mRNA_Ecto-sp13_S_contig12399.1984.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12399.1984.1
Unique NamemRNA_Ecto-sp13_S_contig12399.1984.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12399.1984.1 vs. uniprot
Match: A0A6H5JAL8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAL8_9PHAE)

HSP 1 Score: 476 bits (1225), Expect = 2.630e-155
Identity = 269/285 (94.39%), Postives = 275/285 (96.49%), Query Frame = 1 
Query:    1 GSPPRKTLSAALSLMEEAQQAGVEVDAATTDAVLTALGKAKGKDEQLLALFLQAEERGLRLKRQSYAWAVVAYKRCGKAKEALDSALSFSERGIVMTVVGWNAAMHAASVTGEPGKALELLEEAKSKGVRPTEVTYATAIGACAKATSNVKVNAQKAVLXXXXXXXXXXXXYPPAHQAALTALAASEGHRAAMDLLAKMRANGTRLTSASYSPALKSAGQVGDWRNAIALIDVMTRASVTDKDAGPDVVCFNYAMTACAKAGECELAHRVLSRIQACGLAANLVS 855
            GSPPRKTLSAALSLMEEAQQAGVEVDAATTDA+LTALGKAKGKDEQLLALF QAEERGLRLKRQSYAWAVVAYKRCGKAKEALDSALSFSERGIVMTVVGWNAAMHAASVTGEPGKALELLEEAKSKGV+PTEVTYATAIGACAKAT+NVK NA+    XXXXXXXXXXXX  PAHQAALTALAASEGHRAAMDLLAKMRANGTRLTSASYSP LKSA QVGDWRNAIALIDVMTRASVTDKDAGPDVVCFNYAM+ACAKAGECELAHRV+SRIQACGLAANLVS
Sbjct:  398 GSPPRKTLSAALSLMEEAQQAGVEVDAATTDAILTALGKAKGKDEQLLALFRQAEERGLRLKRQSYAWAVVAYKRCGKAKEALDSALSFSERGIVMTVVGWNAAMHAASVTGEPGKALELLEEAKSKGVKPTEVTYATAIGACAKATTNVKANARXXXXXXXXXXXXXXXXXXPAHQAALTALAASEGHRAAMDLLAKMRANGTRLTSASYSPVLKSAAQVGDWRNAIALIDVMTRASVTDKDAGPDVVCFNYAMSACAKAGECELAHRVMSRIQACGLAANLVS 682
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12399.1984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAL8_9PHAE2.630e-15594.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12399contigEcto-sp13_S_contig12399:507..4657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score499.2
Seed ortholog evalue1.4e-138
Seed eggNOG ortholog2880.D7G714
Model size915
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-01_011460.3
Cds size915
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12399.1984.1prot_Ecto-sp13_S_contig12399.1984.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12399 507..4657 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462659.3739424-CDS-Ecto-sp13_S_contig12399:506..6261681462659.3739424-CDS-Ecto-sp13_S_contig12399:506..626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12399 507..626 -
1681462659.3923774-CDS-Ecto-sp13_S_contig12399:1236..14311681462659.3923774-CDS-Ecto-sp13_S_contig12399:1236..1431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12399 1237..1431 -
