13_S_contig850.19900.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig850 15950..18155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig850.19900.1

>prot_Ecto-sp13_S_contig850.19900.1 ID=prot_Ecto-sp13_S_contig850.19900.1|Name=mRNA_Ecto-sp13_S_contig850.19900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
MVVPSSVSWEDVEQGAKEVMKHEIWKTQTWKEFKTTIAAAIHVPVQELTQ
HKVALQALIAQGGEEGANGNEDDHPEEGVDDEDGDEDDRNECGSSSSDDS
DQGDAMPAMRDLARAMNLGPRPLRGLKQMKRRDAERTLRERLISSGAQFK
GLFPSSREVWQKVTHDANPHHHHSHTFVTRQIAQARRRTATKNDLDGMDL
GNVVQGSRRRETSEDYSSPPNKKRRSVDEQEGTSDVGDCPESHNDESEEE
FEL*
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mRNA from alignment at Ecto-sp13_S_contig850:15726..18410-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig850.19900.1 ID=mRNA_Ecto-sp13_S_contig850.19900.1|Name=mRNA_Ecto-sp13_S_contig850.19900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2685bp|location=Sequence derived from alignment at Ecto-sp13_S_contig850:15726..18410- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGGAGCCCCGAAACTACGGACAACGGAACCGCGGTATCGCGTATGTAC
CGGTCCATGCCTCAGATTGAAACGACATCTTGGGTGTTTCACTCGCACTA
GCCTTGCGCACCAGGTCTTGCTCCGGGAAGCCGACATCGTATCCCACCAA
AACCCCACCTGCCCACGTTGAGGATCAGCAAGTGCCTAGATTCCCACTTC
TAGCTCTCGTACACAGACACCTGTAGACGAGACAGCGAGAGAGAGAGGGA
GAGCGATGGTCGTGCCATCGAGTGTCTCCTGGGAGGATGTCGAGCAAGGG
GCCAAGGAGGTTATGAAGCACGAAATATGGAAGACGCAAACATGGAAGGA
GTTCAAGACAACGATTGCGGCCGCTATTCATGTCCCCGTTCAGGAGCTCA
CACAACATAAAGTTGCGCTTCAGGCGCTCATCGCACAGGGAGGCGAAGAA
GGGGCCAACGGCAATGAAGACGACCACCCGGAGGAAGGGGTTGATGACGA
GGATGGTGACGAGGATGATCGCAACGAGTGTGGATCTTCGTCATCAGATG
ACAGCGATCAAGGCGATGCCATGCCAGCAATGAGAGATTTGGCCAGGGCG
ATGAACCTTGGGTGGGTGTAGCATGCATATCACCAGAGTAACAGCAGTTG
GTGGTCGATGCATTTGCTTTGTTCCAAAGATCCAACAAGAGCGACAACGG
CTGTCACATTCGTAAGTTCCCCAATTTCCAATTTCACACTTCCTAAAAAG
CATCAACGGCTATTTTTATCACGCCCAGCAGGCATCGAAGATATGCTGTA
GGCATGCATATCTGCTGTGCTTTCAGGCCAACTCTTATGGAAGGTCTGCA
GCAGTTCCTCAGATTTGGGTTTGGAGTGAGGCACAAGACGACAGGACATA
CCCCTCCTAAGAGTGCTGTTGCTGTTACTATTTGCTGGAAAACCGAGATT
TCATATTCCATTGCCGGGATTTGGAGCAGCGAGATGTTTCGGCCGGGATT
TAGGTGTGACGTCGTTGTGAAGGCGTTGTTGCGCGCATGCGGCACCGCGT
ACACGTTTGTTTACACTTTGCAATGCACCCGTGTGAGCTTGTTGGTGTGT
AGGAACGTGTCGCGGCGTTTGTATGGTGATGACATGTACAGACCAGATGA
TTGCTTGTGTGTCGCCTCTCTGCTGAGCATCTTGAAAACACCAACAATCG
ACAACATGTCCACGAGCCAGGATTATGTAGGGAGCATTTGATGAAGAGAG
GCAAGGAGGACACTCCTTCTGAGATCGATCCTGGAAGGAAAAAAAGGAAA
AAAGGGCACAGATCATGTACGCTGCTGCTGCAGCTCTCTTGCTCTTTACA
AGTACACAACCGGCTGTGCCTTTTTGCTTGTTGTGCGCTGATGATGTGGC
