mRNA_Ecto-sp13_S_contig84604.19844.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig84604.19844.1
Unique NamemRNA_Ecto-sp13_S_contig84604.19844.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig84604.19844.1 vs. uniprot
Match: A0A803Y7W1_MELGA (ENY2 transcription and export complex 2 subunit n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=A0A803Y7W1_MELGA)

HSP 1 Score: 65.1 bits (157), Expect = 7.170e-13
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 KDEAVRATIMQKLIETGERERLKDLLRERLIQCGWRDELKV 123
            KD  +RATI QKLIETGERERLKDLLR +LI+CGW+D+LK 
Sbjct:    3 KDAQMRATINQKLIETGERERLKDLLRAKLIECGWKDQLKA 43
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BLAST of mRNA_Ecto-sp13_S_contig84604.19844.1 vs. uniprot
Match: A0A226MHK1_CALSU (Transcription and mRNA export factor ENY2 n=1 Tax=Callipepla squamata TaxID=9009 RepID=A0A226MHK1_CALSU)

HSP 1 Score: 65.1 bits (157), Expect = 8.550e-13
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 KDEAVRATIMQKLIETGERERLKDLLRERLIQCGWRDELKV 123
            KD  +RATI QKLIETGERERLKDLLR +LI+CGW+D+LK 
Sbjct:    3 KDAQMRATINQKLIETGERERLKDLLRAKLIECGWKDQLKA 43
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BLAST of mRNA_Ecto-sp13_S_contig84604.19844.1 vs. uniprot
Match: A0A803YDP8_MELGA (ENY2 transcription and export complex 2 subunit n=2 Tax=Phasianidae TaxID=9005 RepID=A0A803YDP8_MELGA)

HSP 1 Score: 65.1 bits (157), Expect = 8.990e-13
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 KDEAVRATIMQKLIETGERERLKDLLRERLIQCGWRDELKV 123
            KD  +RATI QKLIETGERERLKDLLR +LI+CGW+D+LK 
Sbjct:    3 KDAQMRATINQKLIETGERERLKDLLRAKLIECGWKDQLKA 43
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BLAST of mRNA_Ecto-sp13_S_contig84604.19844.1 vs. uniprot
Match: A0A210QN45_MIZYE (Transcription and mRNA export factor ENY2 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210QN45_MIZYE)

HSP 1 Score: 65.5 bits (158), Expect = 1.070e-12
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 KDEAVRATIMQKLIETGERERLKDLLRERLIQCGWRDELKV 123
            KD  +RATI QKL+ETGERERLK+LLR RLI+CGWRD+LK 
Sbjct:   10 KDAQMRATINQKLVETGERERLKELLRTRLIECGWRDQLKA 50
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BLAST of mRNA_Ecto-sp13_S_contig84604.19844.1 vs. uniprot
Match: A0A803XMX7_MELGA (Transcription and mRNA export factor ENY2 n=13 Tax=Galloanserae TaxID=1549675 RepID=A0A803XMX7_MELGA)

HSP 1 Score: 65.1 bits (157), Expect = 1.280e-12
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 KDEAVRATIMQKLIETGERERLKDLLRERLIQCGWRDELKV 123
            KD  +RATI QKLIETGERERLKDLLR +LI+CGW+D+LK 
Sbjct:    3 KDAQMRATINQKLIETGERERLKDLLRAKLIECGWKDQLKA 43
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BLAST of mRNA_Ecto-sp13_S_contig84604.19844.1 vs. uniprot
Match: A0A226PM17_COLVI (Transcription and mRNA export factor ENY2 n=3 Tax=Neognathae TaxID=8825 RepID=A0A226PM17_COLVI)

HSP 1 Score: 65.1 bits (157), Expect = 1.280e-12
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 KDEAVRATIMQKLIETGERERLKDLLRERLIQCGWRDELKV 123
            KD  +RATI QKLIETGERERLKDLLR +LI+CGW+D+LK 
Sbjct:    3 KDAQMRATINQKLIETGERERLKDLLRAKLIECGWKDQLKA 43
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84604.19844.1 vs. uniprot
Match: A0A2C9M5V1_BIOGL (Transcription and mRNA export factor ENY2 n=3 Tax=Euthyneura TaxID=216307 RepID=A0A2C9M5V1_BIOGL)

HSP 1 Score: 65.1 bits (157), Expect = 1.510e-12
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 KDEAVRATIMQKLIETGERERLKDLLRERLIQCGWRDELKV 123
            KD  +RATI QKL+ETGERERLK+LLR RLI+CGWRD+LK 
Sbjct:   10 KDAHMRATINQKLVETGERERLKELLRARLIECGWRDQLKA 50
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BLAST of mRNA_Ecto-sp13_S_contig84604.19844.1 vs. uniprot
Match: A0A8J1USV3_OWEFU (Transcription and mRNA export factor ENY2 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1USV3_OWEFU)

HSP 1 Score: 64.3 bits (155), Expect = 2.900e-12
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 KDEAVRATIMQKLIETGERERLKDLLRERLIQCGWRDELKV 123
            +D  +RATI QKL+ETGERERLK+LLR RLI+CGWRD+LK 
Sbjct:    8 RDAQMRATINQKLVETGERERLKELLRTRLIECGWRDQLKA 48
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84604.19844.1 vs. uniprot
Match: A0A8D2MNV8_ZONAL (ENY2 transcription and export complex 2 subunit n=1 Tax=Zonotrichia albicollis TaxID=44394 RepID=A0A8D2MNV8_ZONAL)

HSP 1 Score: 63.2 bits (152), Expect = 3.010e-12
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 KDEAVRATIMQKLIETGERERLKDLLRERLIQCGWRDELK 120
            KD  +RATI QKLIETGERERLK+LLR +LI+CGW+D+LK
Sbjct:    7 KDAQMRATINQKLIETGERERLKELLRAKLIECGWKDQLK 46
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84604.19844.1 vs. uniprot
Match: A0A1S3IAJ2_LINUN (Transcription and mRNA export factor ENY2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IAJ2_LINUN)

HSP 1 Score: 64.3 bits (155), Expect = 3.050e-12
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 KDEAVRATIMQKLIETGERERLKDLLRERLIQCGWRDELKV 123
            KD  +RA+I QKL+ETGERERLK+LLR RLI+CGWRD+LK 
Sbjct:   10 KDAQMRASISQKLVETGERERLKELLRTRLIECGWRDQLKA 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84604.19844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A803Y7W1_MELGA7.170e-1375.61ENY2 transcription and export complex 2 subunit n=... [more]
A0A226MHK1_CALSU8.550e-1375.61Transcription and mRNA export factor ENY2 n=1 Tax=... [more]
A0A803YDP8_MELGA8.990e-1375.61ENY2 transcription and export complex 2 subunit n=... [more]
A0A210QN45_MIZYE1.070e-1275.61Transcription and mRNA export factor ENY2 n=2 Tax=... [more]
A0A803XMX7_MELGA1.280e-1275.61Transcription and mRNA export factor ENY2 n=13 Tax... [more]
A0A226PM17_COLVI1.280e-1275.61Transcription and mRNA export factor ENY2 n=3 Tax=... [more]
A0A2C9M5V1_BIOGL1.510e-1275.61Transcription and mRNA export factor ENY2 n=3 Tax=... [more]
A0A8J1USV3_OWEFU2.900e-1273.17Transcription and mRNA export factor ENY2 n=1 Tax=... [more]
A0A8D2MNV8_ZONAL3.010e-1275.00ENY2 transcription and export complex 2 subunit n=... [more]
A0A1S3IAJ2_LINUN3.050e-1273.17Transcription and mRNA export factor ENY2 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84604contigEcto-sp13_S_contig84604:456..587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size105
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464115.723516-CDS-Ecto-sp13_S_contig84604:455..5601681464115.723516-CDS-Ecto-sp13_S_contig84604:455..560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84604 456..560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464115.7361953-UTR-Ecto-sp13_S_contig84604:560..5871681464115.7361953-UTR-Ecto-sp13_S_contig84604:560..587Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig84604 561..587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84604.19844.1prot_Ecto-sp13_S_contig84604.19844.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig84604 456..560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig84604.19844.1

>prot_Ecto-sp13_S_contig84604.19844.1 ID=prot_Ecto-sp13_S_contig84604.19844.1|Name=mRNA_Ecto-sp13_S_contig84604.19844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
MQKLIETGERERLKDLLRERLIQCGWRDELKVCPS
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mRNA from alignment at Ecto-sp13_S_contig84604:456..587-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig84604.19844.1 ID=mRNA_Ecto-sp13_S_contig84604.19844.1|Name=mRNA_Ecto-sp13_S_contig84604.19844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84604:456..587- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGATGAGGCAGTGCGAGCGACGATCATGCAGAAGCTCATAGAGACCGG
GGAGCGCGAGAGGCTGAAAGACCTCCTGCGAGAACGTCTCATTCAGTGCG
GATGGCGGGACGAGCTCAAGGTGTGTCCTTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84604:456..587-

>mRNA_Ecto-sp13_S_contig84604.19844.1 ID=mRNA_Ecto-sp13_S_contig84604.19844.1|Name=mRNA_Ecto-sp13_S_contig84604.19844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84604:456..587- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAAGCTCATAGAGACCGGGGAGCGCGAGAGGCTGAAAGACCTCCT
GCGAGAACGTCTCATTCAGTGCGGATGGCGGGACGAGCTCAAGGTGTGTC
CTTCA
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