1681462659.4026635-CDS-Ecto-sp13_S_contig12399:1904..20361681462659.4026635-CDS-Ecto-sp13_S_contig12399:1904..2036Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12399 1905..2036 -
1681462659.4121008-CDS-Ecto-sp13_S_contig12399:2392..24851681462659.4121008-CDS-Ecto-sp13_S_contig12399:2392..2485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12399 2393..2485 -
1681462659.4220204-CDS-Ecto-sp13_S_contig12399:3136..32261681462659.4220204-CDS-Ecto-sp13_S_contig12399:3136..3226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12399 3137..3226 -
1681462659.4341533-CDS-Ecto-sp13_S_contig12399:3944..41121681462659.4341533-CDS-Ecto-sp13_S_contig12399:3944..4112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12399 3945..4112 -
1681462659.4435208-CDS-Ecto-sp13_S_contig12399:4540..46571681462659.4435208-CDS-Ecto-sp13_S_contig12399:4540..4657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12399 4541..4657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12399.1984.1

>prot_Ecto-sp13_S_contig12399.1984.1 ID=prot_Ecto-sp13_S_contig12399.1984.1|Name=mRNA_Ecto-sp13_S_contig12399.1984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=305bp
GSPPRKTLSAALSLMEEAQQAGVEVDAATTDAVLTALGKAKGKDEQLLAL
FLQAEERGLRLKRQSYAWAVVAYKRCGKAKEALDSALSFSERGIVMTVVG
WNAAMHAASVTGEPGKALELLEEAKSKGVRPTEVTYATAIGACAKATSNV
KVNAQKAVLLLEEMEAAGLEPYPPAHQAALTALAASEGHRAAMDLLAKMR
ANGTRLTSASYSPALKSAGQVGDWRNAIALIDVMTRASVTDKDAGPDVVC
FNYAMTACAKAGECELAHRVLSRIQACGLAANLVSYGICMDAYAKAGLWE
KVKR*
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mRNA from alignment at Ecto-sp13_S_contig12399:507..4657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12399.1984.1 ID=mRNA_Ecto-sp13_S_contig12399.1984.1|Name=mRNA_Ecto-sp13_S_contig12399.1984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4151bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12399:507..4657- (Ectocarpus species13 EcNAP12_S_4_19m)
GGATCTCCACCGAGGAAGACGTTGTCGGCGGCATTGTCCTTGATGGAAGA
GGCGCAGCAGGCGGGGGTAGAGGTGGATGCAGCCACAACGGATGCTGTCC
TCACGGCCCTGGGAAAGGTGAGCGTGCACGTAGGGTGTTTTGTGATGTGA
TTGTGGGTGTGGCGTTGGTGCCCGTTGGACTTTAAAGGGTCGTCGGCCAG
CCGCAAAAGCGATGTAAAACGGTGGTGCGGTGGTGCAGATAAAGGCTCAA
TAGTTTTTGCCTCCCAGGCCTCTTGGGCGGTGGTCACGTCACAGGAACCT
ATCACAATGATGTTGACGCTTGAATGCCCACCACGGCGGCTGCACTAACG
TCGAAACATGTGCGTGCGCAGCGGTTTCGAGTACTTGCAATAGCAGAGCC
TCCGCCCGCCCCTGAGAAAGGGCCACCTGAACAGAAAGCACGTGGCACTT
CTTTTCTAGTTTTCACCATCTTCTCTGGCTTTTGGTACCCTTTCCGCCCA
CTTTTGCATGATTGATTGCGTCTGTTTATTCCCGAAAATCATCAGGCTAA
GGGGAAAGACGAGCAGCTGCTGGCGCTCTTCCTGCAGGCGGAAGAGAGAG
