mRNA_Ecto-sp13_S_contig124.1989.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig124.1989.1
Unique NamemRNA_Ecto-sp13_S_contig124.1989.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig124.1989.1 vs. uniprot
Match: A0A6H5JWV5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWV5_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 7.990e-115
Identity = 166/169 (98.22%), Postives = 167/169 (98.82%), Query Frame = 3 
Query:  159 MTVNVPWSTLRPNPRDQRERAAAEFPGGGEAPPLDKDGEPEIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLVRKEDDFWNVLIASAGSFAPMLAVPAMRSRYPYAAILIAMDTLNNHIL 665
            MTVNVPWSTLRPNPRDQRERAAAEFPGGG+APPLDKDGEPEIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKL RKEDDFWNVLIASAGSFAPML VPAMRSRYPYAAILIAMDTLNNHIL
Sbjct:    1 MTVNVPWSTLRPNPRDQRERAAAEFPGGGKAPPLDKDGEPEIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLARKEDDFWNVLIASAGSFAPMLVVPAMRSRYPYAAILIAMDTLNNHIL 169
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BLAST of mRNA_Ecto-sp13_S_contig124.1989.1 vs. uniprot
Match: A0A835YQU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 7.330e-39
Identity = 80/167 (47.90%), Postives = 108/167 (64.67%), Query Frame = 3 
Query:  165 VNVPWSTLRPNPRDQRERAAAEFPGGGEAPPLDKDGEPEIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLVRKEDDFWNVLIASAGSFAPMLAVPAMRSRYPYAAILIAMDTLNNHIL 665
            VNVPW  LR NPR +R+R + E     E+ P + D      +D+    +++ FG   GGVTGI FG MD HR I     G+F T A K KE TR+TA +GT+F G+F  YQG+KYG +  R ED F+NV +A+A S AP++  PA+R+R PY A L+A+DTLN+H+L
Sbjct:    6 VNVPWRELRHNPRTERDRLS-EAELSDESKP-ESDATFMDRFDMGMMNRKLIFGVACGGVTGIMFGLMDSHRVI--SKTGQFFTLAAKVKETTRMTAFTGTVFGGYFAAYQGIKYGIQAYRGEDTFFNVFMATAISIAPVVPFPALRARLPYMAFLVAIDTLNSHVL 168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig124.1989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWV5_9PHAE7.990e-11598.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQU0_9STRA7.330e-3947.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig124contigEcto-sp13_S_contig124:16920..20217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score87.0
Seed ortholog evalue9e-15
Seed eggNOG ortholog65071.PYU1_T013902
Model size1177
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.function. Source PGD
EggNOG OGs1MGYM@121069,2DR8T@1,2S6DK@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003320.1
Cds size510
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig124.1989.1prot_Ecto-sp13_S_contig124.1989.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig124 17817..19708 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462659.7255325-UTR-Ecto-sp13_S_contig124:16919..169971681462659.7255325-UTR-Ecto-sp13_S_contig124:16919..16997Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig124 16920..16997 +
1681462659.7358572-UTR-Ecto-sp13_S_contig124:17736..178161681462659.7358572-UTR-Ecto-sp13_S_contig124:17736..17816Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig124 17737..17816 +
