mRNA_Ecto-sp13_S_contig8462.19845.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8462.19845.1
Unique NamemRNA_Ecto-sp13_S_contig8462.19845.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8462.19845.1 vs. uniprot
Match: A0A6H5JH06_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH06_9PHAE)

HSP 1 Score: 464 bits (1195), Expect = 2.640e-143
Identity = 437/606 (72.11%), Postives = 446/606 (73.60%), Query Frame = 1 
Query:  283 PAVSPDSESKGGASEVGGSGTAFLPQSPRSSPDAGERSGYAAGTRVMVDARGPESEKAGEAVPVPTAFRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQVSPRSPTTPALPEAIGASAATAXXXXXXXXXXXXXXXXXXXLKKNDESMTTPATAISPTRSNADPRPRSPRQGASADPRVAAKAKQGSTSCLSSPXXXXXXXXXXXXXXXXXXXXPGTVKVEPPASXXSTAASPTAA-AGVKPRDPRRPKPPPYPRPEKPRQQSPIPLFKVEETNVGPVVTALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PXXXXXLDPRKRERGIATAVAGAVSGGGEGXXXXXXXXXXAVVESENGGSRKRSRIEYGEAGADQNQINNISNNVLGTENGIGGGVFPPGLPATGHPQAQIVPPGRVGASGVGFVPHQAGVVPDNGGAPVNGPGGMGMGSWTGGGVPQGGVQHPPPAEMTVRSPQAGGLVTQSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQTQLSPVAVQQQPPAAGWLPSGGPGWQEESAGGITDEIEEG 2091
            PAVSPDS+SKGGAS     GT  LP+SPRSSPDAGERSGYAAG+RVMVDARGPESEKAGEAVPVPT FRP  XX                                            RQVSPRSPTTPALPEA+GASAA  XXXXX    XXXXXXXX  LKKNDESMTTPATA SPT SNADPRPRSPRQGA ADPRVA+KAKQ STSCLSSP    XXXXXXXXXXXXXXXX           XX          AG+KPRDPRRPK       EK             ETNV PV     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    XXXX  P     LDPRKRERGIATAV          XXXXXXXXXXAVV     GSRKRSR EYGE GADQNQINN SNNVLG ENGIGG V PPGLPATGHPQAQIV  G VG  G+GFV HQAGVVPDNGGAPVNGPGGMGMGSWTGGGVPQGGVQHPPPA MTV +PQAGGLVTQSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LQT LSPVAVQQQPPAAGWLPSGGPGWQEESAGG+ DEIEEG
Sbjct:  883 PAVSPDSDSKGGAS-----GTVLLPRSPRSSPDAGERSGYAAGSRVMVDARGPESEKAGEAVPVPTTFRPPPXXPRLASPA-------------------------------------RQVSPRSPTTPALPEAVGASAAXXXXXXXPQLQXXXXXXXXSPLKKNDESMTTPATATSPTTSNADPRPRSPRQGALADPRVASKAKQASTSCLSSPPIGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGIKPRDPRRPKXXXXXXXEKXXXXXXXXXXXXXETNVEPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARSXXXXQAPRSPPPLDPRKRERGIATAVX---------XXXXXXXXXXAVVA----GSRKRSRTEYGEGGADQNQINNSSNNVLGAENGIGGSVLPPGLPATGHPQAQIVLSGLVGTGGMGFVTHQAGVVPDNGGAPVNGPGGMGMGSWTGGGVPQGGVQHPPPAGMTVLNPQAGGLVTQSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LQTHLSPVAVQQQPPAAGWLPSGGPGWQEESAGGMPDEIEEG 1432
