mRNA_Ecto-sp13_S_contig8492.19886.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8492.19886.1
Unique NamemRNA_Ecto-sp13_S_contig8492.19886.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8492.19886.1 vs. uniprot
Match: D7FLP4_ECTSI (rRNA adenine N(6)-methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLP4_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 3.600e-19
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 3 
Query:  345 AKTFTARSNTDMWCRLSVNTQLLAKVDQLFKVNRNNVRPPPKVDSRVV 488
            A+  TAR NTDMWCRLSVNTQLLAKVDQLFKVNRNN RPPPKVDSRVV
Sbjct:  115 AQRLTARPNTDMWCRLSVNTQLLAKVDQLFKVNRNNFRPPPKVDSRVV 162
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BLAST of mRNA_Ecto-sp13_S_contig8492.19886.1 vs. uniprot
Match: A0A7S2XVT6_9STRA (rRNA adenine N(6)-methyltransferase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVT6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.730e-14
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  345 AKTFTARSNTDMWCRLSVNTQLLAKVDQLFKVNRNNVRPPPKVDSRVV 488
            AK  +A+   DM+CRLSVNTQLLA+VDQL KV RNN RPPPKV+SRVV
Sbjct:   19 AKRLSAKPGEDMYCRLSVNTQLLARVDQLMKVGRNNFRPPPKVESRVV 66
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BLAST of mRNA_Ecto-sp13_S_contig8492.19886.1 vs. uniprot
Match: W7TYW7_9STRA (rRNA adenine N(6)-methyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYW7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.030e-13
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  345 AKTFTARSNTDMWCRLSVNTQLLAKVDQLFKVNRNNVRPPPKVDSRVV 488
            A+  TA+   D++CRLSVNTQLLAKVDQL KV RNN RPPPKVDSRVV
Sbjct:  118 AQRLTAKPGDDLYCRLSVNTQLLAKVDQLMKVGRNNFRPPPKVDSRVV 165
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BLAST of mRNA_Ecto-sp13_S_contig8492.19886.1 vs. uniprot
Match: A0A835ZDH2_9STRA (rRNA adenine N(6)-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.900e-13
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 3 
Query:  345 AKTFTARSNTDMWCRLSVNTQLLAKVDQLFKVNRNNVRPPPKVDSRVV 488
            A   +AR   D++CRLSVNTQLLAKVDQL KV RNN RPPPKVDSRVV
Sbjct:  118 AMRLSARPGDDLYCRLSVNTQLLAKVDQLIKVGRNNFRPPPKVDSRVV 165
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BLAST of mRNA_Ecto-sp13_S_contig8492.19886.1 vs. uniprot
Match: A0A0P1AUZ9_PLAHL (Dimethyladenosine transferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUZ9_PLAHL)

HSP 1 Score: 75.9 bits (185), Expect = 5.700e-13
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 3 
Query:  345 AKTFTARSNTDMWCRLSVNTQLLAKVDQLFKVNRNNVRPPPKVDSRVV 488
            AK  +A+ N +++CRLSVNTQLLAKVDQL KV RNN RPPPKV+SRVV
Sbjct: 1051 AKRLSAKPNDELYCRLSVNTQLLAKVDQLLKVGRNNFRPPPKVESRVV 1098
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BLAST of mRNA_Ecto-sp13_S_contig8492.19886.1 vs. uniprot
Match: T0S2Y9_SAPDV (rRNA adenine N(6)-methyltransferase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S2Y9_SAPDV)

HSP 1 Score: 73.2 bits (178), Expect = 5.760e-13
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 3 
Query:  345 AKTFTARSNTDMWCRLSVNTQLLAKVDQLFKVNRNNVRPPPKVDSRVV 488
            AK  +AR   +++CRLSVNTQLLAKVDQL KV RNN RPPPK +SRVV
Sbjct:   92 AKRLSARPGDELYCRLSVNTQLLAKVDQLIKVGRNNFRPPPKAESRVV 139
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BLAST of mRNA_Ecto-sp13_S_contig8492.19886.1 vs. uniprot
Match: A0A485L1R3_9STRA (rRNA adenine N(6)-methyltransferase n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A485L1R3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.710e-13
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  345 AKTFTARSNTDMWCRLSVNTQLLAKVDQLFKVNRNNVRPPPKVDSRVV 488
            AK  +AR   +++CRLSVNTQLLAKVDQL KV RNN RPPPKV+SRVV
Sbjct:  161 AKRLSARPGDELYCRLSVNTQLLAKVDQLLKVGRNNFRPPPKVESRVV 208
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BLAST of mRNA_Ecto-sp13_S_contig8492.19886.1 vs. uniprot
Match: A0A067CYM8_SAPPC (rRNA adenine N(6)-methyltransferase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CYM8_SAPPC)

HSP 1 Score: 74.7 bits (182), Expect = 9.020e-13
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  345 AKTFTARSNTDMWCRLSVNTQLLAKVDQLFKVNRNNVRPPPKVDSRVV 488
            AK  +AR   +++CRLSVNTQLLAKVDQL KV RNN RPPPKV+SRVV
Sbjct:  206 AKRLSARPGDELYCRLSVNTQLLAKVDQLIKVGRNNFRPPPKVESRVV 253
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BLAST of mRNA_Ecto-sp13_S_contig8492.19886.1 vs. uniprot
Match: T0S355_SAPDV (rRNA adenine N(6)-methyltransferase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S355_SAPDV)

HSP 1 Score: 74.7 bits (182), Expect = 1.230e-12
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  345 AKTFTARSNTDMWCRLSVNTQLLAKVDQLFKVNRNNVRPPPKVDSRVV 488
            AK  +AR   +++CRLSVNTQLLAKVDQL KV RNN RPPPKV+SRVV
Sbjct:  163 AKRLSARPGDELYCRLSVNTQLLAKVDQLIKVGRNNFRPPPKVESRVV 210
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BLAST of mRNA_Ecto-sp13_S_contig8492.19886.1 vs. uniprot
Match: A0A1W0A6P4_9STRA (rRNA adenine N(6)-methyltransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6P4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.270e-12
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  345 AKTFTARSNTDMWCRLSVNTQLLAKVDQLFKVNRNNVRPPPKVDSRVV 488
            AK  +AR   +++CRLSVNTQLLAKVDQL KV RNN RPPPKV+SRVV
Sbjct:  163 AKRLSARPGDELYCRLSVNTQLLAKVDQLIKVGRNNFRPPPKVESRVV 210
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8492.19886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLP4_ECTSI3.600e-1989.58rRNA adenine N(6)-methyltransferase n=2 Tax=Ectoca... [more]
A0A7S2XVT6_9STRA2.730e-1472.92rRNA adenine N(6)-methyltransferase (Fragment) n=1... [more]
W7TYW7_9STRA1.030e-1375.00rRNA adenine N(6)-methyltransferase n=2 Tax=Monodo... [more]
A0A835ZDH2_9STRA2.900e-1375.00rRNA adenine N(6)-methyltransferase n=1 Tax=Tribon... [more]
A0A0P1AUZ9_PLAHL5.700e-1372.92Dimethyladenosine transferase n=1 Tax=Plasmopara h... [more]
