mRNA_Ecto-sp13_S_contig850.19899.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig850.19899.1 vs. uniprot
Match: D7G6B4_ECTSI (Rab11B, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B4_ECTSI) HSP 1 Score: 446 bits (1147), Expect = 2.950e-158 Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 1
Query: 1 MASRSSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPSFRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDLPNADVTEAEQESSAMRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGQQAAPPKEAAPKGIVLATPKPRAEEDKLDCC 687
MASRSSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPSFRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDLPNADVTEAEQESSAMRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGQQAAPPKEAAPKGIVLATPKPRAEEDKL+CC
Sbjct: 1 MASRSSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPSFRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDLPNADVTEAEQESSAMRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGQQAAPPKEAAPKGIVLATPKPRAEEDKLECC 229
BLAST of mRNA_Ecto-sp13_S_contig850.19899.1 vs. uniprot
Match: A0A6G0WZ29_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZ29_9STRA) HSP 1 Score: 227 bits (579), Expect = 8.260e-72 Identity = 121/235 (51.49%), Postives = 162/235 (68.94%), Query Frame = 1
Query: 1 MASRSSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPS---FRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDL---PNADVTEAEQESSAMRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGQQAAPPKEAAPKGIVLATPKPRAEEDKLDCC 687
M + +YD L+K+VLVGD VGKTNLLA +T+ + D + + F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITSSHY+RA+GAL+VYDV+SRS+F+NA+ WL+EL+N+AD+NS+LL L+LVGNK+DL P+ V E +A+ S R SAKTGQ V +AFE+L++ VY + R A P+EA + L+ P P + K +CC
Sbjct: 1 MTCAADQQYDELYKVVLVGDPGVGKTNLLAYFTATEDEMAIDSSTNASKIFSAVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRSTFDNAQSHWLKELRNSADTNSTLLSCLMLVGNKIDLAKDPSVSVVSQEDHDAAISEAGIMSIRASAKTGQNVVEAFEKLVIEVYNQDKARN---AKPEEAPAPSVDLSAPAP--PKKKNNCC 230
BLAST of mRNA_Ecto-sp13_S_contig850.19899.1 vs. uniprot
Match: A0A024UAY6_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024UAY6_9STRA) HSP 1 Score: 223 bits (567), Expect = 4.940e-70 Identity = 121/227 (53.30%), Postives = 160/227 (70.48%), Query Frame = 1
Query: 22 EYDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPS---FRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDLPNAD--VTEAEQESSAMRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGQQAAPPKEAAPKGIVLATPKPRAEEDKLDCC 687
+YD L+K+VLVGD VGKTNLLA +T+ D+ D + + F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITSSHY+RA+GAL+VYDV+SR+SF+NA+ WL+EL+N+AD+NS+LL L+LVGNK+DL AD VT + ES+ + R SAKTGQ V +AFE+L++ VY + R A P E P + L+ P + + K CC
Sbjct: 7 QYDELYKVVLVGDPGVGKTNLLAYFTASDEDMAIDASTNASKIFSNVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRTSFDNAQGHWLKELRNSADTNSTLLSCLMLVGNKIDLDPADTVVTPEDHESAVLAADGILDIRASAKTGQNVVEAFEKLVIEVYNQDKARN--ATP--EEKPSALDLSAPVEKKK--KNSCC 227
BLAST of mRNA_Ecto-sp13_S_contig850.19899.1 vs. uniprot
Match: A0A6S9ECQ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ECQ7_HETAK) HSP 1 Score: 221 bits (563), Expect = 1.750e-69 Identity = 114/188 (60.64%), Postives = 143/188 (76.06%), Query Frame = 1
Query: 16 SLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPSFRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDLPNADVT-EAEQESSAMRMGLASSARVSAKTGQGVDKAFERLILRVYE 576