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BLAST of mRNA_Ecto-sp13_S_contig8462.19845.1 vs. uniprot
Match: D7G8X2_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X2_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 5.410e-81
Identity = 272/622 (43.73%), Postives = 279/622 (44.86%), Query Frame = 1 
Query:  226 LRTDGAVMLPFNGAAAAAAPAVSPDSESKGGASEVGGSGTAFLPQSPRSSPDAGERSGYAAGTRVMVDARGPESEKAGEAVPVPTAFRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQVSPRSPTTPALPEAIGASAATAXXXXXXXXXXXXXXXXXXXLKKNDESMTTPATAISPTRSNADPRPRSPRQGASADPRVAAKAKQGSTSCLSSPXXXXXXXXXXXXXXXXXXXXPGTVKVEPPASXXSTAASPTAAAGVKPRDPRRPKPPPYPRPEKPRQQSPIPLFKVEETNVGPVVTALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXLDPRKRERGIATAVAGAVSGGGEGXXXXXXXXXXAVVESENGGSRKRSRIEYGEAGADQNQINNISNNVLGTENGIGGGVFPPGLPATGHPQAQIVPPGRVGASGVGFVPHQAGVVPDNGGAPVNGPGGMGMGSWTGGGVPQGGVQHPPPAEMTVRSPQAGGLVTQSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQTQLSPVAVQQQPPAAGWLPSGGPGWQEESAGGITDEIEEG 2091
            LRTD AVMLPFNGAAAAAAP VSPDSESKG ASEVGGSGT FLP+SPRSSP AGERSGYAAGTRVMVDARGPESEK                                                                                                                                                                                      ++ PP  XX                PR P P                                                                                      LDPRKRERGIATAVAGA  GGGEG          AVVESE GGSRKRSR EYGE G DQNQINN S+NVLG ENG+GGGV PPGLPATGHPQAQIVPPG VG  G+GFVPHQAGVVPDN  APVNGPGGMGMGSWTGGGVPQGGVQHP                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LQ QLSPVAVQQQPPAAGWLPS  PGWQEESAGG+ DEIEEG
Sbjct:  867 LRTDRAVMLPFNGAAAAAAPTVSPDSESKGAASEVGGSGTVFLPRSPRSSPAAGERSGYAAGTRVMVDARGPESEK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RMSPPXXXXXXXXXXXXXXXXXXEAPRSPPP--------------------------------------------------------------------------------------LDPRKRERGIATAVAGAGIGGGEGAAVVAGGGANAVVESEIGGSRKRSRTEYGEGGTDQNQINNSSSNVLGAENGVGGGVLPPGLPATGHPQAQIVPPGLVGTGGLGFVPHQAGVVPDNASAPVNGPGGMGMGSWTGGGVPQGGVQHPXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALQHQLSPVAVQQQPPAAGWLPSRAPGWQEESAGGMPDEIEEG 1219
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8462.19845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH06_9PHAE2.640e-14372.11WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G8X2_ECTSI5.410e-8143.73WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8462contigEcto-sp13_S_contig8462:4688..6862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score294.7
Seed ortholog evalue1.2e-76
Seed eggNOG ortholog2880.D7G8X2
Model size2175
KEGG koko:K10706
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
EggNOG OGsCOG1112@1,KOG1801@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-15_004570.1
Cds size2175
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464115.780905-CDS-Ecto-sp13_S_contig8462:4687..68621681464115.780905-CDS-Ecto-sp13_S_contig8462:4687..6862Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8462 4688..6862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8462.19845.1prot_Ecto-sp13_S_contig8462.19845.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8462 4688..6862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8462.19845.1

>prot_Ecto-sp13_S_contig8462.19845.1 ID=prot_Ecto-sp13_S_contig8462.19845.1|Name=mRNA_Ecto-sp13_S_contig8462.19845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=725bp
SLPPAAEAHGGGGGGVLTTALPLTSSGGGSLLLPLQGSTPGAAVVSGGVG
DIATAGTQQQQQQQQQQQQQPLPPPLRTDGAVMLPFNGAAAAAAPAVSPD
SESKGGASEVGGSGTAFLPQSPRSSPDAGERSGYAAGTRVMVDARGPESE
KAGEAVPVPTAFRPPPPPPRLASPRSGPEAVPQQQQQQQQQQRQQQEQHG
GQQQRRPPPPPPRQVSPRSPTTPALPEAIGASAATAAASATPQLQPPPQP
PAKPPLKKNDESMTTPATAISPTRSNADPRPRSPRQGASADPRVAAKAKQ
GSTSCLSSPPNGKKKPKPPPPRKKPASSSPGTVKVEPPASPPSTAASPTA
AAGVKPRDPRRPKPPPYPRPEKPRQQSPIPLFKVEETNVGPVVTALPPPP
PPPPPPPPLPPPPPVLSEQRMSPPPVVPAVVAATVARSSPPPQAPRSPPP
LDPRKRERGIATAVAGAVSGGGEGAAVVAGGGANAVVESENGGSRKRSRI
EYGEAGADQNQINNISNNVLGTENGIGGGVFPPGLPATGHPQAQIVPPGR
VGASGVGFVPHQAGVVPDNGGAPVNGPGGMGMGSWTGGGVPQGGVQHPPP
AEMTVRSPQAGGLVTQSPPRPPPPPPPPPPPLPAAIVHGHPAPPGVIMMQ
QGGGALQTQLSPVAVQQQPPAAGWLPSGGPGWQEESAGGITDEIEEGVEE
GGEEEEKEEEEGENDSEEEGEIVL*
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mRNA from alignment at Ecto-sp13_S_contig8462:4688..6862-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8462.19845.1 ID=mRNA_Ecto-sp13_S_contig8462.19845.1|Name=mRNA_Ecto-sp13_S_contig8462.19845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2175bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8462:4688..6862- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCTGCCGCCGGCTGCGGAAGCTCATGGCGGCGGTGGGGGAGGTGTTCT
GACGACGGCGCTTCCTCTCACGTCGTCCGGTGGAGGCTCGCTGCTGCTCC
CGCTGCAAGGAAGCACGCCTGGAGCTGCCGTCGTCAGCGGTGGTGTAGGT
GACATAGCGACGGCGGGCACGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCCTCTCCCACCACCGCTGAGGACGGACGGTGCTGTCATGC
TCCCGTTCAATGGGGCGGCGGCAGCCGCGGCCCCGGCCGTGTCGCCAGAC
TCAGAGAGCAAAGGGGGGGCCTCGGAGGTAGGAGGATCGGGGACCGCGTT
TTTGCCCCAATCTCCGCGGAGTTCTCCTGACGCTGGGGAGAGGAGTGGAT
ACGCAGCCGGGACGAGGGTTATGGTGGATGCTCGTGGCCCCGAATCGGAG
AAGGCTGGAGAAGCAGTGCCAGTGCCAACGGCGTTTCGTCCACCGCCACC
GCCCCCGAGGTTGGCGTCGCCAAGATCTGGACCTGAAGCAGTACCACAAC
AGCAACAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAAGAGCAACATGGC
GGACAGCAGCAGCGACGCCCGCCTCCACCACCGCCACGGCAAGTATCACC
GCGGTCGCCGACAACCCCGGCGCTTCCGGAAGCTATAGGAGCATCGGCAG
CAACAGCAGCAGCCTCGGCAACGCCGCAACTGCAGCCCCCGCCCCAGCCG
CCCGCTAAGCCGCCTCTTAAAAAAAACGACGAATCGATGACAACACCGGC
GACGGCGATATCTCCGACAAGGAGCAACGCTGATCCCCGTCCACGCAGCC
CTCGACAGGGCGCATCGGCCGATCCACGAGTCGCTGCTAAGGCCAAGCAG
GGCTCAACCTCCTGCCTCTCTTCCCCCCCCAATGGAAAGAAGAAGCCCAA
ACCTCCTCCCCCCCGAAAAAAACCGGCGAGCTCCTCCCCCGGCACCGTTA
AGGTCGAACCTCCGGCGTCTCCCCCATCTACGGCAGCGTCGCCCACCGCC
GCCGCCGGTGTCAAACCGCGTGACCCCCGACGACCGAAGCCGCCGCCGTA
CCCCCGCCCCGAAAAGCCCAGGCAGCAGTCGCCGATACCGCTATTCAAGG
TCGAGGAAACGAATGTAGGGCCTGTGGTCACCGCGTTGCCCCCCCCCCCC
CCCCCGCCGCCACCACCACCGCCACTGCCGCCGCCGCCGCCGGTGCTGTC
CGAGCAGCGTATGTCACCGCCACCGGTAGTGCCTGCGGTCGTGGCGGCAA
CAGTGGCGCGAAGCTCACCTCCTCCCCAAGCGCCACGCTCGCCTCCACCC
CTCGACCCGAGGAAAAGGGAGAGGGGGATTGCGACGGCGGTGGCTGGTGC
TGTCAGCGGGGGCGGTGAAGGGGCGGCGGTAGTGGCGGGCGGCGGCGCCA
ATGCGGTAGTGGAAAGCGAGAACGGCGGCAGTAGGAAGAGGTCGAGGATA
GAGTACGGGGAAGCGGGGGCGGATCAGAACCAGATTAACAACATCAGCAA
CAACGTCTTGGGCACGGAGAACGGGATCGGTGGCGGCGTCTTTCCGCCAG
GCTTGCCCGCAACCGGCCACCCGCAGGCGCAGATCGTCCCTCCCGGGCGT
GTTGGCGCCAGCGGTGTGGGCTTCGTTCCACATCAGGCCGGTGTCGTGCC
GGACAATGGGGGTGCCCCGGTAAATGGGCCAGGCGGAATGGGGATGGGTT
CGTGGACGGGAGGCGGCGTGCCGCAAGGAGGTGTGCAACACCCGCCGCCA
GCTGAGATGACTGTGCGGAGCCCCCAGGCGGGAGGGTTGGTGACGCAATC
GCCGCCACGGCCACCGCCTCCTCCCCCGCCGCCGCCGCCGCCGCTGCCCG
CGGCGATCGTGCACGGCCATCCAGCTCCGCCTGGTGTAATAATGATGCAG
CAGGGAGGAGGTGCGTTGCAGACCCAGCTTTCACCGGTTGCGGTGCAACA
GCAGCCCCCGGCGGCGGGCTGGCTTCCTTCCGGGGGCCCGGGATGGCAGG
AAGAGTCGGCGGGTGGGATAACTGATGAGATCGAAGAAGGGGTGGAGGAG
GGTGGGGAGGAGGAGGAGAAGGAGGAGGAGGAGGGAGAGAACGACAGCGA
AGAGGAGGGGGAGATCGTGCTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8462:4688..6862-

>mRNA_Ecto-sp13_S_contig8462.19845.1 ID=mRNA_Ecto-sp13_S_contig8462.19845.1|Name=mRNA_Ecto-sp13_S_contig8462.19845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2175bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8462:4688..6862- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCTGCCGCCGGCTGCGGAAGCTCATGGCGGCGGTGGGGGAGGTGTTCT
