mRNA_Ecto-sp13_S_contig85.19895.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85.19895.1
Unique NamemRNA_Ecto-sp13_S_contig85.19895.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig85.19895.1 vs. uniprot
Match: D8LF24_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF24_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 1.060e-63
Identity = 106/111 (95.50%), Postives = 110/111 (99.10%), Query Frame = 1
Query:   31 VQAPFETRPGEIPRRIQIERKRRLYLQHRIDSLLLERGIDHSQPPKSALAFLSPSIPPMPVEVFDNHDFEVRSPENWLSLAQDSQGNVVGLPARALFLQPDRTGSWRECKV 363
            VQAPFETRPGEIPRRIQIERKRRLYLQHRID+LLLERGIDHSQPPKSALAFLSPSIPPMPVEVFDN+DFEVRSPENWLSLAQDS+GNVVGLP RALFLQPD+TGSWRECKV
Sbjct:   75 VQAPFETRPGEIPRRIQIERKRRLYLQHRIDALLLERGIDHSQPPKSALAFLSPSIPPMPVEVFDNYDFEVRSPENWLSLAQDSEGNVVGLPGRALFLQPDQTGSWRECKV 185          
BLAST of mRNA_Ecto-sp13_S_contig85.19895.1 vs. uniprot
Match: A0A835YPW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.210e-24
Identity = 60/127 (47.24%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   31 VQAPFETRPGEIPRRIQIERKRRLYLQHRIDSLLLERGIDHSQPPKSALAFLSPSIPPMPVEVFDNHDFEVRSPENWLSLAQDSQGNVVGLPARALF----------------LQPDRTGSWRECKV 363
            VQA +ETRPG++PRRIQIERK+R Y +  +++LL  RG+D + P    L  L+P  P +P+ VFD+  FEVRSPE WLSLA    G   GLPARALF                +  D+   WREC V
Sbjct:   62 VQATYETRPGQVPRRIQIERKKRAYQEQNLEALLRARGVDVTHPTPGILQALAPRAPSLPLHVFDDESFEVRSPECWLSLAAAGGG---GLPARALFFVNGDVRAGGGGVPPAIGCDQPAQWRECVV 185          
BLAST of mRNA_Ecto-sp13_S_contig85.19895.1 vs. uniprot
Match: A0A2C6LDQ8_9APIC (Dynein heavy chain 2 n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6LDQ8_9APIC)

HSP 1 Score: 89.0 bits (219), Expect = 9.050e-20
Identity = 45/108 (41.67%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   40 PFETRPGEIPRRIQIERKRRLYLQHRIDSLLLERGIDHSQPPKSALAFLSPSIPPMPVEVFDNHDFEVRSPENWLSLAQDSQGNVVGLPARALFLQPDRTGSWRECKV 363
            PFE  P   PR++ +ER+RRLY    I+ LLLERGID+  P   A  +L       P+E FD+  ++ R PE W+ L  D +G  + L A+ L+    R+GSW+EC V
Sbjct:   41 PFEHVPAHAPRKVTVERRRRLYASLDIEELLLERGIDYGNPTFDAQRWL-------PLEPFDDTSYDDRLPEEWIDLGYDDEGRFLPLEAKGLWWDEARSGSWKECHV 141          
BLAST of mRNA_Ecto-sp13_S_contig85.19895.1 vs. uniprot
Match: A0A2A9MHM3_9APIC (Putative dynein heavy chain 2 n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MHM3_9APIC)

