mRNA_Ecto-sp13_S_contig8470.19856.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8470.19856.1
Unique NamemRNA_Ecto-sp13_S_contig8470.19856.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8470.19856.1 vs. uniprot
Match: A0A6H5JZ49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ49_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 1.070e-61
Identity = 97/107 (90.65%), Postives = 98/107 (91.59%), Query Frame = 1
Query:    1 ISLRAPGHFGRNDSANAHVNGEENAGTLVIHIRSGDIFKPEKKGWHGMIWYGQPPLLFYEDVMSSAPWTQDVIISNANREEDQLNPTFGVLEDLASRGLLPLNVTTH 321
            ISLRAPG FGRNDSAN HVNGEEN GTLVIHIRSGDIFKPEK+GWHGMIWYGQPPLLFYEDVMSSAPW Q  IISNAN EE QLNPTFGVLEDLASRGLL LNVTTH
Sbjct:  103 ISLRAPGPFGRNDSANVHVNGEENPGTLVIHIRSGDIFKPEKEGWHGMIWYGQPPLLFYEDVMSSAPWVQVDIISNANGEEHQLNPTFGVLEDLASRGLLQLNVTTH 209          
BLAST of mRNA_Ecto-sp13_S_contig8470.19856.1 vs. uniprot
Match: A0A6H5L0Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z0_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 2.860e-47
Identity = 98/229 (42.79%), Postives = 137/229 (59.83%), Query Frame = 1
Query:    7 LRAPGHFGRNDSANAHVNGEENAGTLVIHIRSGDIFKPEKKGWHGMIWYGQPPLLFYEDVMSSAPWTQDVIISNANREEDQLNPTFGVLEDLASRGLLPLNVTTHLDRPFSRDLRDLMCAENLVVADSSLTKLLLHHSRAKRFLVPAACNETLLGSTNIASFCKYRPASQLFGIEWRTSSKARPAYAFLNSGSKEKAAYSPYNSNWKRSDSQMLEMIRSKEVQAIRRCC 693
            LRA       D  +A  + +    +LV+H+RSGDIF PE      + WYGQPPL FY  V+ S PW+   +++NA R + + NPTFGVL++L  +GLL      + DR    DLRD++CAEN+V+A SS+T+LL+ HSRAKRF +P +C     G   +   C YRP  +++GIEW+T+         LN        YS Y+  W  +D+Q LEMI S EV++I+RCC
Sbjct:  214 LRATSAVEGEDKRHAGSSPQGKGQSLVVHMRSGDIFSPELSD---IPWYGQPPLQFYLKVIGSRPWSNISVLTNA-RIQREFNPTFGVLQELDKQGLLGAPANFYADRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARG--GPFFVDRICLYRPDVEVYGIEWKTT---------LNE-------YSVYD-EWINTDAQRLEMITSDEVKSIQRCC 419          
BLAST of mRNA_Ecto-sp13_S_contig8470.19856.1 vs. uniprot
Match: A0A6H5L7B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B0_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.560e-40
Identity = 91/215 (42.33%), Postives = 130/215 (60.47%), Query Frame = 1
Query:   73 AGTLVIHIRSGDIFKPEKKGWHGMIW--YGQPPLLFYEDVMSSAPWTQDVIISNANREEDQLNPTFGVLEDLASRGLLPLNVTTHLDRPFSRDLRDLMCAENLVVADSSLTKLLLHHSRAKRFLVPAACNETLLGSTNIASF------CKYRPASQLFGIEWRTSSKARPAYAFLNSGSKEKAAYSPYNSNWKRSDSQMLEMIRSKEVQAIRRCC 693
            AG+LV+H+RSGDIFKP      G I+  YGQPPLL+Y  V++S PW +   +++   E+D LNP + V+E + S+GLL  NV  H DRP   DL+ ++CA++L ++ S+ T LLL HSRAKRF +P  C E  +G T +  F      C  R   +++GIEWRT+S+A                Y+ Y+S W  S S +LEM+ S  V+ ++RCC
