prot_Ecto-sp13_S_contig124.1989.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig124.1989.1
Unique Name	prot_Ecto-sp13_S_contig124.1989.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	170

Homology

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BLAST of mRNA_Ecto-sp13_S_contig124.1989.1 vs. uniprot
Match: A0A6H5JWV5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWV5_9PHAE)

HSP 1 Score: 341 bits (874), Expect = 1.270e-118
Identity = 166/169 (98.22%), Postives = 167/169 (98.82%), Query Frame = 0

Query:    1 MTVNVPWSTLRPNPRDQRERAAAEFPGGGEAPPLDKDGEPEIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLVRKEDDFWNVLIASAGSFAPMLAVPAMRSRYPYAAILIAMDTLNNHIL 169
            MTVNVPWSTLRPNPRDQRERAAAEFPGGG+APPLDKDGEPEIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKL RKEDDFWNVLIASAGSFAPML VPAMRSRYPYAAILIAMDTLNNHIL
Sbjct:    1 MTVNVPWSTLRPNPRDQRERAAAEFPGGGKAPPLDKDGEPEIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLARKEDDFWNVLIASAGSFAPMLVVPAMRSRYPYAAILIAMDTLNNHIL 169

[Close]

BLAST of mRNA_Ecto-sp13_S_contig124.1989.1 vs. uniprot
Match: A0A835YQU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU0_9STRA)

HSP 1 Score: 146 bits (369), Expect = 8.740e-42
Identity = 80/167 (47.90%), Postives = 108/167 (64.67%), Query Frame = 0

Query:    3 VNVPWSTLRPNPRDQRERAAAEFPGGGEAPPLDKDGEPEIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLVRKEDDFWNVLIASAGSFAPMLAVPAMRSRYPYAAILIAMDTLNNHIL 169
            VNVPW  LR NPR +R+R + E     E+ P + D      +D+    +++ FG   GGVTGI FG MD HR I     G+F T A K KE TR+TA +GT+F G+F  YQG+KYG +  R ED F+NV +A+A S AP++  PA+R+R PY A L+A+DTLN+H+L
Sbjct:    6 VNVPWRELRHNPRTERDRLS-EAELSDESKP-ESDATFMDRFDMGMMNRKLIFGVACGGVTGIMFGLMDSHRVI--SKTGQFFTLAAKVKETTRMTAFTGTVFGGYFAAYQGIKYGIQAYRGEDTFFNVFMATAISIAPVVPFPALRARLPYMAFLVAIDTLNSHVL 168

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig124.1989.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig124.1989.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JWV5_9PHAE	1.270e-118	98.22	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YQU0_9STRA	8.740e-42	47.90	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 74..93
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 116..126
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 127..145
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 53..73
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 94..115
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 146..169
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..52
None	No IPR available	TMHMM	TMhelix		coord: 97..115
None	No IPR available	TMHMM	TMhelix		coord: 128..147
None	No IPR available	TMHMM	TMhelix		coord: 54..76

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig124	contig	Ecto-sp13_S_contig124:17817..19708 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig124.1989.1	mRNA_Ecto-sp13_S_contig124.1989.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig124 16920..20217 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig124.1989.1 ID=prot_Ecto-sp13_S_contig124.1989.1|Name=mRNA_Ecto-sp13_S_contig124.1989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
MTVNVPWSTLRPNPRDQRERAAAEFPGGGEAPPLDKDGEPEIAWDVTDFG
KRMAFGGIVGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTAL
SGTIFTGFFCTYQGMKYGAKLVRKEDDFWNVLIASAGSFAPMLAVPAMRS
RYPYAAILIAMDTLNNHIL*