HSP 1 Score: 87.4 bits (215), Expect = 1.320e-17
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 1
Query:   40 PFETRPGEIPRRIQIERKRRLYLQHRIDSLLLERGIDHSQPPKSALAFLSPSIPPMPVEVFDNHDFEVRSPENWLSLAQDSQGNVVGLPARALFLQPDRTGSWRECKV 363
            PFE  P   PR++ +ER+RRLY    I+ LLLERGID++ P   +  +L       P+E FD+  ++ RSPE W+SL  D  G  + L A+ L+   D    W+EC V
Sbjct:  109 PFEQIPAHAPRKVTVERRRRLYASLDIEELLLERGIDYANPEFDSQRWL-------PLEPFDDSTYDDRSPEEWISLGYDEHGQFLPLEAKGLWWNDDGCAKWKECHV 209          
BLAST of mRNA_Ecto-sp13_S_contig85.19895.1 vs. uniprot
Match: F0YHW5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHW5_AURAN)

HSP 1 Score: 87.0 bits (214), Expect = 1.800e-17
Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   43 FETRPGEIPRRIQIERKRRLYLQHRIDSLLLERGIDHSQPPKSALAFLSPS---IPP---MPVEVFDNHDFEVRSPENWLSLAQDSQGNVVGLPARALFLQPDRT--GSWRECKV 363
            ++ +PG +PR+++IER++RLY    I++LL+ +GID+S P  S L         +PP   +P+ VFDN DFEV + + WL++  D  GN  GLP RAL ++ + T  G WR  KV
Sbjct:   92 YKPKPGGMPRKLEIERRKRLYAAQDIETLLMAKGIDYSVPYSSQLLGGKGDEGDVPPGSALPLIVFDNGDFEVHTADAWLAMGTDDAGNQQGLPCRALHMRDEATEQGVWRRGKV 206          
BLAST of mRNA_Ecto-sp13_S_contig85.19895.1 vs. uniprot
Match: UPI00097DD48D (dynein heavy chain 1, axonemal n=1 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097DD48D)

HSP 1 Score: 79.7 bits (195), Expect = 6.580e-15
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 1
Query:   31 VQAPFETRPGEIPRRIQIERKRRLYLQHRIDSLLLERGIDHSQ----PPKSALAFL----SPSIPPMPVEVFDNHDFEVRSPENWLSLAQDSQG-NVVGLPARALFLQPDRTGS 345
            VQ P+ET PG+IPR++ IER RR YL    + LL ERGID +      P S    L    SPS P  P+E+FDN D++ R+PE+WL+L  D    +   LPA+AL    ++T S
Sbjct:  130 VQIPYETIPGQIPRKLAIERCRREYLSLDFEQLLNERGIDSNVIMLGHPSSDSQHLTTTGSPSSPYPPLEIFDNEDYDCRTPEDWLALDSDEGSTDQKPLPAKALLPADNKTPS 243          
BLAST of mRNA_Ecto-sp13_S_contig85.19895.1 vs. uniprot
Match: A0A086KXA8_TOXGO (Putative dynein heavy chain 2 n=1 Tax=Toxoplasma gondii p89 TaxID=943119 RepID=A0A086KXA8_TOXGO)

HSP 1 Score: 77.4 bits (189), Expect = 1.460e-14
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 1
Query:   40 PFETRPGEIPRRIQIERKRRLYLQHRIDSLLLERGIDHSQPPKSALAFLSPSIPPMPVEVFDNHDFEVRSPENWLSLAQDSQGNVVGLPARALFLQPDRTGSWRECKV 363
            PFE  P   PR++ +ER+RRLY    I+ LL+ERGI+++ P   +  +L       P++ FD+  ++ R PE W+ L  D Q + + L A+ L  Q   +G+W +C V
Sbjct:  109 PFEQSPAHPPRKVTVERRRRLYASLNIEELLVERGINYADPQFDSQRWL-------PLDPFDDTTYDDRCPEEWILLGYDEQKHFLPLEAKGLRRQVGGSGTWEDCHV 209          
BLAST of mRNA_Ecto-sp13_S_contig85.19895.1 vs. uniprot
Match: UPI00145B0D63 (dynein heavy chain 1, axonemal-like n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=UPI00145B0D63)

HSP 1 Score: 78.2 bits (191), Expect = 2.250e-14
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 1
Query:   31 VQAPFETRPGEIPRRIQIERKRRLYLQHRIDSLLLERGIDHSQ-PPK---SALAFLSPSIPPMPVEVFDNHDFEVRSPENWLSLA-QDSQGNVVGLPARALF 321
            VQ P+ET PG+IPR+++IER+RR Y Q +I+ LL E GID +   PK   S+   +S   P +P+E+FDN +F+ R+PE+WLSL   +   +   +PA+AL 
Sbjct:   19 VQLPYETVPGKIPRKLEIERRRREYSQLKIEHLLEENGIDSNNLMPKCQESSNDCVSSVSPYLPLEIFDNVEFDCRTPEDWLSLGVTEGSSDRKPIPAKALL 120          
BLAST of mRNA_Ecto-sp13_S_contig85.19895.1 vs. uniprot
Match: A0A0G4F7Q5_VITBC (Uncharacterized protein n=5 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F7Q5_VITBC)

HSP 1 Score: 77.8 bits (190), Expect = 3.110e-14
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 1
Query:   40 PFETRPGEIPRRIQIERKRRLYLQHRIDSLLLERGIDHSQPPKSALAFLSPSIPPMPVEVFDNHDFEVRSPENWLSLAQDSQGNVVGLPARALFLQPDRTGSWRECKV 363
            P+   PG+ PR++ +ER+++LY    I  LL ERG+D+  P      +L       P+E FD+ DF+  + E W+    ++QGN + LPA+ L +  D  G WREC V
Sbjct:   89 PYVQVPGKAPRKVIVERRKKLYESLDIADLLRERGVDYGDPQFDTRRWL-------PLEPFDDTDFDTYTLEEWVQQGVNAQGNFLPLPAKGLRIDADGIGLWRECLV 189          
BLAST of mRNA_Ecto-sp13_S_contig85.19895.1 vs. uniprot
Match: A0A6P7MHD1_BETSP (dynein heavy chain 1, axonemal n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7MHD1_BETSP)

HSP 1 Score: 77.8 bits (190), Expect = 3.110e-14
Identity = 49/115 (42.61%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   31 VQAPFETRPGEIPRRIQIERKRRLYLQHRIDSLLLERGIDHSQ-PPKSA-------LAFLSPSIPPMPVEVFDNHDFEVRSPENWLSLAQDSQGNVVG------LPARALFLQPD 333
            VQ P++T+PG+IPR++QIER RR YLQ  ++ LL+E+GID     P++A        A  S   P +P+E+FDN +++ R+PE WL+L     GNV G      +PA+AL  + D
Sbjct:  114 VQIPYQTKPGQIPRKLQIERLRREYLQLDVEQLLVEKGIDSRLIMPRTADSRDGCVNAPDSHVSPYLPLEIFDNEEYDCRTPEGWLAL-----GNVEGSSHRKPIPAKALLPKND 223          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85.19895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF24_ECTSI1.060e-6395.50Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835YPW7_9STRA1.210e-2447.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2C6LDQ8_9APIC9.050e-2041.67Dynein heavy chain 2 n=1 Tax=Cystoisospora suis Ta... [more]
A0A2A9MHM3_9APIC1.320e-1740.74Putative dynein heavy chain 2 n=1 Tax=Besnoitia be... [more]
F0YHW5_AURAN1.800e-1741.74Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
UPI00097DD48D6.580e-1544.74dynein heavy chain 1, axonemal n=1 Tax=Paralichthy... [more]
A0A086KXA8_TOXGO1.460e-1436.11Putative dynein heavy chain 2 n=1 Tax=Toxoplasma g... [more]
UPI00145B0D632.250e-1445.10dynein heavy chain 1, axonemal-like n=1 Tax=Periop... [more]
A0A0G4F7Q5_VITBC3.110e-1437.04Uncharacterized protein n=5 Tax=Vitrella brassicaf... [more]
A0A6P7MHD1_BETSP3.110e-1442.61dynein heavy chain 1, axonemal n=1 Tax=Betta splen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85contigEcto-sp13_S_contig85:29676..30242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score219.2
Seed ortholog evalue1.1e-54
Seed eggNOG ortholog2880.D8LF24
Model size363
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size363
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464120.2754376-CDS-Ecto-sp13_S_contig85:29675..298911681464120.2754376-CDS-Ecto-sp13_S_contig85:29675..29891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85 29676..29891 +
1681464120.2863874-CDS-Ecto-sp13_S_contig85:30095..302421681464120.2863874-CDS-Ecto-sp13_S_contig85:30095..30242Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85 30096..30242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85.19895.1prot_Ecto-sp13_S_contig85.19895.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85 29676..30242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85.19895.1