Sbjct:  239 AGSLVVHVRSGDIFKP------GTIYHQYGQPPLLYYLAVIASKPWNKMSFVTSG--EDDLLNPAYRVIEGINSQGLLGTNVEMHKDRPLWEDLQAMLCADSLALSHSTFTNLLLAHSRAKRFFLPWGC-EPQVGDTTLNHFANATMICLQRSEVEVYGIEWRTTSEA----------------YTVYDS-WDPS-SNLLEMVVSDSVKGMQRCC 426          
BLAST of mRNA_Ecto-sp13_S_contig8470.19856.1 vs. uniprot
Match: D8LSV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV7_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.320e-37
Identity = 78/179 (43.58%), Postives = 111/179 (62.01%), Query Frame = 1
Query:  157 QPPLLFYEDVMSSAPWTQDVIISNANREEDQLNPTFGVLEDLASRGLLPLNVTTHLDRPFSRDLRDLMCAENLVVADSSLTKLLLHHSRAKRFLVPAACNETLLGSTNIASFCKYRPASQLFGIEWRTSSKARPAYAFLNSGSKEKAAYSPYNSNWKRSDSQMLEMIRSKEVQAIRRCC 693
            +PPL FY  V+ S PW+   +++NA R + + NPTFGVL++L  +GLL      + DR    DLRD++CAEN+V+A SS+T+LL+ HSRAKRF +P +C     G   +   C YRP  +++GIEW+T+         LN        YS Y+  W  +D+Q LEMI S EV++I+RCC
Sbjct:   39 KPPLQFYLKVIGSRPWSNISVLTNA-RIQREFNPTFGVLQELDKQGLLGAPANFYPDRDLYTDLRDMLCAENVVLAKSSITRLLVRHSRAKRFFLPTSCARG--GPFFVDRICLYRPDVEVYGIEWKTT---------LNE-------YSVYD-EWINTDAQRLEMITSDEVKSIQRCC 197          
BLAST of mRNA_Ecto-sp13_S_contig8470.19856.1 vs. uniprot
Match: D7FSJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ7_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.790e-34
Identity = 90/216 (41.67%), Postives = 122/216 (56.48%), Query Frame = 1
Query:   73 AGTLVIHIRSGDIFKPEKKGWHGMIWYGQPPLLFYEDVMSSAPWTQDVIISNANREEDQLNPTFGVLEDLASRGLLPLN---VTTHLDRPFSRDLRDLMCAENLVVADSSLTKLLLHHSRAKRFLVPAACNETLLGSTNIASF------CKYRPASQLFGIEWRTSSKARPAYAFLNSGSKEKAAYSPYNSNWKRSDSQMLEMIRSKEVQAIRRCC 693
            A +LV H RSGD+FKP +K +H    YGQPPLL+   V++S  W+    I+N   E   LNPTF V+E+L S+G+L  N   V T+  R    DL+ ++CA+ L VA S+LT LLL HSRAK F +P  C E  +G   I  F      C  RP  +++GIEWRT+S A                Y+ YN  W  S +Q LEMI S +++ ++ CC
Sbjct:  161 ARSLVFHFRSGDVFKP-RKDFHFQT-YGQPPLLYVLAVIASKKWSNLTFITNGEHER-LLNPTFRVIEELISQGILGTNGTIVETYKKRSLWEDLQAMLCADALSVAHSTLTNLLLAHSRAKMFFLPWGC-EPQIGDMMIPRFVSASMICLQRPEVEVYGIEWRTTSNA----------------YTVYN-KWDPSVNQ-LEMIVSDDLKGVQHCC 354          
BLAST of mRNA_Ecto-sp13_S_contig8470.19856.1 vs. uniprot
Match: D7FHC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC1_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 8.380e-33
Identity = 82/211 (38.86%), Postives = 121/211 (57.35%), Query Frame = 1
Query:   76 GTLVIHIRSGDIFKPEKKGWHGMIWYGQPPLLFYEDVMSSAPWTQDVIISNANREEDQLNPTFGVLEDLASRGLLPLNVTTHLDRPFSRDLRDLMCAENLVVADSSLTKLLLHHSRAKRFLVPAACNET-----LLGSTNIASFCKYRPASQLFGIEWRTSSKARPAYAFLNSGSKEKAAYSPYNSNWKRSDSQMLEMIRSKEVQAIRRCC 693
            G LV+HIRS DIF P+ + +H    YGQPPL ++  V++S  W    ++++    + QLNPT+ V+ +L  +G L  NV  H DR F  DL+ ++CA+NL ++ S+L+ LLL HSRAKRF +P  C        L    N +  C  RP  Q++GI+WRT+                K AY+ Y+S W   +S M+EM+ S  V+ ++RCC
Sbjct:  373 GHLVVHIRSQDIFSPDTR-FHQ---YGQPPLGYFLAVIASKKWDYLSVLTSG--PDKQLNPTYSVIAELNRQGYLGTNVGMHKDRSFWVDLQTMLCADNLALSHSTLSNLLLAHSRAKRFFLPWGCEPQPWTLKLNRFVNASMICLQRPEVQVYGIDWRTT----------------KDAYTVYDS-WD-PNSNMMEMVVSDAVKGVQRCC 559          
BLAST of mRNA_Ecto-sp13_S_contig8470.19856.1 vs. uniprot
Match: A0A6H5JNM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM4_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 2.710e-32
Identity = 81/211 (38.39%), Postives = 122/211 (57.82%), Query Frame = 1
Query:   76 GTLVIHIRSGDIFKPEKKGWHGMIWYGQPPLLFYEDVMSSAPWTQDVIISNANREEDQLNPTFGVLEDLASRGLLPLNVTTHLDRPFSRDLRDLMCAENLVVADSSLTKLLLHHSRAKRFLVPAACNET-----LLGSTNIASFCKYRPASQLFGIEWRTSSKARPAYAFLNSGSKEKAAYSPYNSNWKRSDSQMLEMIRSKEVQAIRRCC 693
            G LV+HIRS DIFKP+ + +H    YGQPPL ++  V++S  W    ++++    + QLNPT+ V+ +L  +G L  NV  H DR F  DL+ ++CA++L ++ S+L+ LLL HSRAKRF +P  C        L    N +  C  RP  +++GI+WRT+S A                Y+ Y+S W   +S M+EM+ S  V+ ++RCC
Sbjct:  248 GHLVVHIRSQDIFKPDTR-YHQ---YGQPPLGYFLAVIASKKWDYLSVLTSG--PDKQLNPTYSVIAELNRQGFLGTNVEMHKDRSFWEDLQAMLCADSLALSHSTLSNLLLAHSRAKRFFLPWGCEPQPWTLKLNRFVNASMICLQRP--EVYGIDWRTTSDA----------------YTVYDS-WD-PNSNMMEMVVSDAVKGVQRCC 432          
BLAST of mRNA_Ecto-sp13_S_contig8470.19856.1 vs. uniprot
Match: D7FRV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV8_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.970e-25
Identity = 73/216 (33.80%), Postives = 111/216 (51.39%), Query Frame = 1
Query:   73 AGTLVIHIRSGDIFKPEKKGWHGMIWYGQPPLLFYEDVMSSAPWTQDVIISNANREEDQLNPTFGVLEDLASRGLLPLNVTTHLDRPFSRDLRDLMCAENLVVADSSLTKLLLHHSRAKRFLVPAACN--------ETLLGST--NIASFCKYRPASQLFGIEWRTSSKARPAYAFLNSGSKEKAAYSPYNSNWKRSDSQMLEMIRSKEVQAIRRC 690
            AG+LV HIRSGDIF P+ +G H    +GQPPL +Y  V+++  W  +V    A  E+  LNPTF  LE +A  G+L  NV    +R    D+++++CA+ L  + SS++ L   HSRA  F VP  C         +  + +T  N       +  S++FG++WR +                 + YS Y  NW  S  Q+LEM   K ++ +++C
Sbjct:  114 AGSLVAHIRSGDIFNPDGEG-HRRQGFGQPPLQYYLRVLAAKDW-DNVTFLTAAWEDRALNPTFLTLEMMADAGVLGENVHLFNNRTLLTDMKEMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNGGFRRMKDVPVKATFDNTTLLLLEKRESEVFGVDWRQNG----------------SDYSVYK-NWLDSPHQLLEMTTYKGIKGLQKC 310          
BLAST of mRNA_Ecto-sp13_S_contig8470.19856.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 6.360e-21
Identity = 66/216 (30.56%), Postives = 101/216 (46.76%), Query Frame = 1
Query:   73 AGTLVIHIRSGDIFKPEKKGWHGMIWYGQPPLLFYEDVMSSAPWTQDVIISNANREEDQLNPTFGVLEDLASRGLLPLNVTTHLDRPFSRDLRDLMCAENLVVADSSLTKLLLHHSRAKRFLVPAACNE----------TLLGSTNIASFCKYRPASQLFGIEWRTSSKARPAYAFLNSGSKEKAAYSPYNSNWKRSDSQMLEMIRSKEVQAIRRC 690
            AG+LV+HIRSGDIF P ++G      +GQPPL +Y  V+    W  +V    A   +  +NPTF +LE +A  G L  NV    +R    D+R+++CA+ L  + SS++ L   HSRA  F VP  C                  N       +P ++++G  W  +S                  YS Y + W  +  Q+LEM     ++ +++C
Sbjct:  250 AGSLVVHIRSGDIFNPNEEG-RRRTEFGQPPLQYYLHVLGEKDW-DNVTFLTAAWNQKAINPTFSILEVMAKAGTLGDNVRLLKNRSLLEDVREMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNGGFRRMRRPPVKATFDNTTLLLLEKPDAEVYGTAWPGNSPK----------------YSVYQA-WHDTPEQLLEMATFGGIEGVQKC 446          
BLAST of mRNA_Ecto-sp13_S_contig8470.19856.1 vs. uniprot
Match: D7G2M2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.080e-15
Identity = 52/134 (38.81%), Postives = 69/134 (51.49%), Query Frame = 1
Query:   73 AGTLVIHIRSGDIF-KPEKKGWHGMIWYGQPPLLFYEDVMSSAPWTQ-DVIISNANREEDQLNPTFGVLEDLASRGLLPLNVTTHLDRPFSRDLRDLMCAEN-LVVADSSLTKLLLHHSRAKRFLVPAACNETL 465
            A TLVIH+RSGDIF  P   G      YGQPPL +Y   +    W + D++ +   ++ + +NP    LE + + G L  N+  H DR    D   +MC    LV A SSL+ LL HHS A R   P  C  +L
Sbjct:  316 ANTLVIHVRSGDIFVDPAAPG------YGQPPLQYYVRAIKHQKWDRVDIVTNGRTKKMNVMNPVIPALEVMFAEGELTGNIYFHKDRTMEEDFLSMMCVGGGLVTARSSLSLLLAHHSSASRLYFPRPCAGSL 443          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8470.19856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JZ49_9PHAE1.070e-6190.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0Z0_9PHAE2.860e-4742.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7B0_9PHAE3.560e-4042.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSV7_ECTSI1.320e-3743.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSJ7_ECTSI1.790e-3441.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHC1_ECTSI8.380e-3338.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNM4_9PHAE2.710e-3238.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRV8_ECTSI4.970e-2533.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRV9_ECTSI6.360e-2130.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2M2_ECTSI1.080e-1538.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8470contigEcto-sp13_S_contig8470:2..2050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size699
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_004740.2
Cds size699