T0S2Y9_SAPDV5.760e-1370.83rRNA adenine N(6)-methyltransferase n=1 Tax=Saprol... [more]
A0A485L1R3_9STRA6.710e-1372.92rRNA adenine N(6)-methyltransferase n=3 Tax=Aphano... [more]
A0A067CYM8_SAPPC9.020e-1372.92rRNA adenine N(6)-methyltransferase n=1 Tax=Saprol... [more]
T0S355_SAPDV1.230e-1272.92rRNA adenine N(6)-methyltransferase n=1 Tax=Saprol... [more]
A0A1W0A6P4_9STRA1.270e-1272.92rRNA adenine N(6)-methyltransferase n=1 Tax=Thraus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8492contigEcto-sp13_S_contig8492:737..2386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score91.7
Seed ortholog evalue2.8e-16
Seed eggNOG ortholog2880.D7FLP4
Preferred nameDIMT1
Model size491
KEGG rclassRC00003,RC03257
KEGG koko:K14191
KEGG ReactionR10716
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000179,GO:0000456,GO:0000462,GO:0001510,GO:0001708,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008988,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0019219,GO:0019222,GO:0022613,GO:0030154,GO:0030490,GO:0030684,GO:0030686,GO:0031167,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032259,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051301,GO:0052909,GO:0060255,GO:0065007,GO:0070013,GO:0070475,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140098,GO:0140102,GO:1901360,GO:1990904,GO:2000232,GO:2000234
Exons4
EggNOG free text desc.rRNA (adenine-N6,N6-)-dimethyltransferase activity
EggNOG OGsCOG0030@1,KOG0820@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_001390.3
EC2.1.1.183
Cds size390
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464119.1750617-UTR-Ecto-sp13_S_contig8492:736..8371681464119.1750617-UTR-Ecto-sp13_S_contig8492:736..837Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8492 737..837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464119.1872978-CDS-Ecto-sp13_S_contig8492:837..10101681464119.1872978-CDS-Ecto-sp13_S_contig8492:837..1010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8492 838..1010 +
1681464119.2005296-CDS-Ecto-sp13_S_contig8492:1267..13571681464119.2005296-CDS-Ecto-sp13_S_contig8492:1267..1357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8492 1268..1357 +
1681464119.2090843-CDS-Ecto-sp13_S_contig8492:1841..19141681464119.2090843-CDS-Ecto-sp13_S_contig8492:1841..1914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8492 1842..1914 +
1681464119.2180243-CDS-Ecto-sp13_S_contig8492:2332..23861681464119.2180243-CDS-Ecto-sp13_S_contig8492:2332..2386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8492 2333..2386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8492.19886.1prot_Ecto-sp13_S_contig8492.19886.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8492 838..2386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8492.19886.1

>prot_Ecto-sp13_S_contig8492.19886.1 ID=prot_Ecto-sp13_S_contig8492.19886.1|Name=mRNA_Ecto-sp13_S_contig8492.19886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
MPLKLRMGIFGEVAIGLDDDDGITLAELTRVHDGREIRHRKPSTVGQERR