>prot_Ecto-sp13_S_contig85.19895.1 ID=prot_Ecto-sp13_S_contig85.19895.1|Name=mRNA_Ecto-sp13_S_contig85.19895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MAHTSCSQLQVQAPFETRPGEIPRRIQIERKRRLYLQHRIDSLLLERGID
HSQPPKSALAFLSPSIPPMPVEVFDNHDFEVRSPENWLSLAQDSQGNVVG
LPARALFLQPDRTGSWRECKV
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mRNA from alignment at Ecto-sp13_S_contig85:29676..30242+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85.19895.1 ID=mRNA_Ecto-sp13_S_contig85.19895.1|Name=mRNA_Ecto-sp13_S_contig85.19895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85:29676..30242+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCACACTTCTTGCTCTCAACTCCAGGTCCAGGCCCCATTCGAGAC ACGGCCGGGAGAGATCCCTCGCCGAATACAGATCGAGCGTAAGCGCCGCC TGTACTTGCAGCATCGAATAGATTCACTTCTACTCGAGCGTGGTATCGAC CACTCACAACCGCCAAAAAGCGCGTTGGCCTTCCTGAGTCCGTCGATACC CCCGATGCCGGTAGAGGTATGTCCAATTGCGTATGCTGGTGGGTGGTGCA GCCAGCGAAAATCTACTCAGAAGTAAGTGCAGTGTCAAACGGTCGAAGGC TGCTGAACGTTCAGCGACAATGCCGTAGTTGTACCAGCCCGTCATGGAAG CCAGTTGTATAAAATTGGGCGTTATCGCATGAGGTTTGTTGTTTAACGAC CCATACAACACACTCCACAGGTGTTCGACAACCATGACTTTGAAGTGAGG AGTCCCGAAAATTGGCTGAGTCTAGCGCAAGATTCACAAGGGAATGTCGT GGGGCTACCGGCACGGGCCCTTTTCCTGCAGCCGGATCGAACGGGGTCTT GGCGGGAGTGTAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85:29676..30242+

>mRNA_Ecto-sp13_S_contig85.19895.1 ID=mRNA_Ecto-sp13_S_contig85.19895.1|Name=mRNA_Ecto-sp13_S_contig85.19895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85:29676..30242+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCACACTTCTTGCTCTCAACTCCAGGTCCAGGCCCCATTCGAGAC
ACGGCCGGGAGAGATCCCTCGCCGAATACAGATCGAGCGTAAGCGCCGCC
TGTACTTGCAGCATCGAATAGATTCACTTCTACTCGAGCGTGGTATCGAC
CACTCACAACCGCCAAAAAGCGCGTTGGCCTTCCTGAGTCCGTCGATACC
CCCGATGCCGGTAGAGGTGTTCGACAACCATGACTTTGAAGTGAGGAGTC
CCGAAAATTGGCTGAGTCTAGCGCAAGATTCACAAGGGAATGTCGTGGGG
CTACCGGCACGGGCCCTTTTCCTGCAGCCGGATCGAACGGGGTCTTGGCG
GGAGTGTAAGGTA
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