mRNA_Ecto-sp13_S_contig850.19896.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig850.19896.1
Unique NamemRNA_Ecto-sp13_S_contig850.19896.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig850.19896.1 vs. uniprot
Match: D7G6B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B1_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 1.340e-114
Identity = 175/190 (92.11%), Postives = 182/190 (95.79%), Query Frame = 1 
Query:    1 PH-KQSILLNAEDGCTTFRRSVERLSAGDPKLCDFRETAITLLFLERDAFRHYPENDCQIREYFGKLIERIQNHFTGRQTEEVEGASSQGGTETTKRSSSCEREARASRCGDSSERDEETESLTARVQEEVKALRRILYGFPKTPGGVPDAFLDKQAAHSATLERDGVEEDHEHSRRARTEDPVVIDVDD 567
            PH  +SILLNAEDGCTTFR+ VERLSAGDPKLCDFRETAITLLFLERDAFRHYPEND QIREYFGKLIERIQNHFTGRQTEEVEGASSQGGTET KRSSSCERE RA+RCGDSSERDEETESLTARV+EEV+ALR ILYGFPKTPGGVPDAFLDKQAAHSATLERDGVEEDH+HSR AR+EDPVVIDVDD
Sbjct:  196 PHFPKSILLNAEDGCTTFRQFVERLSAGDPKLCDFRETAITLLFLERDAFRHYPENDRQIREYFGKLIERIQNHFTGRQTEEVEGASSQGGTETAKRSSSCEREPRANRCGDSSERDEETESLTARVREEVEALRSILYGFPKTPGGVPDAFLDKQAAHSATLERDGVEEDHDHSRSARSEDPVVIDVDD 385
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig850.19896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6B1_ECTSI1.340e-11492.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig850contigEcto-sp13_S_contig850:82..1013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size570
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_001200.1
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464120.3133333-CDS-Ecto-sp13_S_contig850:81..2551681464120.3133333-CDS-Ecto-sp13_S_contig850:81..255Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig850 82..255 +
1681464120.3249729-CDS-Ecto-sp13_S_contig850:617..10131681464120.3249729-CDS-Ecto-sp13_S_contig850:617..1013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig850 618..1013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig850.19896.1prot_Ecto-sp13_S_contig850.19896.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig850 82..1013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig850.19896.1

>prot_Ecto-sp13_S_contig850.19896.1 ID=prot_Ecto-sp13_S_contig850.19896.1|Name=mRNA_Ecto-sp13_S_contig850.19896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
PHKQSILLNAEDGCTTFRRSVERLSAGDPKLCDFRETAITLLFLERDAFR
HYPENDCQIREYFGKLIERIQNHFTGRQTEEVEGASSQGGTETTKRSSSC
EREARASRCGDSSERDEETESLTARVQEEVKALRRILYGFPKTPGGVPDA
FLDKQAAHSATLERDGVEEDHEHSRRARTEDPVVIDVDD*
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mRNA from alignment at Ecto-sp13_S_contig850:82..1013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig850.19896.1 ID=mRNA_Ecto-sp13_S_contig850.19896.1|Name=mRNA_Ecto-sp13_S_contig850.19896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=932bp|location=Sequence derived from alignment at Ecto-sp13_S_contig850:82..1013+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCACAAACAGTCCATACTCCTGAATGCTGAGGATGGCTGCACGACCTT
CCGACGATCCGTAGAGAGGCTCTCTGCAGGAGATCCGAAGTTGTGCGACT
TTCGCGAGACGGCCATTACTCTTCTCTTTCTGGAGCGAGATGCCTTCCGA
CACTATCCCGAGAACGATTGCCAGGTGAGGAGAGGGCCGTACGTTGTACA
AATAGTTCCGTTTTAGCCGACCTAGGGTCTGGGGCTCGCGATTTTACCTT
GTGTGCCGTCGAGACACGAGAGGCGGAGGAAGTAGGTATTGAAAAACTCA
CTCTGACAAGAACGCAAATTTTGCCAACCCAGCGGTTGTCCTAGAGATTG
GCTCCGAGTATCGCGTGCCTGCTGCATGGCTCCACTGAAGGAGGGACACT
GGTGTTGTGTACCGTGGTTTTTCTTGTGTCGTACCAGCAACGATTTTCTA
ATCGGTGGTGCATTGGATGCTGAAACCCGTTGGGCCGCCACACAGACACT
CAATCGCACATGATTCGTTCTTGTGTGTCGGAACAGATACGAGAGTACTT
CGGTAAACTCATCGAAAGAATACAAAACCACTTTACTGGGCGTCAAACGG
AGGAGGTGGAGGGCGCGTCGTCACAGGGAGGCACGGAAACCACCAAGAGA
TCTAGCTCGTGCGAACGAGAAGCAAGAGCCAGTCGTTGTGGCGACAGCAG
CGAGCGCGATGAAGAGACTGAAAGCCTAACAGCAAGGGTACAAGAGGAAG
TCAAAGCCTTGCGTCGTATTTTGTATGGCTTCCCGAAGACGCCAGGTGGG
GTTCCGGACGCGTTTCTAGACAAACAAGCGGCACATAGTGCCACGTTAGA
GAGGGATGGCGTGGAAGAGGACCATGAACACAGCCGTCGGGCTCGAACCG
AGGATCCCGTTGTCATCGACGTTGACGATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig850:82..1013+

>mRNA_Ecto-sp13_S_contig850.19896.1 ID=mRNA_Ecto-sp13_S_contig850.19896.1|Name=mRNA_Ecto-sp13_S_contig850.19896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig850:82..1013+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCACAAACAGTCCATACTCCTGAATGCTGAGGATGGCTGCACGACCTT
CCGACGATCCGTAGAGAGGCTCTCTGCAGGAGATCCGAAGTTGTGCGACT
TTCGCGAGACGGCCATTACTCTTCTCTTTCTGGAGCGAGATGCCTTCCGA
CACTATCCCGAGAACGATTGCCAGATACGAGAGTACTTCGGTAAACTCAT
CGAAAGAATACAAAACCACTTTACTGGGCGTCAAACGGAGGAGGTGGAGG
GCGCGTCGTCACAGGGAGGCACGGAAACCACCAAGAGATCTAGCTCGTGC
GAACGAGAAGCAAGAGCCAGTCGTTGTGGCGACAGCAGCGAGCGCGATGA
AGAGACTGAAAGCCTAACAGCAAGGGTACAAGAGGAAGTCAAAGCCTTGC
GTCGTATTTTGTATGGCTTCCCGAAGACGCCAGGTGGGGTTCCGGACGCG
TTTCTAGACAAACAAGCGGCACATAGTGCCACGTTAGAGAGGGATGGCGT
GGAAGAGGACCATGAACACAGCCGTCGGGCTCGAACCGAGGATCCCGTTG
TCATCGACGTTGACGATTGA
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