mRNA_Ecto-sp13_S_contig8457.19837.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8457.19837.1
Unique NamemRNA_Ecto-sp13_S_contig8457.19837.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8457.19837.1 vs. uniprot
Match: A0A6H5KX62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX62_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 1.590e-79
Identity = 134/155 (86.45%), Postives = 140/155 (90.32%), Query Frame = -2 
Query:  110 DTCGRTQKNSGKRSTRDAVRPRPAPRGQQRNTEKTKLFFSGAASKSRRCVRGVEMQANTNGKSNRADERSLNDSVSVAYGLKKDREDDTFSYTSSAKTQFSVSVADGGGSNGLGIVRDSSDESDDDDLGEASRAIANPIFGDTTRAVGRQPKNKR 574
            DTCGRTQKNSGKRS RD VRPRPAPRGQQ NT + KLFFSGAASKSR+C+RG+EMQ NTNGKSNRADERSLNDSV+V +GLK DREDDTFSYTSSAKT FSV VADG GSNGL IVR SSDESDDDDLGE SRAIANPIFGD TRAVGRQPKNKR
Sbjct:  422 DTCGRTQKNSGKRSKRDGVRPRPAPRGQQHNTGRPKLFFSGAASKSRKCIRGIEMQTNTNGKSNRADERSLNDSVTVKFGLKNDREDDTFSYTSSAKTHFSVRVADGEGSNGLAIVRASSDESDDDDLGEVSRAIANPIFGDMTRAVGRQPKNKR 576
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8457.19837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX62_9PHAE1.590e-7986.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8457contigEcto-sp13_S_contig8457:4961..5535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size575
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464115.0044699-UTR-Ecto-sp13_S_contig8457:4960..50121681464115.0044699-UTR-Ecto-sp13_S_contig8457:4960..5012Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8457 4961..5012 +
1681464115.039551-UTR-Ecto-sp13_S_contig8457:5426..55351681464115.039551-UTR-Ecto-sp13_S_contig8457:5426..5535Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8457 5427..5535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464115.022681-CDS-Ecto-sp13_S_contig8457:5012..54261681464115.022681-CDS-Ecto-sp13_S_contig8457:5012..5426Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8457 5013..5426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8457.19837.1prot_Ecto-sp13_S_contig8457.19837.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8457 5013..5426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8457.19837.1

>prot_Ecto-sp13_S_contig8457.19837.1 ID=prot_Ecto-sp13_S_contig8457.19837.1|Name=mRNA_Ecto-sp13_S_contig8457.19837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MNTLQLLSRTHTEEAADRLPFIFRLATHRPRRVPEDRVGDSTRRLPQVVI
VALIAGVSDDTQTIASPAVGDADGELCLGGRRVAECIVFPVFLEAVRDRN
AVVERPLVCPVAFSVSVRLHLDTTYASPGFARCPAEE*
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mRNA from alignment at Ecto-sp13_S_contig8457:4961..5535+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8457.19837.1 ID=mRNA_Ecto-sp13_S_contig8457.19837.1|Name=mRNA_Ecto-sp13_S_contig8457.19837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=575bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8457:4961..5535+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCATAGCAGGGATGCGAGGTCAACGGTCCAACGGTTAAGGCCTGCGGGT
ACATGAATACCCTTCAACTTTTATCGCGAACTCACACAGAGGAAGCAGCG
GACCGTTTACCGTTTATTTTTCGGTTGGCGACCCACCGCCCTCGTCGTGT
CCCCGAAGATAGGGTTGGCGATAGCACGAGACGCCTCCCCCAGGTCGTCA
TCGTCGCTCTCATCGCTGGAGTCTCTGACGATACCCAAACCATTGCTTCC
CCCGCCGTCGGCGACGCTGACGGAGAACTGTGTCTTGGCGGACGACGTGT
AGCTGAATGTATCGTCTTCCCTGTCTTTCTTGAGGCCGTACGCGACCGAA
ACGCTGTCGTTGAGCGACCTCTCGTCTGCCCTGTTGCTTTTTCCGTTAGT
GTTCGCTTGCATCTCGACACCACGTACGCATCTCCTGGATTTGCTCGCTG
CCCCGCTGAAGAATAGCTTGGTCTTTTCGGTGTTACGTTGCTGCCCGCGT
GGGGCGGGGCGTGGCCTTACCGCATCCCTCGTGGAACGCTTGCCGGAGTT
TTTCTGGGTGCGACCACAGGTGTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8457:4961..5535+

>mRNA_Ecto-sp13_S_contig8457.19837.1 ID=mRNA_Ecto-sp13_S_contig8457.19837.1|Name=mRNA_Ecto-sp13_S_contig8457.19837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8457:4961..5535+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATACCCTTCAACTTTTATCGCGAACTCACACAGAGGAAGCAGCGGA
CCGTTTACCGTTTATTTTTCGGTTGGCGACCCACCGCCCTCGTCGTGTCC
CCGAAGATAGGGTTGGCGATAGCACGAGACGCCTCCCCCAGGTCGTCATC
GTCGCTCTCATCGCTGGAGTCTCTGACGATACCCAAACCATTGCTTCCCC
CGCCGTCGGCGACGCTGACGGAGAACTGTGTCTTGGCGGACGACGTGTAG
CTGAATGTATCGTCTTCCCTGTCTTTCTTGAGGCCGTACGCGACCGAAAC
GCTGTCGTTGAGCGACCTCTCGTCTGCCCTGTTGCTTTTTCCGTTAGTGT
TCGCTTGCATCTCGACACCACGTACGCATCTCCTGGATTTGCTCGCTGCC
CCGCTGAAGAATAG
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