GACGACGGCGCTTCCTCTCACGTCGTCCGGTGGAGGCTCGCTGCTGCTCC
CGCTGCAAGGAAGCACGCCTGGAGCTGCCGTCGTCAGCGGTGGTGTAGGT
GACATAGCGACGGCGGGCACGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCCTCTCCCACCACCGCTGAGGACGGACGGTGCTGTCATGC
TCCCGTTCAATGGGGCGGCGGCAGCCGCGGCCCCGGCCGTGTCGCCAGAC
TCAGAGAGCAAAGGGGGGGCCTCGGAGGTAGGAGGATCGGGGACCGCGTT
TTTGCCCCAATCTCCGCGGAGTTCTCCTGACGCTGGGGAGAGGAGTGGAT
ACGCAGCCGGGACGAGGGTTATGGTGGATGCTCGTGGCCCCGAATCGGAG
AAGGCTGGAGAAGCAGTGCCAGTGCCAACGGCGTTTCGTCCACCGCCACC
GCCCCCGAGGTTGGCGTCGCCAAGATCTGGACCTGAAGCAGTACCACAAC
AGCAACAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAAGAGCAACATGGC
GGACAGCAGCAGCGACGCCCGCCTCCACCACCGCCACGGCAAGTATCACC
GCGGTCGCCGACAACCCCGGCGCTTCCGGAAGCTATAGGAGCATCGGCAG
CAACAGCAGCAGCCTCGGCAACGCCGCAACTGCAGCCCCCGCCCCAGCCG
CCCGCTAAGCCGCCTCTTAAAAAAAACGACGAATCGATGACAACACCGGC
GACGGCGATATCTCCGACAAGGAGCAACGCTGATCCCCGTCCACGCAGCC
CTCGACAGGGCGCATCGGCCGATCCACGAGTCGCTGCTAAGGCCAAGCAG
GGCTCAACCTCCTGCCTCTCTTCCCCCCCCAATGGAAAGAAGAAGCCCAA
ACCTCCTCCCCCCCGAAAAAAACCGGCGAGCTCCTCCCCCGGCACCGTTA
AGGTCGAACCTCCGGCGTCTCCCCCATCTACGGCAGCGTCGCCCACCGCC
GCCGCCGGTGTCAAACCGCGTGACCCCCGACGACCGAAGCCGCCGCCGTA
CCCCCGCCCCGAAAAGCCCAGGCAGCAGTCGCCGATACCGCTATTCAAGG
TCGAGGAAACGAATGTAGGGCCTGTGGTCACCGCGTTGCCCCCCCCCCCC
CCCCCGCCGCCACCACCACCGCCACTGCCGCCGCCGCCGCCGGTGCTGTC
CGAGCAGCGTATGTCACCGCCACCGGTAGTGCCTGCGGTCGTGGCGGCAA
CAGTGGCGCGAAGCTCACCTCCTCCCCAAGCGCCACGCTCGCCTCCACCC
CTCGACCCGAGGAAAAGGGAGAGGGGGATTGCGACGGCGGTGGCTGGTGC
TGTCAGCGGGGGCGGTGAAGGGGCGGCGGTAGTGGCGGGCGGCGGCGCCA
ATGCGGTAGTGGAAAGCGAGAACGGCGGCAGTAGGAAGAGGTCGAGGATA
GAGTACGGGGAAGCGGGGGCGGATCAGAACCAGATTAACAACATCAGCAA
CAACGTCTTGGGCACGGAGAACGGGATCGGTGGCGGCGTCTTTCCGCCAG
GCTTGCCCGCAACCGGCCACCCGCAGGCGCAGATCGTCCCTCCCGGGCGT
GTTGGCGCCAGCGGTGTGGGCTTCGTTCCACATCAGGCCGGTGTCGTGCC
GGACAATGGGGGTGCCCCGGTAAATGGGCCAGGCGGAATGGGGATGGGTT
CGTGGACGGGAGGCGGCGTGCCGCAAGGAGGTGTGCAACACCCGCCGCCA
GCTGAGATGACTGTGCGGAGCCCCCAGGCGGGAGGGTTGGTGACGCAATC
GCCGCCACGGCCACCGCCTCCTCCCCCGCCGCCGCCGCCGCCGCTGCCCG
CGGCGATCGTGCACGGCCATCCAGCTCCGCCTGGTGTAATAATGATGCAG
CAGGGAGGAGGTGCGTTGCAGACCCAGCTTTCACCGGTTGCGGTGCAACA
GCAGCCCCCGGCGGCGGGCTGGCTTCCTTCCGGGGGCCCGGGATGGCAGG
AAGAGTCGGCGGGTGGGATAACTGATGAGATCGAAGAAGGGGTGGAGGAG
GGTGGGGAGGAGGAGGAGAAGGAGGAGGAGGAGGGAGAGAACGACAGCGA
AGAGGAGGGGGAGATCGTGCTTTGA
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