DTQGQTPRYRTALGRPPNVPVCGDRVPKGVRAKTFTARSNTDMWCRLSVN
TQLLAKVDQLFKVNRNNVRPPPKVDSRVV*
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mRNA from alignment at Ecto-sp13_S_contig8492:737..2386+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8492.19886.1 ID=mRNA_Ecto-sp13_S_contig8492.19886.1|Name=mRNA_Ecto-sp13_S_contig8492.19886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1650bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8492:737..2386+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGCTCCTTGTGCTGACTGGTGCTGCTTGCTTGATGTTGTGCTTGGGAC
GATGGCACAACCACCACCTGCTATATCCTTCTGTCTTGGGCACAGACCGT
CATGCCTCTTAAGTTGAGGATGGGGATCTTCGGCGAGGTTGCTATTGGCC
TTGACGATGACGATGGCATCACACTCGCAGAACTCACAAGGGTACATGAT
GGCCGAGAAATACGGCATCGGAAACCATCTACTGTAGGTCAAGAGAGACG
AGACACCCAGGGCCAGACACCAAGGTCAGGACACTAGGCAATGTGCAGTG
GTTCAATACGCCATGAGCACTTGCTTCGCGTCTTACAGAACAGATACAGA
GGCAGTACTGCTGCCGTAGCGATCATTGCTATCCGCGTTGGCGAGCACAC
TGCTGCTGTACGAAGGGCACTGTGCACGGTGCACACCTTAAAGGTGCTGT
TTAGTGGCTACGAAGGAGCTGTATGGTCTCCTGCGGAGTCATGTTGCTTC
CGCTTTATCGTGTCGTTTCGTTTTTTGTCAGATATCGAACTGCTCTTGGC
AGACCGCCCAATGTTCCGGTGTGCGGTGATCGTGTTCCAAAAGGAGTTCG
CGCGAAGACTTTTACCGCGAGGTGCGTCGGTGTGTTGTGGTGGTTGTGGG
TGTTGTTGTTGTTGTTCTTGGTTAGTGCTGCCATACTTGTCGTTGTGATG
CTGGTGTTGTCGTTCATGTTCTTGTTCGCATTGCATTTGTGCTGTGGTTC
AGAGGCTGTGGTTAATCATTACTCCTCTTGTCAGCGGCCATGGTACCAGT
GGTTGCACATGCTTCATGTTGTTCTGTAGTGGTTCGTGTTGTTGTGGTTG
TGATGCTGGTTCAGCCGTGTTTTCATTGCTTGTTGGTGGTGGTGGTGATG
GTACTGTAGTGGTGTTATTTTTCTTGTTCTTGTGCGTATTGTTGACGTTG
CTGGTATCGCTGTTGCTGTTGCTGTTGTCGTTGCTGCTCCCGTCAGCGGC
GATGGTAACGGTGGTTGCATGTTTTCCAGAGTTCATCGTGCCTCTTTCGT
GTTGAATGACACCGCCGCTGTCCCCGCCGTCTACTTTCTTGTACATTTTG
GGAAGGTCAAACACGGACATGTGGTGCCGCCTGTCCGTGAACACGCAGCT
CTTGGCGAAGGTTGACCAGCTCTTTAAGGTACCCCCCTGAACCTACTGTA
GTCTAAGGTGTCACGTTTTTGTAGACACATGGCCAATCGCGTTTTCACAG
CTACGACTGCATGCCAGGTGTCTGTGGGGGTACAGACCGCAGTGGACGAC
CGGGAGAGGCATATGTTGAAACATGTAGCACAAGGCGTGGTCCTCGTTGT
AGTGTGCGCTTTTCACATTACAGTAAGCTGGATGTGGCTGTGCTGCAACG
CCATGAAGACCCCCTACACTTTCATTGTTGCACCACTCTTGACGAGAAAT
CGTTACGACTCCGGTCAGGTTGCTTCGTCTCTGCATTCGAACACCAGCGG
CACTCTACCCCTCGCCCCGCCTCCGTACATCCACCTACTCGTCCCCGAAA
CCCGCCTTGGGGATCGAAAAATTCGCACCCGCGCCCTCGAGCACAGGTAA
ATCGGAATAATGTCCGTCCGCCTCCCAAGGTGGACTCGCGCGTGGTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8492:737..2386+

>mRNA_Ecto-sp13_S_contig8492.19886.1 ID=mRNA_Ecto-sp13_S_contig8492.19886.1|Name=mRNA_Ecto-sp13_S_contig8492.19886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8492:737..2386+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCTTAAGTTGAGGATGGGGATCTTCGGCGAGGTTGCTATTGGCCT
TGACGATGACGATGGCATCACACTCGCAGAACTCACAAGGGTACATGATG
GCCGAGAAATACGGCATCGGAAACCATCTACTGTAGGTCAAGAGAGACGA
GACACCCAGGGCCAGACACCAAGATATCGAACTGCTCTTGGCAGACCGCC
CAATGTTCCGGTGTGCGGTGATCGTGTTCCAAAAGGAGTTCGCGCGAAGA
CTTTTACCGCGAGGTCAAACACGGACATGTGGTGCCGCCTGTCCGTGAAC
ACGCAGCTCTTGGCGAAGGTTGACCAGCTCTTTAAGGTAAATCGGAATAA
TGTCCGTCCGCCTCCCAAGGTGGACTCGCGCGTGGTCTAA
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