S +YD ++KIVLVGD VGKTNLL+C+TS K +G V SF +RK TVGVEFA+ +V HP+G RIKAQIWDTAGQERY AIT SHY+RA+GALLVYDVT+R SF+NA+ WL+ELK +ADS SSLL++ +L GNK+DL + V +AEQ S+A +GL+ SA+ G VD AFE LIL+VY+
Sbjct: 10 SEQYDVMYKIVLVGDPGVGKTNLLSCFTSYRKDTSENGAVVSFNENRKPTVGVEFASWIVKHPNGDRIKAQIWDTAGQERYNAITKSHYRRAAGALLVYDVTNRKSFDNAKNWWLKELKESADSESSLLENTLLCGNKIDLVDKRVVHDAEQASAAAGLGLSMHQSTSAREGTNVDDAFETLILQVYD 197
BLAST of mRNA_Ecto-sp13_S_contig850.19899.1 vs. uniprot
Match: A0A485LBE8_9STRA (Aste57867_18857 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBE8_9STRA) HSP 1 Score: 220 bits (560), Expect = 1.570e-68 Identity = 121/228 (53.07%), Postives = 158/228 (69.30%), Query Frame = 1
Query: 25 YDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPS---FRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDL---PNADVTEAEQESSAMRM-GLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGQQAAPPKEAAPKGIVLATPKPRAEEDKLDCC 687
YD L+K+VLVGD VGKTNLLA +T+ D D + + F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITSSHY+RA+GAL+VYDV+SR+SF+NA+ WL+EL+N+AD+NS+LL L+LVGNK+DL P+ V E +A+ G R SAKTGQ V +AFE+LI+ VY + R A P A + L+ P A++ K +CC
Sbjct: 36 YDELYKVVLVGDPGVGKTNLLAYFTASDDEMAIDTSTNASKIFSNVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRTSFDNAQSHWLKELRNSADTNSTLLSCLMLVGNKIDLALDPSVQVVAEEDHDAAVAAAGDVLGTRASAKTGQNVVEAFEKLIIEVYNQDKARN--AKPVDVPAAAAVDLSAPA--AQKKKNNCC 259
BLAST of mRNA_Ecto-sp13_S_contig850.19899.1 vs. uniprot
Match: A0A067CD03_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CD03_SAPPC) HSP 1 Score: 218 bits (555), Expect = 3.250e-68 Identity = 119/230 (51.74%), Postives = 157/230 (68.26%), Query Frame = 1
Query: 22 EYDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPSFR----SDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDLPN----ADVTEAEQESSAMRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGQQAAPPKEAAPKGIVLATPKPRAEEDKLDCC 687
+YD L+K+VLVGD VGKTNLLA +T+ ++ D + + + S RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITSSHY+RA+GAL+VYDV+SR++F+NA+ WL+EL+N+AD+NS+LL L+LVGNK+DL A V AE+ +AM R SAKTG+ V +AFE LI+ VY + R A P E +V T KP ++ CC
Sbjct: 3 QYDELYKVVLVGDPGVGKTNLLAYFTATEEEMAVDASTNASKIFSSSVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALVVYDVSSRATFDNAQTHWLKELRNSADNNSTLLSCLMLVGNKIDLTEGINGAPVVAAEEHDAAMAAAGVHGVRASAKTGENVVQAFENLIIEVYNQDKARNTPA--PMEP----VVDLTAKPPTKKKLPACC 226
BLAST of mRNA_Ecto-sp13_S_contig850.19899.1 vs. uniprot
Match: A0A1W0A2A3_9STRA (Rab11/RabA-family small GTPase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2A3_9STRA) HSP 1 Score: 214 bits (544), Expect = 1.560e-66 Identity = 120/234 (51.28%), Postives = 156/234 (66.67%), Query Frame = 1
Query: 22 EYDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPS---FRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDLPNAD-----VTEAEQESSAMRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGQQAAPPKEAAPKGIVLATP----KPRAEEDKLDCC 687
+YD L+K+VLVGD VGKTNLLA +T+ ++ D + F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITSSHY+RA+GAL+VYDVTS+++FENA+ WL+EL+N+ADSNS+LL L+LVGNK+DL AD V + E++A G+ + R SAKTG+ V AFE+LI+ VY + R AP ATP + K CC
Sbjct: 3 QYDELYKVVLVGDPGVGKTNLLAYFTATEEEMAMDAETNASKIFSAVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALVVYDVTSKATFENAQCHWLKELRNSADSNSTLLSCLMLVGNKIDLVAADNASTIVPPEDHEAAAKAEGVMAM-RASAKTGENVVAAFEQLIIEVYNQDKNR---------TAPVATESATPLVDLNAKVPTKKKSCC 226
BLAST of mRNA_Ecto-sp13_S_contig850.19899.1 vs. uniprot
Match: A0A024U937_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U937_9STRA) HSP 1 Score: 212 bits (539), Expect = 2.980e-66 Identity = 109/186 (58.60%), Postives = 143/186 (76.88%), Query Frame = 1