GCTGCTCAGCACGGAGCAGGTGTGTGGATCCCTTCCGGTCTTACGACAAT
AGCCGCTCTTGATGCCTGTCGTGTGTGGTGGTCCGAAAGGAACCAACCGT
CGGTTGGTTGACTGTCAGTGTTTCTCCTTTTTTTGACCGTACTGGTTGAT
CTCAATAATCGCAGCTGCTCTCTGTTGGCCTGGGAATTTCCACCTGTTGC
CTGATTCTGTGGTTTCCAGACCAATTATTGGTTACAATATCCGTAAGAGT
TGGTTGGCCCGAGCACCACTTTATCTGGGGAATAACTTTGTTTCAGGTAT
ACATACATGCCACGGGAACTAGTTTGTATGGGGGCCCCTCTCTCGGGATC
GTCCTGTACAGGTATTCTCCTCCTTTGGGCGGTCCAACGCAGCTGTTGCA
AGATGAAGATTTGCACGTCCTGTTCTTCGCTCGACCAACCAACCACCCAA
CCGCTTTCTTGCCTCGTTGCTCGTTGCAGACCCAGACCGTTACGAGGTTT
GAAGCAGATGAAGAGGCGCGATGCGGAGAGAACACTTCGAGAGAGGCTCA
TCTCTTCTGGCGCACAGTTCAAAGGCTTATTCCCGTCATCCAGAGAGGTA
TGGCAAGTAACACATAACTGTTGTTGAATACTTGTGAGCTTCAACGTGCT
AAATCCAAATTCGAAGTATACAACTCACCGAGCTGGTGAACTTGCCCCGA
ACATACAGGCAGCCTTTTGATTCCGCCCTCTACTCCCGACCCGCAGTCGT
CGGTCCACCTTCCTGCACGTGTGCTTGTACAGAAGGTGACACATGACGCG
AATCCGCACCACCACCACAGCCATACTTTTGTCACTCGGCAGATCGCGCA
AGCACGGCGAAGAACCGCAACGAAGAACGACCTGGACGGCATGGACCTTG
GCAACGTCGTCCAGGGATCGCGGCGACGAGAAACGTCAGAAGACTACAGC
TCTCCTCCCAACAAAAAACGGCGCAGTGTGGACGAACAGGAAGGGACCTC
TGACGTTGGAGATTGTCCGGAGAGTCATAACGATGAGTCTGAGGAGGAGT
TTGAGCTTTAGTGACCAAAGACTTATGGTGTTTTTCGTTGCCGCGACAAA
CTTTCACCGAGACGATGTAGATAAAAGTGGTTTGCGGGCTGCTTTCGCGT
CTAGCGTGTTGGATGTATCTCCTGTCCCTGTACCCGTGATTCGTGTGACC
AGCGGGGCCTGGCAAAGAGGACCATGGGGTGATACAAGTCTTCATCGAAA
GTCGCCATCTGTCGTGCAGTATTGATGCGAGGGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig850:15726..18410-

>mRNA_Ecto-sp13_S_contig850.19900.1 ID=mRNA_Ecto-sp13_S_contig850.19900.1|Name=mRNA_Ecto-sp13_S_contig850.19900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig850:15726..18410- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGTGCCATCGAGTGTCTCCTGGGAGGATGTCGAGCAAGGGGCCAA
GGAGGTTATGAAGCACGAAATATGGAAGACGCAAACATGGAAGGAGTTCA
AGACAACGATTGCGGCCGCTATTCATGTCCCCGTTCAGGAGCTCACACAA
CATAAAGTTGCGCTTCAGGCGCTCATCGCACAGGGAGGCGAAGAAGGGGC
CAACGGCAATGAAGACGACCACCCGGAGGAAGGGGTTGATGACGAGGATG
GTGACGAGGATGATCGCAACGAGTGTGGATCTTCGTCATCAGATGACAGC
GATCAAGGCGATGCCATGCCAGCAATGAGAGATTTGGCCAGGGCGATGAA
CCTTGGACCCAGACCGTTACGAGGTTTGAAGCAGATGAAGAGGCGCGATG
CGGAGAGAACACTTCGAGAGAGGCTCATCTCTTCTGGCGCACAGTTCAAA
GGCTTATTCCCGTCATCCAGAGAGGTATGGCAAAAGGTGACACATGACGC
GAATCCGCACCACCACCACAGCCATACTTTTGTCACTCGGCAGATCGCGC
AAGCACGGCGAAGAACCGCAACGAAGAACGACCTGGACGGCATGGACCTT
GGCAACGTCGTCCAGGGATCGCGGCGACGAGAAACGTCAGAAGACTACAG
CTCTCCTCCCAACAAAAAACGGCGCAGTGTGGACGAACAGGAAGGGACCT
CTGACGTTGGAGATTGTCCGGAGAGTCATAACGATGAGTCTGAGGAGGAG
TTTGAGCTTTAG
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