mRNA_Ecto-sp13_S_contig8453.19834.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8453.19834.1
Unique NamemRNA_Ecto-sp13_S_contig8453.19834.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8453.19834.1 vs. uniprot
Match: D7G7J9_ECTSI (Apt1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J9_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 1.030e-87
Identity = 177/227 (77.97%), Postives = 180/227 (79.30%), Query Frame = 3 
Query:  495 ARCAMYGACVLCCRSMLASELLRKAVRLLKQKLQQRPNTHLALHLKRLKLELWRDESNTPFLRAEVRRVTADVMVYDDSSGSVDLQVGSLWASQVRGCGYSTAEAAXXXXXXEQLTGPPSTPLSPTQTGRRGKKTRGLAAXXXXXXXXXRGASDWWRGGEGGPADAARAGQQTLMALEVVKPLMRQDLERLSDQASRAGERHFGNLRGWSPREVTVHVQIQLGSPIG 1175
            A C +  A VLCCRSMLASELLRKAVRLLKQKLQQRPNTHLALHLKRLKLELWRDESN PFLRAEVRRVTADVMVYDDSSGSVDLQVGSLWASQVRGCGY+ AEAAXXXXXX                            XXXXXXX  RGASDWWR GEGGPADAARAGQQTLMALEVVKPLMRQDLERLSDQ         GNLRGWSPRE+TVHVQIQLGSPIG
Sbjct:  325 ALCHLRRARVLCCRSMLASELLRKAVRLLKQKLQQRPNTHLALHLKRLKLELWRDESNAPFLRAEVRRVTADVMVYDDSSGSVDLQVGSLWASQVRGCGYNPAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERGASDWWRAGEGGPADAARAGQQTLMALEVVKPLMRQDLERLSDQ---------GNLRGWSPREITVHVQIQLGSPIG 542
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BLAST of mRNA_Ecto-sp13_S_contig8453.19834.1 vs. uniprot
Match: A0A6H5KUC4_9PHAE (Apt1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC4_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 7.150e-81
Identity = 160/184 (86.96%), Postives = 163/184 (88.59%), Query Frame = 3 
Query:  534 RSMLASELLRKAVRLLKQKLQQRPNTHLALHLKRLKLELWRDESNTPFLRAEVRRVTADVMVYDDSSGSVDLQVGSLWASQVRGCGYSTAEAAXXXXXXEQLT--GPPSTPLSPTQTGRRGKKTRGLAAXXXXXXXXXRGASDWWRGGEGGPADAARAGQQTLMALEVVKPLMRQDLERLSDQA 1079
            RSMLASELLRKAVRLLKQKLQQRPNTHL LHLKRLKLELWRDES+TPFLRAEVRRVTADVMVYDDSSGSVDLQVGSLWASQVRGCGYS AEAAXXXXXX      G  STPLSPTQTGR+GKKTRGLAA         RGASDWWR GE GPADAARAGQQTLMALEVVKPL+RQDLERLSDQA
Sbjct:  833 RSMLASELLRKAVRLLKQKLQQRPNTHLVLHLKRLKLELWRDESSTPFLRAEVRRVTADVMVYDDSSGSVDLQVGSLWASQVRGCGYSPAEAAXXXXXXXXXXXXGXXSTPLSPTQTGRQGKKTRGLAAAATKEEGEERGASDWWRAGEWGPADAARAGQQTLMALEVVKPLLRQDLERLSDQA 1016
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8453.19834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7J9_ECTSI1.030e-8777.97Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUC4_9PHAE7.150e-8186.96Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8453contigEcto-sp13_S_contig8453:1175..6553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1175
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionFMP27, C-terminal
Ec32 orthologEc-22_002130.1
Cds size480
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8453.19834.1prot_Ecto-sp13_S_contig8453.19834.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8453 3360..5837 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464114.7993739-UTR-Ecto-sp13_S_contig8453:1174..12461681464114.7993739-UTR-Ecto-sp13_S_contig8453:1174..1246Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8453 1175..1246 -