Query: 22 EYDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPS---FRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDLPNAD--VTEAEQESSAMRMGLASSARVSAKTGQGVDKAFERLIL 564
+YD L+K+VLVGD VGKTNLLA +T+ D+ D + + F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITSSHY+RA+GAL+VYDV+SR+SF+NA+ WL+EL+N+AD+NS+LL L+LVGNK+DL AD VT + ES+ + R SAKTGQ V +AFE+L++
Sbjct: 7 QYDELYKVVLVGDPGVGKTNLLAYFTASDEDMAIDASTNASKIFSNVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRTSFDNAQGHWLKELRNSADTNSTLLSCLMLVGNKIDLDPADTVVTPEDHESAVLAADGILDIRASAKTGQNVVEAFEKLVI 192
BLAST of mRNA_Ecto-sp13_S_contig850.19899.1 vs. uniprot
Match: A0A2D4CD76_PYTIN (Rab family, other n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD76_PYTIN) HSP 1 Score: 204 bits (519), Expect = 1.070e-62 Identity = 118/233 (50.64%), Postives = 153/233 (65.67%), Query Frame = 1
Query: 22 EYDYLFKIVLVGDAAVGKTNLLACY--TSQDKRQRPD--GTVPSFRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDLPNAD-------VTEAEQESSAMRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRGQQAAPPKEAAPKGIVLATPKPRAEEDKLDCC 687
+YD L+K+VLVGD AVGKTNLLA + T +K D G F S RK T+GVEF T ++ HP+GKR KAQIWDTAGQERYRAITSSHY+RA+GAL+VYDVT+R+SFENA++ WL+ELK +A +S+LL+ ++LVGNKVDL V + E +A + + + R SAKT V KAFE LI+ +Y + G+ Q+ A + I L PKP + K CC
Sbjct: 5 QYDELYKVVLVGDPAVGKTNLLASFLATEDNKPDTXDDQGQAKGFSSVRKPTIGVEFGTKIIHHPNGKRXKAQIWDTAGQERYRAITSSHYRRAAGALVVYDVTNRTSFENAQQHWLKELKASAXPSSTLLNCIMLVGNKVDLETPQSLQQPDSVPQEAHELAASELKVMNK-RTSAKTAFNVRKAFEELIISIYNEDKGKLQRMA-----TIRSITLEEPKPSGKSAK-QCC 230
BLAST of mRNA_Ecto-sp13_S_contig850.19899.1 vs. uniprot
Match: A0A7S2XV75_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV75_9STRA) HSP 1 Score: 201 bits (511), Expect = 9.590e-62 Identity = 104/184 (56.52%), Postives = 136/184 (73.91%), Query Frame = 1
Query: 25 YDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPSFRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDLPNADVTEAEQESSAMRMGLASSARVSAKTGQGVDKAFERLILRVYE 576
+D FKIVLVGD VGKTNLLA YTS K P T + RK TVGVEFAT +V HP G RIKAQIWDTAGQERY +I SHY+RA+GA++VYDVTS+ +FENA++ WL++++++A +S++++ + LVGNK DL A+VTEAE +++ +GL R SAKTG VD+AFE+LI VY+
Sbjct: 10 FDEQFKIVLVGDPGVGKTNLLAYYTSYRKGD-PSAT---YNEARKPTVGVEFATWIVRHPSGARIKAQIWDTAGQERYNSIVKSHYRRAAGAIVVYDVTSKKTFENAQRFWLQQIQDSASPDSNIMECITLVGNKTDL-QAEVTEAEHQTAMNSLGLPLEGRTSAKTGDNVDEAFEKLICLVYD 188 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig850.19899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig850.19899.1 >prot_Ecto-sp13_S_contig850.19899.1 ID=prot_Ecto-sp13_S_contig850.19899.1|Name=mRNA_Ecto-sp13_S_contig850.19899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp MASRSSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPSFRSback to top mRNA from alignment at Ecto-sp13_S_contig850:11618..14739+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig850.19899.1 ID=mRNA_Ecto-sp13_S_contig850.19899.1|Name=mRNA_Ecto-sp13_S_contig850.19899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3122bp|location=Sequence derived from alignment at Ecto-sp13_S_contig850:11618..14739+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig850:11618..14739+ >mRNA_Ecto-sp13_S_contig850.19899.1 ID=mRNA_Ecto-sp13_S_contig850.19899.1|Name=mRNA_Ecto-sp13_S_contig850.19899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig850:11618..14739+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |