prot_Ecto-sp13_S_contig12399.1984.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12399.1984.1
Unique Nameprot_Ecto-sp13_S_contig12399.1984.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length305
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12399.1984.1 vs. uniprot
Match: A0A6H5JAL8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAL8_9PHAE)

HSP 1 Score: 476 bits (1225), Expect = 2.630e-155
Identity = 269/285 (94.39%), Postives = 275/285 (96.49%), Query Frame = 0 
Query:    1 GSPPRKTLSAALSLMEEAQQAGVEVDAATTDAVLTALGKAKGKDEQLLALFLQAEERGLRLKRQSYAWAVVAYKRCGKAKEALDSALSFSERGIVMTVVGWNAAMHAASVTGEPGKALELLEEAKSKGVRPTEVTYATAIGACAKATSNVKVNAQKAVLXXXXXXXXXXXXYPPAHQAALTALAASEGHRAAMDLLAKMRANGTRLTSASYSPALKSAGQVGDWRNAIALIDVMTRASVTDKDAGPDVVCFNYAMTACAKAGECELAHRVLSRIQACGLAANLVS 285
            GSPPRKTLSAALSLMEEAQQAGVEVDAATTDA+LTALGKAKGKDEQLLALF QAEERGLRLKRQSYAWAVVAYKRCGKAKEALDSALSFSERGIVMTVVGWNAAMHAASVTGEPGKALELLEEAKSKGV+PTEVTYATAIGACAKAT+NVK NA+    XXXXXXXXXXXX  PAHQAALTALAASEGHRAAMDLLAKMRANGTRLTSASYSP LKSA QVGDWRNAIALIDVMTRASVTDKDAGPDVVCFNYAM+ACAKAGECELAHRV+SRIQACGLAANLVS
Sbjct:  398 GSPPRKTLSAALSLMEEAQQAGVEVDAATTDAILTALGKAKGKDEQLLALFRQAEERGLRLKRQSYAWAVVAYKRCGKAKEALDSALSFSERGIVMTVVGWNAAMHAASVTGEPGKALELLEEAKSKGVKPTEVTYATAIGACAKATTNVKANARXXXXXXXXXXXXXXXXXXPAHQAALTALAASEGHRAAMDLLAKMRANGTRLTSASYSPVLKSAAQVGDWRNAIALIDVMTRASVTDKDAGPDVVCFNYAMSACAKAGECELAHRVMSRIQACGLAANLVS 682
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12399.1984.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAL8_9PHAE2.630e-15594.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 304..304
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 162..304
coord: 8..171
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 113..240
e-value: 2.2E-8
score: 33.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 151..304
e-value: 7.6E-26
score: 93.2
coord: 5..150
e-value: 9.7E-25
score: 89.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 284..303
e-value: 0.064
score: 13.5
coord: 249..279
e-value: 0.1
score: 12.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 101..133
e-value: 0.0032
score: 15.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 172..206
score: 5.338
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 207..241
score: 6.588
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 62..96
score: 5.711
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 247..281
score: 8.55
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 97..131
score: 9.635
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 132..171
score: 7.574
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 26..61
score: 7.235
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 282..304
score: 7.026

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12399contigEcto-sp13_S_contig12399:507..4657 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12399.1984.1mRNA_Ecto-sp13_S_contig12399.1984.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12399 507..4657 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12399.1984.1 ID=prot_Ecto-sp13_S_contig12399.1984.1|Name=mRNA_Ecto-sp13_S_contig12399.1984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=305bp
GSPPRKTLSAALSLMEEAQQAGVEVDAATTDAVLTALGKAKGKDEQLLAL
FLQAEERGLRLKRQSYAWAVVAYKRCGKAKEALDSALSFSERGIVMTVVG
WNAAMHAASVTGEPGKALELLEEAKSKGVRPTEVTYATAIGACAKATSNV
KVNAQKAVLLLEEMEAAGLEPYPPAHQAALTALAASEGHRAAMDLLAKMR
ANGTRLTSASYSPALKSAGQVGDWRNAIALIDVMTRASVTDKDAGPDVVC
FNYAMTACAKAGECELAHRVLSRIQACGLAANLVSYGICMDAYAKAGLWE
KVKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat