mRNA_Ecto-sp13_S_contig8469.19851.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8469.19851.1 vs. uniprot
Match: D7FJP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP5_ECTSI) HSP 1 Score: 196 bits (498), Expect = 1.540e-59 Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 1
Query: 1 MASSAGDDATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKKDGISVVIEVLSFEVDINMDEQARKDGASARHFFDDLAAANGATSSACDFCGDLSD 306
MASSAGDDATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASK+DGIS+VIEVLSFE DINMDEQARKDGASARHFFDDLAAANGATSSACDFCGDLSD
Sbjct: 1 MASSAGDDATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKEDGISIVIEVLSFEADINMDEQARKDGASARHFFDDLAAANGATSSACDFCGDLSD 102
BLAST of mRNA_Ecto-sp13_S_contig8469.19851.1 vs. uniprot
Match: A0A1Z5KBW9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBW9_FISSO) HSP 1 Score: 73.6 bits (179), Expect = 6.160e-13 Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 31 LRKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKKDGISVVIEVLSFEVDINMDEQARKDGASARHFFDDLAAANG 264
LR+LFGG++EC +P + DVSD+RQVPDHQE + + G +VIE+L ++ DIN D+QA A +FF DLA +NG
Sbjct: 21 LRQLFGGSIECRIPEGWRDVSDIRQVPDHQECWQDDQ-GKLLVIEILDYQADIN-DDQA------AHYFFQDLAESNG 90
BLAST of mRNA_Ecto-sp13_S_contig8469.19851.1 vs. uniprot
Match: A0A5D6XW54_9STRA (FERM domain-containing protein n=2 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW54_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 7.850e-13 Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 28 TLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKKDGISVVIEVLSFEVDINMDEQARKDGASARHFFDDLAAANG 264
T R+LFGGA+ C +P ++ DVSD RQVPD+QEVFA + V++E+L E + +D SAR FF+++A+ANG
Sbjct: 3 TTRELFGGAISCSIPESFADVSDFRQVPDNQEVFADAQSDQCVIVELLQREAGV-------RDEDSARFFFNEVASANG 74
BLAST of mRNA_Ecto-sp13_S_contig8469.19851.1 vs. uniprot
Match: A0A1Z5JLS6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLS6_FISSO) HSP 1 Score: 72.4 bits (176), Expect = 1.200e-12 Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 31 LRKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKKDGISVVIEVLSFEVDINMDEQARKDGASARHFFDDLAAANG 264
LR+LFGG++EC +P + DVSD+RQVPDHQE + + G +VIE+L ++ D+ D+QA AR+FF DLA +NG
Sbjct: 3 LRQLFGGSIECKVPEGWRDVSDIRQVPDHQECWQDDQ-GNLLVIEILDYQTDVT-DDQA------ARYFFQDLAESNG 72
BLAST of mRNA_Ecto-sp13_S_contig8469.19851.1 vs. uniprot
Match: A0A7S3MHE7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHE7_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 3.480e-12 Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 25 ATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKKDGISVVIEVLSFEVDINMDEQARKDGASA-RHFFDDLAAANGA 267
A+ R LFGGA+E L A Y+DVSD+RQVPDHQEVF K + +S+++E+L +E D+ +D A RH+++DL N A
Sbjct: 15 ASKRDLFGGAIEANLGADYLDVSDVRQVPDHQEVFIHKDNEVSIIVELLQYENDL-------EDSIGAVRHYYNDLVEVNEA 89
BLAST of mRNA_Ecto-sp13_S_contig8469.19851.1 vs. uniprot
Match: A0A2R5GLU9_9STRA (Ran guanine nucleotide release factor n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLU9_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 3.590e-12 Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 34 RKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKKDGISVVIEVLSFEVDINMDEQARKDGASARHFFDDLAAANGATSSACDF 288
R+LFGGA+ LPAA+ DVS +R+VPDHQEVFA + S+++EVL + + + ++FF+DLA ANG+ ++ ++