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464116.8445098-CDS-Ecto-sp13_S_contig8470:1..1601681464116.8445098-CDS-Ecto-sp13_S_contig8470:1..160Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8470 2..160 +
1681464116.8569136-CDS-Ecto-sp13_S_contig8470:497..6621681464116.8569136-CDS-Ecto-sp13_S_contig8470:497..662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8470 498..662 +
1681464116.8670502-CDS-Ecto-sp13_S_contig8470:997..11891681464116.8670502-CDS-Ecto-sp13_S_contig8470:997..1189Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8470 998..1189 +
1681464116.8777227-CDS-Ecto-sp13_S_contig8470:1624..17051681464116.8777227-CDS-Ecto-sp13_S_contig8470:1624..1705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8470 1625..1705 +
1681464116.8888123-CDS-Ecto-sp13_S_contig8470:1948..20501681464116.8888123-CDS-Ecto-sp13_S_contig8470:1948..2050Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8470 1949..2050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8470.19856.1prot_Ecto-sp13_S_contig8470.19856.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8470 2..2050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8470.19856.1

>prot_Ecto-sp13_S_contig8470.19856.1 ID=prot_Ecto-sp13_S_contig8470.19856.1|Name=mRNA_Ecto-sp13_S_contig8470.19856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
ISLRAPGHFGRNDSANAHVNGEENAGTLVIHIRSGDIFKPEKKGWHGMIW
YGQPPLLFYEDVMSSAPWTQDVIISNANREEDQLNPTFGVLEDLASRGLL
PLNVTTHLDRPFSRDLRDLMCAENLVVADSSLTKLLLHHSRAKRFLVPAA
CNETLLGSTNIASFCKYRPASQLFGIEWRTSSKARPAYAFLNSGSKEKAA
YSPYNSNWKRSDSQMLEMIRSKEVQAIRRCCE*
back to top

mRNA from alignment at Ecto-sp13_S_contig8470:2..2050+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8470.19856.1 ID=mRNA_Ecto-sp13_S_contig8470.19856.1|Name=mRNA_Ecto-sp13_S_contig8470.19856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2049bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8470:2..2050+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTTCCCTGAGAGCACCAGGGCACTTCGGAAGGAACGACTCTGCAAACGC CCACGTCAACGGAGAAGAAAACGCAGGTACTCTCGTAATTCACATCCGTT CCGGAGACATTTTCAAGCCAGAGAAGAAAGGGTGGCACGGCATGATTTGG TACGGTCAGGTGCGTTACTCCATAGTGGGAACACCCGGTCGTTGCTGGCC TTTCGATCTGAAAGGGCTGTACTGCAAATCGTCTCCATCTCCAATGGAAC AACAGAGCCTCTTCGTCATCCTAATGCCGTTCCTTTTGATGCCCTGTAGG AAAACGACCGTGGAGCTGATCACCAGCCAATTGGTACCAGAACGGCGTTT TGAGGGAGCACTCTGGTTCCTGCCATAGCGGAATGAAGTACTCAAGAAAT CTACAGTATTTCATTCCCCATGCCTCACGCGTGAAAGTCAAGTTTTCCGT TGTATGCTTGTACGCACACGCATACGCTGTCGGGTGGACGAGACAGCCAC CTCTGCTGTTTTACGAGGACGTTATGTCGAGCGCGCCATGGACGCAAGAT