1681462659.780717-UTR-Ecto-sp13_S_contig124:19708..202171681462659.780717-UTR-Ecto-sp13_S_contig124:19708..20217Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig124 19709..20217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462659.7448034-CDS-Ecto-sp13_S_contig124:17816..179901681462659.7448034-CDS-Ecto-sp13_S_contig124:17816..17990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig124 17817..17990 +
1681462659.757291-CDS-Ecto-sp13_S_contig124:18445..184791681462659.757291-CDS-Ecto-sp13_S_contig124:18445..18479Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig124 18446..18479 +
1681462659.7653348-CDS-Ecto-sp13_S_contig124:18837..189491681462659.7653348-CDS-Ecto-sp13_S_contig124:18837..18949Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig124 18838..18949 +
1681462659.7729027-CDS-Ecto-sp13_S_contig124:19518..197081681462659.7729027-CDS-Ecto-sp13_S_contig124:19518..19708Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig124 19519..19708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig124.1989.1

>prot_Ecto-sp13_S_contig124.1989.1 ID=prot_Ecto-sp13_S_contig124.1989.1|Name=mRNA_Ecto-sp13_S_contig124.1989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
MTVNVPWSTLRPNPRDQRERAAAEFPGGGEAPPLDKDGEPEIAWDVTDFG
KRMAFGGIVGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTAL
SGTIFTGFFCTYQGMKYGAKLVRKEDDFWNVLIASAGSFAPMLAVPAMRS
RYPYAAILIAMDTLNNHIL*
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mRNA from alignment at Ecto-sp13_S_contig124:16920..20217+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig124.1989.1 ID=mRNA_Ecto-sp13_S_contig124.1989.1|Name=mRNA_Ecto-sp13_S_contig124.1989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3298bp|location=Sequence derived from alignment at Ecto-sp13_S_contig124:16920..20217+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCTGAGCGAGAGAGGGTGTGACCCTGGAGCAGCGGTCCTCCCGCCTTC
GCCCATTCGCTGCACCCAAAGGAGATGGGTGAGAAGGCATCCGTTCTGAG
TCTGACATTTACACATGAAAAACTGCGCTTGTGCTTGTCTATATTCATGT
GTATGCTACGTGTACAGTAGATGATGTCCGTGAACTCCCATGTCCCCTAT
GGACTACTGCTGTATATATACAGCAGTAAAAGAGACTCGTCCTGCTGCGA
TAGTCTGCAACAGTAACAGGCCTCTCTTCCTGCTGCTGCTGTAGTCTTCA
CTCTTGAATATTTGTTCGTGTGGAGGCTGCTAAAGATAATGTCACCCAGT
AACTCCTTTACGCTACGCACGAGAGTGTAAGACCTTGAACATGTCCGACG
TACACCTACGCGTAGATGCCGCGCCTACAGCGTAGACTACAATAGTATGT
AGTTGTCACCTCCAGCAGACTCTCACCGACGCCAGGTACTCCTCTCCATG
GTCGCATCGATGCCCGCTGCCGATCGCCATGTGATCGGAGCAAAATACCT
GGCGACACGCTGGGCAAGCATATGGAAGAAAGTCGTGTTGACGACAGCCA
GGGTATGAGCACAACTTCGCCCCGAACTCGGCCATCCGCAGGCCTCCGGT
CACTTTGCTCTGTTAGTCTGTCGTCGTCGGTCGGGTGCGTGCTGTTGGTT
TCTTTTCGGCACATGCCGGCGGGACTGTCCAGATCGGCCAATCAAATCGG
TTTGTATTGCTGCTCTTTGCTCTTTGCTCTCTGCTCTCCTCTCTCTCTGC
CTGGGTGCCAACTGCAGCAGCAAGCTTTGGTAAATAGCCAGCAGCGGTAG
ACGACGGCAAAGTGTCTTCTCGTGTCTTCAAGGAGAGCTGGTAGAAGATG
ACGGTGAACGTTCCATGGTCGACACTGAGGCCCAATCCACGAGATCAGCG
AGAGAGAGCGGCGGCAGAGTTCCCGGGCGGCGGAGAGGCGCCGCCCTTGG
ACAAAGACGGGGAGCCTGAAATCGCATGGGATGTCACGGACTTTGGCAAA
CGCATGGCCTTTGGGGGCATTGTGAGTGACGGACATGGAGGCGTGCCTGT
TCTTCCCCTCCCGCTACCGCAGATACTGCTGTGTTGGCAACCTGACCTAC
TCTGTCACTGCTACTGCTACCGCACATAAACTTCCCAGCTCGGTTGTTGC
CGCGCCTGTCCACAACGAAGGGGGCTGTCAATACCGACCAGGGTCGTGTT
TAGGTTAACGTCTTTGACAACCTTCCTTGCAAGTATCGGTCGGTTTTTAA
ACCCTCTTAATTTGCGGAGCACTCGAGCTTTGACAGTGTAGGTAGTGTGC
GATGACTTGCACTTTTATGTCATCTACTCGTGGGATGACGTTGGGAAGGC
GGCCTTTGTGTCCGTTAGGTGGTTTGGTGCGGTACAGTAGCATGTACCTC
CGACGTTCGAGTGCATCACCATGGCTGACTTCTTCTTCGCTACGCCTTAT
TTCTCGCGTGTATCAATCTTCGATAGGTCGGGGGCGTCACGGGGATAACG
TTCGGAGCAAGTGAGTCGGGGGTGAAAGGGTTGATGTGCGCTCACATGCA
GACAAACGTAGGCTACAATCCATGGTGAGGTGGATCCTGCCTACAATTTT
CTGCTACATTTCGGAAGCCGCTTTGACATGGAAGATCGTACCCCCGTAGA
TCCGCATGTATCACATGCCCCACATTATAAGGTGTGTACGCACGAGTTGC
TCACCTGCAGGCTCTGGACAAACAACAACATCTCGCTGATGGGCAGGTTC
GATACTTAGCATCAAAACCCCCCGGTGGACACCAAGGCAGACCTATGACT
GATGATCTTGCATCCCCTTCATCCAAGGCTGCTGCTGCACTTGTGTTGTC
TTAACGTTTTTGTCGCAGTGGACGGCCATAGAGCCATCCGCGACGATTCG
ATGGGGAAATTCCCCACCACAGCGCTTAAAACGAAGGAATTCACGAGACT
CACGGCTCTGTCGGGCACAATTTTCACTGGGTGAGTTCTACGTTGAACAC
CTTGCCTGTGCATATGCCAAGTACTTCCTTGTCTTTTCGCGTTCGCAGGG
GGGCGAGCCATCGTGAGGTGTAAGCCACTGCGCAACAGACCGACAGCGTC
TGCACTTGGCCGGAAGGCACAAAGGAGTGACTGCTGCCGACGCTGATTTC
GTAGAGACAGCTGGACGGACGTGCGAATATACCTTACGTTTTCAAAACGC
GTCCACCCGCAATCACTCTCCCAGCAGTTTCGATCGCACGTTGTTCGACC
TTGGTCGCCGAGCGCGCAGCATAGTCTAAAACGCCGGTAAAGCCTTAGTG
CACAGATACGATAAGCATATTCTCCAGACAACAACATACATTCAGCGATA
GTCTGGTTCTTTAAATGCTGCATGGAGCGTAGGCAGCGTATTGTGCCTGG
TGTCTTCCTCTCTCCTCTCATCGTTCCTCGCGCGACTCCCAAGCTGGCTT
GCAACTGGGGTTGGGGTAAGGGGTGTTCAACTCTGTGTGAACTGCGCAAC
GCACACGGTTGACTCAACAACTACTCATACGCCTGTTTTGGACCGGCAGA
TTCTTCTGCACTTATCAGGGAATGAAGTACGGGGCGAAGCTGGTGCGAAA
AGAGGACGATTTCTGGAACGTTCTAATCGCTTCGGCGGGGTCCTTCGCCC
CCATGCTGGCGGTGCCGGCAATGCGCTCGCGGTATCCCTACGCCGCAATC
CTCATCGCGATGGACACGCTCAACAACCACATTTTGTAAAAAAATGGGCC
TTGAAGGGGAGGCAGGGTGTGGTTGGTTGTTACGAAGACGTAGACAGACG
TGGTTTGCGGGTGTTCATTAGTTCTTGGTGATGGACTTTGTTTTTGTGAA
AACGGAAGGCAGCTTATGACAGCTTCAATCCTTGCGGCCAGCGCAATACC
GCAAGTGCGTGGAGTGGATAAAGCCGTACCGAAGCATATCTTGGCGGAGC
TGGACAAATTTAGAGTTGTGGCGAACGTACGATTGTGTCGGGGTTCTTGT
AGTGAGAGGTTTCAATATTTTGGTCTTATCAGCATCTTGGAGCCAACGAG
ATCGTTCGGAGAACTCATGGGTTGTGTGTCCCGTGCTTCAGGTTTCGTTA
TTGCGCACGGTGGTGTACGAATGGGAAATCCTAGGATTCACCATCATGCT
GCGCTCGACATGTACGTTAATCTGCGTGCGGTGTTGACCCCAAAACCACA
TGTCATAATCTGTATGTCCTAGGGCTCCTGGCCGTGCGTTGTCTCCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig124:16920..20217+

>mRNA_Ecto-sp13_S_contig124.1989.1 ID=mRNA_Ecto-sp13_S_contig124.1989.1|Name=mRNA_Ecto-sp13_S_contig124.1989.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig124:16920..20217+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGTGAACGTTCCATGGTCGACACTGAGGCCCAATCCACGAGATCA
GCGAGAGAGAGCGGCGGCAGAGTTCCCGGGCGGCGGAGAGGCGCCGCCCT
TGGACAAAGACGGGGAGCCTGAAATCGCATGGGATGTCACGGACTTTGGC
AAACGCATGGCCTTTGGGGGCATTGTCGGGGGCGTCACGGGGATAACGTT
CGGAGCAATGGACGGCCATAGAGCCATCCGCGACGATTCGATGGGGAAAT
TCCCCACCACAGCGCTTAAAACGAAGGAATTCACGAGACTCACGGCTCTG
TCGGGCACAATTTTCACTGGATTCTTCTGCACTTATCAGGGAATGAAGTA
CGGGGCGAAGCTGGTGCGAAAAGAGGACGATTTCTGGAACGTTCTAATCG
CTTCGGCGGGGTCCTTCGCCCCCATGCTGGCGGTGCCGGCAATGCGCTCG
CGGTATCCCTACGCCGCAATCCTCATCGCGATGGACACGCTCAACAACCA
CATTTTGTAA
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