Sbjct: 32 RELFGGAITASLPAAFADVSTVREVPDHQEVFADQNTDRSIIVEVLELTA-------SESNETAGKYFFEDLAGANGSEATVIEY 109
BLAST of mRNA_Ecto-sp13_S_contig8469.19851.1 vs. uniprot
Match: A0A836B217_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B217_9CHLO) HSP 1 Score: 70.9 bits (172), Expect = 5.730e-12 Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 1
Query: 7 SSAGDDATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKKDGISVVIEVLSFEVDINMDEQARKDGASARHFFDDLAAANGATSSACDFCGDL 300
S A R+L+GGA+E LPA +DVSD+R VPDHQEV+A + +++ E++ + + DG + RH F+D A N A +SA D L
Sbjct: 4 SGASQCTETRELWGGAVEAQLPARMLDVSDMRPVPDHQEVWADTRTDQAIIFEIVEHDTSV-------PDGEAGRHMFEDAAVGNEAVASAIDSVASL 94
BLAST of mRNA_Ecto-sp13_S_contig8469.19851.1 vs. uniprot
Match: G7E1G7_MIXOS (Uncharacterized protein n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E1G7_MIXOS) HSP 1 Score: 70.1 bits (170), Expect = 9.830e-12 Identity = 45/94 (47.87%), Postives = 54/94 (57.45%), Query Frame = 1
Query: 34 RKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKKDGISVVIEVLSFEVDINMDEQARKDGASARHFFDDLAAANGATSSACDFCGDLSDRQD 315
R L+G A+ LPA Y+D SDLRQVPD QEVF + ISV++E+L VD+ DE+A RH FD LA N A SS LS QD
Sbjct: 4 RSLWGEAVIATLPAEYIDASDLRQVPDTQEVFLAPDSDISVILEILQ-AVDLKQDEEA------IRHIFDSLAHDNDAFSSKVTDVTALSTSQD 90
BLAST of mRNA_Ecto-sp13_S_contig8469.19851.1 vs. uniprot
Match: A0A5A9P6Y6_9TELE (Ran guanine nucleotide release factor n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9P6Y6_9TELE) HSP 1 Score: 68.9 bits (167), Expect = 2.490e-11 Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 34 RKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKKDGISVVIEVLSFEVDINMDEQARKDGASARHFFDDLAAANGATSS 276
R LFGGA ++P D+S+LRQ+PD+QEVFA+ + S+VIE+L ++ + +D +AR+ FDD+A+ NGA S
Sbjct: 3 RPLFGGAFSVVIPPNAQDISELRQIPDNQEVFANSQTDQSIVIELLEYQSQV-------QDAEAARYHFDDVASTNGAVES 76
BLAST of mRNA_Ecto-sp13_S_contig8469.19851.1 vs. uniprot
Match: A0A8K1FKZ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKZ4_PYTOL) HSP 1 Score: 68.6 bits (166), Expect = 3.940e-11 Identity = 31/76 (40.79%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 37 KLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKKDGISVVIEVLSFEVDINMDEQARKDGASARHFFDDLAAANG 264
+LFGGA+ C++P + DVS RQVPD+QEVFA+ + +++IE+L +E ++ D S +FF+++A +NG
Sbjct: 5 ELFGGALSCVIPQGFADVSSFRQVPDNQEVFANAQTDQAIIIELLEYEATVS-------DAESGTYFFNEIATSNG 73 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8469.19851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8469.19851.1 >prot_Ecto-sp13_S_contig8469.19851.1 ID=prot_Ecto-sp13_S_contig8469.19851.1|Name=mRNA_Ecto-sp13_S_contig8469.19851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp MASSAGDDATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKKDGIback to top mRNA from alignment at Ecto-sp13_S_contig8469:4758..6857+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8469.19851.1 ID=mRNA_Ecto-sp13_S_contig8469.19851.1|Name=mRNA_Ecto-sp13_S_contig8469.19851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2100bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8469:4758..6857+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8469:4758..6857+ >mRNA_Ecto-sp13_S_contig8469.19851.1 ID=mRNA_Ecto-sp13_S_contig8469.19851.1|Name=mRNA_Ecto-sp13_S_contig8469.19851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8469:4758..6857+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |