mRNA_Ecto-sp13_S_contig124.1987.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig124.1987.1
Unique NamemRNA_Ecto-sp13_S_contig124.1987.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig124.1987.1 vs. uniprot
Match: A0A6H5KP19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP19_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.650e-7
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2 
Query:  257 MDRTRAAVQLIAVARATATTIHSRPGGEMT 346
            MDRTRAAVQLIAVARATAT+IHSRPGGEMT
Sbjct:    1 MDRTRAAVQLIAVARATATSIHSRPGGEMT 30
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig124.1987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KP19_9PHAE3.650e-796.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig124contigEcto-sp13_S_contig124:10339..10964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size348
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-27_003300.1
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462659.571736-UTR-Ecto-sp13_S_contig124:10338..105061681462659.571736-UTR-Ecto-sp13_S_contig124:10338..10506Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig124 10339..10506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462659.5815694-CDS-Ecto-sp13_S_contig124:10506..105261681462659.5815694-CDS-Ecto-sp13_S_contig124:10506..10526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig124 10507..10526 -
1681462659.5910478-CDS-Ecto-sp13_S_contig124:10804..109641681462659.5910478-CDS-Ecto-sp13_S_contig124:10804..10964Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig124 10805..10964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig124.1987.1prot_Ecto-sp13_S_contig124.1987.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig124 10507..10964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig124.1987.1

>prot_Ecto-sp13_S_contig124.1987.1 ID=prot_Ecto-sp13_S_contig124.1987.1|Name=mRNA_Ecto-sp13_S_contig124.1987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
MNSTSTHEVEVPLHCLLFSVPSAACTLYVCTYIPLTAPTHTADTPGKIRI
RRLGGFVLS*
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mRNA from alignment at Ecto-sp13_S_contig124:10339..10964-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig124.1987.1 ID=mRNA_Ecto-sp13_S_contig124.1987.1|Name=mRNA_Ecto-sp13_S_contig124.1987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=626bp|location=Sequence derived from alignment at Ecto-sp13_S_contig124:10339..10964- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTCAACCTCAACCCACGAGGTTGAGGTTCCGCTTCACTGCTTGTT
GTTCTCCGTTCCGAGTGCGGCATGTACATTGTACGTATGTACGTATATCC
CGCTAACCGCACCAACGCACACGGCCGACACACCGGGCAAGATCAGGATC
AGACGTCTGGGTTAACGACTGTGAGTGTGTGCGGCTTTTATCTCTGCCTC
TCACGGCCGCCGCCGAGAGCAAGGCGGCGGGGGCGACGCACGAGGGGGAG
AGACGATCCAGAATTTTTCCAAGAAAAAAATCACCAAATGCAACGTCACG
AAGGAGAGCGGAACACACACAGCACAGCAACGACGTGGTGGTGTTGACAT
GTGAACTCGACACAAAAATATTCGCGCTCTCCCCCTCCGCCCTCTACGCG
ATCCTCCCCTCCACTTGCATCCATCCACCGCTCGGAAGGTGGCTTCGTGT
TATCCTGATTGGTCAACGATCGAACACTGTCTAGCACTTGCCCCGAAAGG
CTCGCGGGGCGCTGGGGGCGCAGGATACTGACTGATGGACAGGACTCGAG
CCGCAGTTCAGCTGATTGCTGTTGCCAGGGCAACCGCCACTACGATCCAC
TCAAGGCCGGGAGGGGAGATGACGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig124:10339..10964-

>mRNA_Ecto-sp13_S_contig124.1987.1 ID=mRNA_Ecto-sp13_S_contig124.1987.1|Name=mRNA_Ecto-sp13_S_contig124.1987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig124:10339..10964- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTCAACCTCAACCCACGAGGTTGAGGTTCCGCTTCACTGCTTGTT
GTTCTCCGTTCCGAGTGCGGCATGTACATTGTACGTATGTACGTATATCC
CGCTAACCGCACCAACGCACACGGCCGACACACCGGGCAAGATCAGGATC
AGACGTCTGGGTGGCTTCGTGTTATCCTGA
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