1681464114.8111832-UTR-Ecto-sp13_S_contig8453:1745..20961681464114.8111832-UTR-Ecto-sp13_S_contig8453:1745..2096Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8453 1746..2096 -
1681464114.8291256-UTR-Ecto-sp13_S_contig8453:3237..33591681464114.8291256-UTR-Ecto-sp13_S_contig8453:3237..3359Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8453 3238..3359 -
1681464114.884837-UTR-Ecto-sp13_S_contig8453:5837..59241681464114.884837-UTR-Ecto-sp13_S_contig8453:5837..5924Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8453 5838..5924 -
1681464114.8942764-UTR-Ecto-sp13_S_contig8453:6490..65531681464114.8942764-UTR-Ecto-sp13_S_contig8453:6490..6553Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8453 6491..6553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464114.84346-CDS-Ecto-sp13_S_contig8453:3359..33711681464114.84346-CDS-Ecto-sp13_S_contig8453:3359..3371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8453 3360..3371 -
1681464114.8567748-CDS-Ecto-sp13_S_contig8453:4436..46611681464114.8567748-CDS-Ecto-sp13_S_contig8453:4436..4661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8453 4437..4661 -
1681464114.8749566-CDS-Ecto-sp13_S_contig8453:5594..58371681464114.8749566-CDS-Ecto-sp13_S_contig8453:5594..5837Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8453 5595..5837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8453.19834.1

>prot_Ecto-sp13_S_contig8453.19834.1 ID=prot_Ecto-sp13_S_contig8453.19834.1|Name=mRNA_Ecto-sp13_S_contig8453.19834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
MLKATRSSAGATGNPDWGSGRRSSAADGGGVAEGMEDDPVAPGSSHRRNS
RGMGARVFMRPPPTVASSWATQRQADWETLEGVKERIVPRAARPLPFFVL
CSFCDDTGVFTYPLVRVVPCTARVCCVAGACWPRSSCGRPCVCSSRSCNN
APTPTSPCT*
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mRNA from alignment at Ecto-sp13_S_contig8453:1175..6553-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8453.19834.1 ID=mRNA_Ecto-sp13_S_contig8453.19834.1|Name=mRNA_Ecto-sp13_S_contig8453.19834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5379bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8453:1175..6553- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCTCGCACACCATGGCGCTGTCGAAAACAACGTGATCAAGGTGGACCT
CCCCGTCATACAGGTACTAACTGCAGGGCACGTCAGTCGTTTGTTGCGTT
GAGCTGATGGGGGTACATGAACTCTTCCTCCCTGTTTGCCTTCGGCAACC
ATGCCTGGCTTTGCAAACATTGCTGTTTGAAAAGGGGTGAAGCTAGATAC
AGTTCACGCCAAGATAGTTTCCGGGGGGAATGCAAATTGGACGTGTGGAG
CGGATTGGTTTTGCAGGTGTTACGGAAGCGATGTTCCCGGCACTGTTTTT
TTTCTCCTGCGCTTTCGTCGTGCGCAACTAAAATAGCCGCACTGACGAAT
GCTTTATTTTTGGCGCATGAAATGCGTCCGCAAGTTGTGTCCAGCCGCAT
TCCTTCGAACGGCGTCCATCGATTACTCATGTTAGCACCGAGAGCTGGCT
TTACTTTGGGTTCGCCCCTAGAGCTGGGTTCTTTTTTCTCCCTGTTAATG