GGTTGAGGCTCAAGCGCCAAAGTTACGCCTGGGCGGTTGTAGCGTACAAG
AGGTGCGGCAAGGCCAAGGAGGCTCTAGACTCCGCCTTGTCTTTTTCGGA
ACGAGGGATCGTGGTGAGTAGGGCGTCGTTGGTGCTGCGTCGCGCCTCCC
GCCCCGTCACCCGAACCTTGTTCCCTGGCGGTTCGATACGACGCCTATAA
TAGCCTTAGGCGATGGCAGTTGCGGATGGTGTATGATTCCTGCGGCCGGG
GGGGGGTAACTGTGTTCGGCGGCGTGCCGTTCATTTCGGCGCGAAACGGT
GTCACCTGTATACGCTGTCATGGGGAAGTGTTTGTTGGGGCAGCGCCGAC
CGTTCGCGAGGATGTCCGTGGTGTCGCTGCGCGCCTCTTCGTGGCGACGA
GGGAAGATAAATTGGCGTTTCTGTCTCTTGTTCGCCGTCGGGCGCACTAT
CTTTTTCTCGCTGATTCTGGCTCGTTCTCCCTCCCTCTTTTACTTGGGTA
TTTGAGAGGACGTGGTAGAGCTTTGCTTTTGGGCCTTGTATTTGTGCCGG
CCAAGCTGTTGCTTTTGCAGCAGCACTCTTCGTTATTGCAATCGGGAAAC
AAGACATGGTAACATGTTGGATCACCCGTAGACTGTTCATTGTGATGTGA
CTGGGACCCACTCTCCTCGAGAGAACCCTGTACATGTTGATGCTCCTATC
TTTCGCTCTCTTTTACCCTCTTTCCCTCTCACTCCGTATCTCTCCCCGCT
CCCTCCCTCTCCCCCTCCCTCTCTCGCACTCGCTCCCCTTCTCTCTACAT
ATGCATCTGCGTGTGACGCGTGGTTTTGTAGATGACTGTCGTCGGGTGGA
ACGCAGCCATGCACGCCGCGAGCGTCACCGGGGAGCCGGGCAAGGCGCTC
GAGCTTCTGGAGGAGGCCAAGGTGACTCAATCTACTCGATTGATGATTGG
CAAGAGGAGACACACGAAAGGGGTGACGACGTGTGCCACTGAATGGTCCT
GTTGTGCTAGCCACTACTACCGCGATTACCGTAGCCATTTTCAACAGCCG
GTGGTGTCGTATGCAAGGACCGCAGGCTGTGGTTGACGTGCGATGTCGTG
ACGGCGGTAGGGTTTGGACCTTGCTTCCATGTGAGAACAGCGTTGCTGCT
TCGGTCGTGTTGTGGTTGGTTGTGTTCTCAACTATTAACACCGTTCTCGT
CCACCTCTGGACTAATCTCGCACCCAAACCCCTCTTTAAAAAGAACAAGT
ATGGTTCTTGCAATACAGAACGCGCCGCCCCTTGAGGACTCAGGAGTTAA
GAAATGAGCATAATAATCAACAAAGTTTTAAAACTTGAGCACCATTTGCG
AGTTCGGTTAAGAACCCCTTCACTGAATCCTATGTAGCGACCATTGAGAG
CATAACCCTTGGACTAAGAACCGCAGCCTCGGCCGAAACTATTGCTTCTG
TTGCTTCTGTGGGGCGTTCTGTAGTTTGTTGTCAAGCGTGTCCGCGCGGG
GAGAAACCTGTTCCCACCTCCCGCAACACTATCGCCGAATCCTTTTCCCC
CGCCCCCTTCCTTTCGAAACAGTCCAAGGGTGTTAGGCCGACGGAAGTGA
CGTACGCCACAGCCATCGGTGCCTGCGCTAAGGCCACCTCGAACGTCAAA
GTCAATGCTCAAAAGGTACATTGCTTGCATGGCAGCAACCTGTGGACTAC
GCCCCATCAAGACGTGTAGGCTCCGTAGCCCATACTAGCCTGTGTCCTGT
TTCGGCTACGCGTAGCGCGTCGCTCGTCTTTTGTTCTTGGTCCGGATTGG
TCCGGAGAGGTCGACGAACGTGGTCATGCAGTCGTGCGCCCTAGCAATGC
AACTTCCGATCTCGTGTTTCCTCGTGACGCTGAATCGCGAATCAGCAAGT
TGGTTGGTTGTGCAGCTCATGGCCGGCCCAAAAAGTGTTGAAATTCCCCT
TCTCCCTTTGTCGTTGCCCCTGTTAGACTCCCCACTACCCCCTGCTGCTG
ACCCCTACCTTCCCTTCTCAGGCCGTGTTATTGTTGGAAGAGATGGAAGC
GGCGGGATTAGAACCATACCCTCCGGCGCACCAGGCGGCGCTCACCGCGC
TGGCGGCCTCGGAAGGGCACAGGGCTGCCATGGACCTCCTCGCCAAGATG
CGGGTGGGTTCGATCGCCCCCCTCCCTCCCCCGCAAGACTGGCTGAAGTG
ATCGCATGTCATCGAAAACGAACTGTTTTCTGTCGCTCGTTGCTGGCGCA
AATGTCCGCTTAGAAATGGCAACAATATCGTGCGAGGTTTGTTGGTTGGG
CCAGAACCGGCGGCGCCAAGTGAAGTGATGCGTCTTGTCGTGTAGCACGA
CGGCGGATCATTTGTACTGCACACGTGAACGGGGCGGAGTGGGGCCTGTA
