mRNA_Ecto-sp13_S_contig8464.19847.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8464.19847.1
Unique NamemRNA_Ecto-sp13_S_contig8464.19847.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8464.19847.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 9.750e-12
Identity = 57/155 (36.77%), Postives = 72/155 (46.45%), Query Frame = 1 
Query:    4 KRWYASTLELQLVGMRLNWLQLLSLAICEMSVGVQTLDMRIDGEKPLSLLSPTTSHATANDRSREVCT*SRVP---AYVVT-----------------------RLRGYCSAERLATGPCIQRSKQLEIDLDPAANMASLPASLLHLSLAFKFNQ 390
            KRWY STLELQLV          SL +C     VQTL +R+  + P SL  P+ +H T N+RS +VC  SRVP   A+ +T                       R   + SA  L +    QR K++  + D   N AS PASL  LS    FNQ
Sbjct:   26 KRWYVSTLELQLV----------SLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQ 170
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BLAST of mRNA_Ecto-sp13_S_contig8464.19847.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.180e-11
Identity = 58/156 (37.18%), Postives = 70/156 (44.87%), Query Frame = 1 
Query:    4 KRWYASTLELQLVGMRLNWLQLLSLAICEMSVGVQTLDMRIDGEKPLSLLSPTTSHATANDRSREVCT*SRVPAYVVT--------------------------RLRGYCSAERLATGPCIQRS-KQLEIDLDPAANMASLPASLLHLSLAFKFNQ 390
            KRWYASTLELQLV          SL  C     V TL +R+D + P SL SP  SHAT   RSRE C  +RVPA   +                          R+ G  S   L +   +Q   K+L  D D  A+ AS PASL  L    +F+Q
Sbjct:   34 KRWYASTLELQLV----------SLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDSDMPASTASWPASLPQLLFGDRFDQ 179
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BLAST of mRNA_Ecto-sp13_S_contig8464.19847.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.110e-8
Identity = 56/158 (35.44%), Postives = 64/158 (40.51%), Query Frame = 1 
Query:    1 AKRWYASTLELQLVGMRLNWLQLLSLAICEMSVGVQTLDMRIDGEKPLSLLSPTTSHATANDRSREVCT*SRVPAYVV-----------------TRLRGYCSAERLATGPC----------IQRSKQLEIDLDPAANMASLPASLLHLSLAFKFNQP 393
            AKRWY STLELQLV          SL  C       + D++I  + P SL SP  SH T   RSRE C  SRVPA                    T L    S  R  TGP            Q+  +L    + + N  S PA L  LS    FNQP
Sbjct:   45 AKRWYVSTLELQLV----------SLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELH-QVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQP 191
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BLAST of mRNA_Ecto-sp13_S_contig8464.19847.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.000e-5
Identity = 33/66 (50.00%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:    4 KRWYASTLELQLVGMRLNWLQLLSLAICEMSVGVQTLDMRIDGEKPLSLLSPTTSHATANDRSREV 201
            KRWYASTLELQLV          SL  C     V TL +R+D   P SL SP T+  TA+ RSR+V
Sbjct:   58 KRWYASTLELQLV----------SLEFCGACRHVPTLHVRVDRRTPRSLWSPRTTPITAHKRSRKV 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8464.19847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KNI6_9PHAE9.750e-1236.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV1_9PHAE5.180e-1137.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8K9_9PHAE2.110e-835.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0Z9_ECTSI2.000e-550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8464contigEcto-sp13_S_contig8464:2238..2680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size443
Hectar predicted targeting categorysignal peptide
Exons1
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464115.9027767-UTR-Ecto-sp13_S_contig8464:2237..22821681464115.9027767-UTR-Ecto-sp13_S_contig8464:2237..2282Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8464 2238..2282 +
1681464115.9273543-UTR-Ecto-sp13_S_contig8464:2447..26801681464115.9273543-UTR-Ecto-sp13_S_contig8464:2447..2680Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8464 2448..2680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464115.9155471-CDS-Ecto-sp13_S_contig8464:2282..24471681464115.9155471-CDS-Ecto-sp13_S_contig8464:2282..2447Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8464 2283..2447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8464.19847.1prot_Ecto-sp13_S_contig8464.19847.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8464 2283..2447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8464.19847.1

>prot_Ecto-sp13_S_contig8464.19847.1 ID=prot_Ecto-sp13_S_contig8464.19847.1|Name=mRNA_Ecto-sp13_S_contig8464.19847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MRLNWLQLLSLAICEMSVGVQTLDMRIDGEKPLSLLSPTTSHATANDRSR
EVCT*
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mRNA from alignment at Ecto-sp13_S_contig8464:2238..2680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8464.19847.1 ID=mRNA_Ecto-sp13_S_contig8464.19847.1|Name=mRNA_Ecto-sp13_S_contig8464.19847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=443bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8464:2238..2680+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAAGCGTTGGTATGCGTCTACACTGGAGCTTCAACTTGTTGGTATGCG
TCTAAACTGGCTACAACTTTTGTCCCTGGCAATTTGTGAGATGTCCGTAG
GGGTCCAGACCTTGGACATGCGCATAGATGGAGAGAAGCCTCTCAGCTTG
TTGTCACCTACCACATCACACGCCACGGCCAACGACCGCAGTCGAGAGGT
TTGCACCTGAAGTCGCGTACCGGCTTACGTCGTGACTCGGTTACGGGGAT
ATTGTTCTGCAGAGAGGCTAGCAACGGGCCCTTGTATTCAAAGGTCGAAA
CAGCTGGAAATTGATTTAGATCCGGCCGCGAACATGGCGTCGTTGCCGGC
CTCCCTTCTCCACCTATCGCTTGCTTTTAAGTTCAACCAGCCATCGTCGA
AAAACTCATCCTGCCACCGCAGAGCTGCGGGGAGGTCCGGCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8464:2238..2680+

>mRNA_Ecto-sp13_S_contig8464.19847.1 ID=mRNA_Ecto-sp13_S_contig8464.19847.1|Name=mRNA_Ecto-sp13_S_contig8464.19847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8464:2238..2680+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTCTAAACTGGCTACAACTTTTGTCCCTGGCAATTTGTGAGATGTC
CGTAGGGGTCCAGACCTTGGACATGCGCATAGATGGAGAGAAGCCTCTCA
GCTTGTTGTCACCTACCACATCACACGCCACGGCCAACGACCGCAGTCGA
GAGGTTTGCACCTGA
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