mRNA_Ecto-sp13_S_contig8475.19858.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8475.19858.1
Unique NamemRNA_Ecto-sp13_S_contig8475.19858.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8475.19858.1 vs. uniprot
Match: D7FJ22_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ22_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 5.970e-23
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 2 
Query:    2 THSWSKAYSFLTRWLHPMDVMYGAAEKQVWDIAAMRVDAGLVLDKLSEVTCG 157
            THSWSKAYSFL+RWLHPMD MYGAAE  VWDIAAMRVDAGLVL+KLSEVTCG
Sbjct:  273 THSWSKAYSFLSRWLHPMDAMYGAAE--VWDIAAMRVDAGLVLNKLSEVTCG 322
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BLAST of mRNA_Ecto-sp13_S_contig8475.19858.1 vs. uniprot
Match: A0A6H5KDE4_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDE4_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.400e-20
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:    2 THSWSKAYSFLTRWLHPMDVMYGAAEKQVWDIAAMRVDAGLVLDKLSEVTCG 157
            T SW KAYSFL+RWLHPMDVMYGAAE  VWDIAAMRVDAGLVLDKLSEVT G
Sbjct:  385 TQSWFKAYSFLSRWLHPMDVMYGAAE--VWDIAAMRVDAGLVLDKLSEVTRG 434
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8475.19858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJ22_ECTSI5.970e-2390.38SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KDE4_9PHAE2.400e-2088.46SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8475contigEcto-sp13_S_contig8475:5025..5505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size164
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464117.0289562-CDS-Ecto-sp13_S_contig8475:5025..51081681464117.0289562-CDS-Ecto-sp13_S_contig8475:5025..5108Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8475 5026..5108 -
1681464117.0423324-CDS-Ecto-sp13_S_contig8475:5426..55051681464117.0423324-CDS-Ecto-sp13_S_contig8475:5426..5505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8475 5427..5505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8475.19858.1prot_Ecto-sp13_S_contig8475.19858.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8475 5026..5505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8475.19858.1

>prot_Ecto-sp13_S_contig8475.19858.1 ID=prot_Ecto-sp13_S_contig8475.19858.1|Name=mRNA_Ecto-sp13_S_contig8475.19858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
NAQLVQGVLISDSLAAPDGRDVRCCGEAGVGHSRHARRCRSGFRQAKRGD
MWSG
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mRNA from alignment at Ecto-sp13_S_contig8475:5025..5505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8475.19858.1 ID=mRNA_Ecto-sp13_S_contig8475.19858.1|Name=mRNA_Ecto-sp13_S_contig8475.19858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=481bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8475:5025..5505- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGCACAGCTGGTCCAAGGCGTACTCATTTCTGACTCGTTGGCTGCACC
CGATGGACGTGATGTACGGTGCTGCGGAGGTGAGCAGACGTTCAGAGTGG
CCTTCAGTAAGTGAGAGGTTCCCCACTTTGACTGAAAATGTATGTTCCAA
TCGAAAAAGGGTGCTTCTGGGTACTTATTTTTTCTTCCGTGCCTTCCAAT
AACCACAAAAAAAAAACATCTTCGCACTGCAGTGATGCCATCCGCGAGTG
GTTGGGGACGTCTGCGGTCGGTCTGTTTCGAGGAAAGCCTCGGAACCGCC
CACGATGTACTGATACATGCACGGCTATTGAAGCAAAAAAAATTCTACGC
CCTTCGCTTCTGCTCACTGCCCGCCTGGCTCTCCACCCGGCAACAAGAAG
CAGGTGTGGGACATAGCCGCCATGCGCGTAGATGCCGGTCTGGTTTTAGA
CAAGCTAAGCGAGGTGACATGTGGTCAGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8475:5025..5505-

>mRNA_Ecto-sp13_S_contig8475.19858.1 ID=mRNA_Ecto-sp13_S_contig8475.19858.1|Name=mRNA_Ecto-sp13_S_contig8475.19858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8475:5025..5505- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGCACAGCTGGTCCAAGGCGTACTCATTTCTGACTCGTTGGCTGCACC
CGATGGACGTGATGTACGGTGCTGCGGAGAAGCAGGTGTGGGACATAGCC
GCCATGCGCGTAGATGCCGGTCTGGTTTTAGACAAGCTAAGCGAGGTGAC
ATGTGGTCAGGG
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