GTCATCATCTCGAACGCCAATCGTGAAGAGGATCAGCTGAACCCCACGTT TGGGGTGCTAGAAGATCTGGCGAGCCGGGGGCTCTTACCACTGAATGTCA CTACACATCTGGTGGGTATGTAGGTCTGTGGTGCCACTGCTGTCTACTGT AGATCATTTTCCTCTTCAGAACTACGAACCAGACTGTCCCCAGTGTCTCG TTACACTGTCCAGTTTCCTTAAAACACCACAGGGTTGTGTGCGTTACTTT ATAGTCCTGCGACTAAACAGCCCCACACGATTGTAACCCCGTGATATGAC TGTCCACACCTTGAACTTAGCCGTAAGTCGTGGTTCACAACAGGTGAAAC TGTCTTGATTCTTCCGTGCCGATCTGTGACCCCGTCCGTGCTGTCGTGCC ACATCGTGCCCGTACTTGACCCCTGGGGACACCGATCCTACGATAGGATC GGCCGTTCTCTCGAGACCTGAGGGATCTCATGTGCGCGGAAAATCTGGTC GTGGCAGATTCAAGCCTGACCAAACTTCTGCTTCACCACTCTAGGGCGAA GCGTTTCCTTGTGCCGGCGGCGTGCAACGAAACTCTGTTGGGTTCAACAA ACATAGCTAGTTTCTGCAAGTACAGGCCAGCTTCCCAGGTACAGTAGGCG TTCATACGGGGTGCGGCGTGCTTCTTCTTCTGTACTGTGCACGATACCAA GTGTATATCAAATGGTTCCCGTAGGCGTCATGCTCGTGCTGCCGTCAACA GCTCCAACAATCCAAACTGCCCTTTGTTTTTTCGTGAAACAAGTTTGTAC AGAACCTCTTAATCTGTGTTCTGCGATTCAAGCTTTCGACCTTTCGGCAG ACTGGGTACGCAGTTCGCTTGCCTCAAGTTCAGTGAAAGGACACAGCGGT GCATTGAGATTCAGATCCATGACCTGCATAAACTGTAACATATCTGCGTA GAGCGAACAATTTTTGCAACCGTCCTGCCTTCATTTGTCACGACGCCCCA CCCTATTCTCTTCGCCTCTGTCTTGGGTACTTTGTGCGGCTTGTTTTGAC CGTCATCGGACCTGCCTGCATAGCTGTTCGGGATTGAATGGAGAACAAGT TCAAAGGCAAGACCAGCATATGCTTTTCTCAACTCGGGGAGCAAGGAGAA GGCTGTGTCGTTACTGCAAGGGTTCTATACGTACGCTTTGGGTGTTGAGC GATCCAAGCGAAATTTCACTTACTCTGTGCATGGAAGACTCCAAGCCCCC TACTGCGGTAGCAATCTCTATGGTGTAACCTCGAAAAAAACCTTTTTATC CACCTCCGTTGATGCTAGCGGTAAGCCTCATCCACTCTGTGTGACTTCTT ACCATTCGTTACCCGCATGCGCTTGCGACATGTGACATGGACGACAGGCA TATTCCCCCTACAACAGTAATTGGAAGCGGAGCGATTCGCAAATGCTGGA AATGATCCGATCGAAGGAGGTTCAAGCCATTCGACGGTGCTGCGAGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8470:2..2050+

>mRNA_Ecto-sp13_S_contig8470.19856.1 ID=mRNA_Ecto-sp13_S_contig8470.19856.1|Name=mRNA_Ecto-sp13_S_contig8470.19856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8470:2..2050+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTTCCCTGAGAGCACCAGGGCACTTCGGAAGGAACGACTCTGCAAACGC
CCACGTCAACGGAGAAGAAAACGCAGGTACTCTCGTAATTCACATCCGTT
CCGGAGACATTTTCAAGCCAGAGAAGAAAGGGTGGCACGGCATGATTTGG
TACGGTCAGCCACCTCTGCTGTTTTACGAGGACGTTATGTCGAGCGCGCC
ATGGACGCAAGATGTCATCATCTCGAACGCCAATCGTGAAGAGGATCAGC
TGAACCCCACGTTTGGGGTGCTAGAAGATCTGGCGAGCCGGGGGCTCTTA
CCACTGAATGTCACTACACATCTGGATCGGCCGTTCTCTCGAGACCTGAG
GGATCTCATGTGCGCGGAAAATCTGGTCGTGGCAGATTCAAGCCTGACCA
AACTTCTGCTTCACCACTCTAGGGCGAAGCGTTTCCTTGTGCCGGCGGCG
TGCAACGAAACTCTGTTGGGTTCAACAAACATAGCTAGTTTCTGCAAGTA
CAGGCCAGCTTCCCAGCTGTTCGGGATTGAATGGAGAACAAGTTCAAAGG
CAAGACCAGCATATGCTTTTCTCAACTCGGGGAGCAAGGAGAAGGCTGCA
TATTCCCCCTACAACAGTAATTGGAAGCGGAGCGATTCGCAAATGCTGGA
AATGATCCGATCGAAGGAGGTTCAAGCCATTCGACGGTGCTGCGAGTGA
back to top