mRNA_Ecto-sp13_S_contig8477.19864.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8477.19864.1
Unique NamemRNA_Ecto-sp13_S_contig8477.19864.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8477.19864.1 vs. uniprot
Match: A0A6H5KXG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG2_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 6.060e-85
Identity = 266/315 (84.44%), Postives = 272/315 (86.35%), Query Frame = 1 
Query:    1 RTAGLDDADSKGAAGAAVQVSAPTTSGGEQQGEGEVVGGLPFAKHDDVDAGERELVAFCEPAVLLEDGGGDRSKEGVETPAGEDSSEIRSEERSSRDDDLPPPRSLSVASDAPVSASLEDDSTPPPDYDDVFRGRDGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGSEDAVNGCDDLGEPPLHSDATGAAAFVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIVLVTRLLLDADANVACTMLQALRPGWVPELGPGPGPKPYRP 945
            RTAGLDDADSKGAAGAAVQVSAPTTSGGEQQGEGEVVGGLPFAKHDDV+AG  ELVAFCEPAVLLEDGGGDRS+EGVETPAG+DSSE RSEERSSR DDLPPPRSL    DAPVS SL+DDSTPPPDYDDV RGRDGAG              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +DAVNGCDDL EP L S+ T       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LIVLVTRLLLDADANVA TMLQALRPGWVPELGPGPGPKPYRP
Sbjct:  635 RTAGLDDADSKGAAGAAVQVSAPTTSGGEQQGEGEVVGGLPFAKHDDVNAGGGELVAFCEPAVLLEDGGGDRSEEGVETPAGKDSSEKRSEERSSRSDDLPPPRSLGATGDAPVSVSLDDDSTPPPDYDDVLRGRDGAGGGSTGAERLVDGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------DDAVNGCDDLREPLLPSNTTXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLIVLVTRLLLDADANVARTMLQALRPGWVPELGPGPGPKPYRP 942
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BLAST of mRNA_Ecto-sp13_S_contig8477.19864.1 vs. uniprot
Match: D7FMR1_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR1_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 1.420e-68
Identity = 222/294 (75.51%), Postives = 225/294 (76.53%), Query Frame = 1 
Query:    1 RTAGLDDADSKGAAGAAVQVSAPTTSGGEQQGEGEVVGGLPFAKHDDVDAGERELVAFCEPAVLLEDGGGDRSKEGVETPAGEDSSEIRSEERSSRDDDLPPPRSLSVASDAPVSASLEDDSTPPPDYDDVFRGRDGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGSEDAVNGCDDLGEPPLHSDATGAAAFVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIVLVTRLLLDADANVACTMLQ 882
            RTAGLDDADSKGAAGAAVQV APTTSGGEQQGEGEVVGGLPFAKHDDVDAG RELVA CEPA LLEDGGGDRS+EGVETPA               DD LPPPRSLS A DAPVS SLEDDSTPPPDYDDV RGRD AG            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                        SLGS+DAVNGCDDLGEP L S+A GA A VGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   IVLVTRLLLDADANVACTMLQ
Sbjct: 1616 RTAGLDDADSKGAAGAAVQVMAPTTSGGEQQGEGEVVGGLPFAKHDDVDAGGRELVALCEPAALLEDGGGDRSEEGVETPAEXXXXXXXXXXXXXXDDYLPPPRSLSAAGDAPVSVSLEDDSTPPPDYDDVLRGRDRAGGGSAGAERLVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPDERLDLSLRDDHDEEDCGGGGSLGSDDAVNGCDDLGEPLLPSNAPGATAVVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---IVLVTRLLLDADANVACTMLQ 1906
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8477.19864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXG2_9PHAE6.060e-8584.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMR1_ECTSI1.420e-6875.51PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8477contigEcto-sp13_S_contig8477:4280..5226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score245.0
Seed ortholog evalue4.8e-62
Seed eggNOG ortholog2880.D7FMR1
Model size948
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2D5KP@1,2SYW4@2759
Cds size945