TGACCGTGCTTATTGCATACACGCTTCATCGGCGCGGATCGTAGAGGTGA
GAGATGGGGCTCACCGGGCTTCCTGTTTGGATCCCTTCCCAGCCGTGGTC
GCCCTCTGCATTCTCCCATAGATTTTTTTCTCTCCGTACCTATCCCCCTC
CTTATCTCTCCCTTTCCCCTTCGATTTGTTCATCTCGCTGTCGACGTATT
TGACCCTTGACCTTGTCTTCGTGAAGGCAAATGGGACACGCTTGACGTCA
GCGAGCTACAGCCCTGCCCTGAAATCAGCAGGCCAGGTCGGAGATTGGCG
GAACGCGATCGCCCTGATAGACGTCATGACCAGGGCCAGCGTCACCGACA
AGGACGCCGGGCCCGACGTGGTCTGCTTCAACTACGCCATGACTGCCTGC
GCTAAGGCGGGGGAGTGCGAGGTAGGCCTCGAGGGTGTAGGCCATGCGGG
GATGTCGAGGCCTGACTTGTTGCTGTAAGGTTGACGCTCTCCAAGGGAGA
GAGTCGTTGCCGTCAGCTTTTACCGGGAGCGCCCACTGGTGTTGAGAAGA
TACGCATGGCATAAAGAGAGACACCACCCGTTCGAGACATATAACAACCC
GTTTGACGGGTCGCTGCGAATCATTTCCTGCGAGGATTGAGGGACTCTTA
ATGGATACTTTATGTAGTTGAGTCTGTTTCAAAGCCTATCAGCATACGCG
TCCACTACATATTTCTTTTGTGTGTTCGGCGCTTTGGCTTGTGCTCGGCG
TGGTGGTGGAATGATTCGAGGCTGCCAAGGGCAGCTGCTTGGGACTGGTC
GAGGGTCCCGAAAGCGGTATGTATGCATCATCCGGGGCACGGACAGGCAG
CAAAAGTGTTCATGTTTGTTGATGCAGCGTCGGTGCGCTTCAGCTGGGAC
ACACTCTCTTCTTGATTGCGGTGATGATGCAGACGTCGGGATACGCCCAC
TCCAGTACCTTCGGCTACGCCCTGGATAAGACGATTCCCCCCCTCCCCCC
CAACCTTCGGCGCCCGACCTTATCTATGCAGCTCGCTCACAGGGTCTTGA
GCCGCATTCAAGCGTGTGGTCTTGCTGCGAACCTGGTGTCCTACGGGATT
TGTATGGACGCCTACGCGAAGGCGGGACTGTGGGAAAAGGTGAAGCGATG
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12399:507..4657-

>mRNA_Ecto-sp13_S_contig12399.1984.1 ID=mRNA_Ecto-sp13_S_contig12399.1984.1|Name=mRNA_Ecto-sp13_S_contig12399.1984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12399:507..4657- (Ectocarpus species13 EcNAP12_S_4_19m)
GGATCTCCACCGAGGAAGACGTTGTCGGCGGCATTGTCCTTGATGGAAGA
GGCGCAGCAGGCGGGGGTAGAGGTGGATGCAGCCACAACGGATGCTGTCC
TCACGGCCCTGGGAAAGGCTAAGGGGAAAGACGAGCAGCTGCTGGCGCTC
TTCCTGCAGGCGGAAGAGAGAGGGTTGAGGCTCAAGCGCCAAAGTTACGC
CTGGGCGGTTGTAGCGTACAAGAGGTGCGGCAAGGCCAAGGAGGCTCTAG
ACTCCGCCTTGTCTTTTTCGGAACGAGGGATCGTGATGACTGTCGTCGGG
TGGAACGCAGCCATGCACGCCGCGAGCGTCACCGGGGAGCCGGGCAAGGC
GCTCGAGCTTCTGGAGGAGGCCAAGTCCAAGGGTGTTAGGCCGACGGAAG
TGACGTACGCCACAGCCATCGGTGCCTGCGCTAAGGCCACCTCGAACGTC
AAAGTCAATGCTCAAAAGGCCGTGTTATTGTTGGAAGAGATGGAAGCGGC
GGGATTAGAACCATACCCTCCGGCGCACCAGGCGGCGCTCACCGCGCTGG
CGGCCTCGGAAGGGCACAGGGCTGCCATGGACCTCCTCGCCAAGATGCGG
GCAAATGGGACACGCTTGACGTCAGCGAGCTACAGCCCTGCCCTGAAATC
AGCAGGCCAGGTCGGAGATTGGCGGAACGCGATCGCCCTGATAGACGTCA
TGACCAGGGCCAGCGTCACCGACAAGGACGCCGGGCCCGACGTGGTCTGC
TTCAACTACGCCATGACTGCCTGCGCTAAGGCGGGGGAGTGCGAGCTCGC
TCACAGGGTCTTGAGCCGCATTCAAGCGTGTGGTCTTGCTGCGAACCTGG
TGTCCTACGGGATTTGTATGGACGCCTACGCGAAGGCGGGACTGTGGGAA
AAGGTGAAGCGATGA
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