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464117.3111684-CDS-Ecto-sp13_S_contig8477:4279..52241681464117.3111684-CDS-Ecto-sp13_S_contig8477:4279..5224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8477 4280..5224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8477.19864.1prot_Ecto-sp13_S_contig8477.19864.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8477 4280..5224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8477.19864.1

>prot_Ecto-sp13_S_contig8477.19864.1 ID=prot_Ecto-sp13_S_contig8477.19864.1|Name=mRNA_Ecto-sp13_S_contig8477.19864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=315bp
RTAGLDDADSKGAAGAAVQVSAPTTSGGEQQGEGEVVGGLPFAKHDDVDA
GERELVAFCEPAVLLEDGGGDRSKEGVETPAGEDSSEIRSEERSSRDDDL
PPPRSLSVASDAPVSASLEDDSTPPPDYDDVFRGRDGAGGGSTGAERLVD
DSGATAGEERRQQQEGGGVGAAAAAAAVVAATPDERLNLSLRDDDDDEED
CGGGGSLGSEDAVNGCDDLGEPPLHSDATGAAAFVGGGGGGGGGGGGASA
SAAAEDDDDDDDSMGPNNNNDPLIVLVTRLLLDADANVACTMLQALRPGW
VPELGPGPGPKPYRP
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mRNA from alignment at Ecto-sp13_S_contig8477:4280..5226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8477.19864.1 ID=mRNA_Ecto-sp13_S_contig8477.19864.1|Name=mRNA_Ecto-sp13_S_contig8477.19864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=947bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8477:4280..5226+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACGGCGGGTCTGGACGATGCGGACAGCAAGGGCGCCGCCGGTGCCGC
CGTCCAAGTCTCGGCACCGACGACTTCCGGCGGGGAACAGCAAGGAGAGG
GGGAGGTGGTGGGGGGGCTTCCGTTCGCGAAGCACGACGACGTGGACGCC
GGGGAACGTGAACTGGTTGCCTTCTGCGAGCCGGCCGTGTTGCTTGAGGA
CGGTGGGGGCGACCGCTCGAAGGAGGGTGTGGAGACCCCCGCCGGAGAGG
ACTCTTCTGAGATACGTTCCGAGGAACGTTCTTCGAGAGATGATGATCTT
CCTCCTCCGCGATCTCTTAGCGTCGCCAGCGACGCTCCCGTGTCGGCGAG
TCTTGAGGACGATTCGACGCCGCCGCCTGATTATGACGACGTCTTCCGCG
GGAGAGACGGGGCAGGCGGCGGCAGCACGGGCGCGGAGAGACTAGTTGAC
GACTCGGGAGCAACTGCCGGAGAAGAACGCCGGCAGCAGCAGGAAGGAGG
AGGCGTTGGTGCGGCAGCGGCGGCGGCAGCGGTGGTGGCGGCGACGCCCG
ACGAGAGGCTCAACCTTTCCCTACGGGACGACGATGACGACGAGGAGGAC
TGCGGAGGCGGAGGCAGCCTTGGCAGCGAGGACGCCGTCAACGGCTGCGA
TGACCTTGGCGAACCACCCCTCCACTCTGACGCTACGGGGGCTGCTGCTT
TTGTCGGTGGTGGTGGCGGCGGTGGCGGCGGCGGCGGCGGCGCTAGCGCC
TCCGCAGCGGCGGAAGACGACGACGACGACGATGACAGCATGGGCCCCAA
CAACAACAACGACCCCCTGATCGTCCTCGTGACGAGGCTCCTCCTCGACG
CCGACGCGAACGTCGCGTGCACCATGTTGCAGGCCCTGCGTCCCGGGTGG
GTGCCCGAGCTCGGCCCCGGTCCCGGCCCCAAACCGTACCGACCGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8477:4280..5226+

>mRNA_Ecto-sp13_S_contig8477.19864.1 ID=mRNA_Ecto-sp13_S_contig8477.19864.1|Name=mRNA_Ecto-sp13_S_contig8477.19864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=945bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8477:4280..5226+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACGGCGGGTCTGGACGATGCGGACAGCAAGGGCGCCGCCGGTGCCGC
CGTCCAAGTCTCGGCACCGACGACTTCCGGCGGGGAACAGCAAGGAGAGG
GGGAGGTGGTGGGGGGGCTTCCGTTCGCGAAGCACGACGACGTGGACGCC
GGGGAACGTGAACTGGTTGCCTTCTGCGAGCCGGCCGTGTTGCTTGAGGA
CGGTGGGGGCGACCGCTCGAAGGAGGGTGTGGAGACCCCCGCCGGAGAGG
ACTCTTCTGAGATACGTTCCGAGGAACGTTCTTCGAGAGATGATGATCTT
CCTCCTCCGCGATCTCTTAGCGTCGCCAGCGACGCTCCCGTGTCGGCGAG
TCTTGAGGACGATTCGACGCCGCCGCCTGATTATGACGACGTCTTCCGCG
GGAGAGACGGGGCAGGCGGCGGCAGCACGGGCGCGGAGAGACTAGTTGAC
GACTCGGGAGCAACTGCCGGAGAAGAACGCCGGCAGCAGCAGGAAGGAGG
AGGCGTTGGTGCGGCAGCGGCGGCGGCAGCGGTGGTGGCGGCGACGCCCG
ACGAGAGGCTCAACCTTTCCCTACGGGACGACGATGACGACGAGGAGGAC
TGCGGAGGCGGAGGCAGCCTTGGCAGCGAGGACGCCGTCAACGGCTGCGA
TGACCTTGGCGAACCACCCCTCCACTCTGACGCTACGGGGGCTGCTGCTT
TTGTCGGTGGTGGTGGCGGCGGTGGCGGCGGCGGCGGCGGCGCTAGCGCC
TCCGCAGCGGCGGAAGACGACGACGACGACGATGACAGCATGGGCCCCAA
CAACAACAACGACCCCCTGATCGTCCTCGTGACGAGGCTCCTCCTCGACG
CCGACGCGAACGTCGCGTGCACCATGTTGCAGGCCCTGCGTCCCGGGTGG
GTGCCCGAGCTCGGCCCCGGTCCCGGCCCCAAACCGTACCGACCG
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