GCTCGACATCCACAGTTCACTTATGGTCGGTAGATTTGTTTCAAACCTTA
CAGCAGTGGTGTGAGGATTCTCAGCTCTATATCCCGCCTCCTCCCGACAC
AAACTACAATTGTATGACGAACGAACAAGGCCGCCCTCAACAGCCTTCAG
CTCCGACTAGTCGCCACGGTCGTGTCCGAGGTCCTCGCGAGCCCTCTTCC
ACCGGTAGTGCTTGCCATGCTCAAGGCCACAAGGAGTAGCGCGGGGGCGA
CGGGGAATCCAGACTGGGGGAGTGGCCGGCGGAGTTCCGCCGCAGATGGC
GGTGGCGTAGCGGAGGGGATGGAGGACGATCCGGTGGCCCCGGGGAGCAG
CCACCGCAGGAATTCGCGGGGTATGGGAGCGCGGGTGTTCATGCGCCCAC
CTCCCACGGTGGCGAGCTCGTGGGCAACGCAACGCCAGGCCGACTGGGAA
ACCTTGGAGGTGTGGGGGGTAGCAGATGTAGTTGTGCACGCGGGCAGCGT
AAGCTTTTTGGGGCACGGTTGTGCGTGGTTGCAGATGTGTGTGGCGGTTT
GGATTCGGAAATAGCTAGCCTCGCTTGTATTGTGGAGGGCAACGAAGGCT
GGCCACAAGACCTGGTTCTGATTAGCACGAAGAAGAGAATGGAGGAGAGC
GTCCGAACGTTTGGTAATACCCCTTGGTTTTGTTGAAGCTCGTGCGCGTT
TCGTGTTTGCTGGCCGTGGCGCGATGATAGCCTTGAGCAACCAATCACCC
ATGAGTGCCTGAGAAGCTGCTTAGTGAAAGATTCTTCACCCCGCCTTCAA
CTTTCTGCCCCCACCCCGCTACTACATCTCATCTGAGGTGCGGGTCCGTT
TGTCTCTTAAGTCAACAACAACAGGTATCGCGGGAGTGCAAGACAACCAA
GACAACAAAGTCTCAGGGAGGCGACCACAAGCACCCCCCCCCCCCCCTCC
CCCTCCCCCTCCCCACTAACCCCTGACACCGGTTTCGCTGTGTATTCACT
CCCGTTCCTCCTCGCTACTATAACCCTGGCAGCTCGGAAGGCTTCGACAC
TGCATAGGCGAGGCCTGGCACGGCTTGGACGTCCCCTCTTCCGCTGCGGC
TTCGGCCAGGGGCGCCGCGGAGGGGGAGGGTGTACTGTGGTCGTCGTCTT
CCGCTGCGTCCCCCCCGCTGAGGGACAAGGACAGCATGTTGACCTCGCAG
CAGGGTGGTGACGGAGGGGCCTCGTTTCTGTCGGAGTGGGCGAATGCCGT
TGACGAGGAGGCCTTGGCTTCTAGCCGCAGGTGACAACCGATCGACCAAC
CAACCCTGACGAGCATCTTCGGTCGTGCGTGTCGTGGGGCAGTGGGAATT
ATTTTGCTGAACCAAGGTGTTTGCTTTGGGGCAGGGGAAGAGGGGGTGAA
AGAGAGAATAGTCCCACGTGCGGCGCGTCCATTGCCTTTTTTTGTGCTTT
GCTCTTTCTGCGATGACACCGGTGTTTTCACGTACCCGCTGGTGCGCGTT
GTGCCATGTACGGCGCGTGTGTGCTGTGTTGCAGGAGCATGTTGGCCTCG
GAGCTCCTGCGGAAGGCCGTGCGTCTGCTCAAGCAGAAGCTGCAACAACG
CCCCAACACCCACCTCGGTAAGCTAGCTTTCGCATCTTCGGGACAGTTCC
CATTGGACAGTGCGGCTTTTTTTTTTTCAAGCATGGCTCTCGCTGTTGTC
GAGTTTTGGCGACTGCGCACGTGAAAAAGTTATTGATAATCGTGCAGCTG
CCGAAACTGAGAGAACCAATCCGACACAAACGTCAGTCAACAGCAGCAGC
CGTTGCGGTAGCTACAGCAGCAGCAGTGGCAATCTCAACGCCGACTGCTT
GAAGTTCCGCTTTGGGCATAGATGGTGCACATCAACACACTCATTATTCC
TTCTCTCGTGGATGGTTCCGACGCGAGGCGTCCCGCTCACTCTTCAATCC
GAAGGCTTGACATGGGACGTTGTTTCTTGTGTTTTTGCGCGGTGCGCTTC
CACCGTAGTGGGCGCCAAAACATCATTTGTTCGGCTTGATTGAAACCATT
GACATTGATGTTTCTGGACGGGGGTCGACCAGTAGCGATCAGCTTTGTGC
CTGGTGAGGAACGCTTGAGCGCAACAGGGCCAGAAAAAATAGTTGTTCTT
CCTGGCGGGATGTATGCACGTGTTGACCGCTCTCCAACTCACCTATTTCG
TGTCGCTAGTGGAGGCCGGTTGTCTTGAAGGGATTGAAGGACACCGCTCT
TCGTGTTGAACTGTCTCTCAGAATCGCTCAAGAATTATCGCGGCTACCGC
TGCGGTTTTGTGTTGATGTATGGATACACGCGTTTGTTGCCGTGTCATGG
GAAATGTTTCGGTTTGATTTCCTTCCATGTTTTTGTTCACGCTTCGTGAT
TTTCTTTTGCATCATGACTTGAACGAGGTATTTCGTGTCTGCAGTATTCT
GTTGCGTCCATCTGTGGTAGTAATCTTCGGTTTGTATACACTACCTTTGG
GTGTCTTTCTCGCGCCTTGTTTGCCATCGACGAACTCCTCAATGACTCTG
TCCATCTCCAGTACAGTCTTCGATTTGAATTGACTTGGGGGCATGTGTCG
TGCAATCTCTTGCATGTCGTCGGGACGCACCCCTCAATGTCGCACGCTTG
AACTACCCACAAACGCTGATCGCTCGTCTCAGCCTTGCACCTGAAGCGGC
TCAAGCTGGAGCTGTGGCGCGACGAGAGTAACACCCCGTTCCTCCGGGCG
GAAGTGCGGCGGGTCACCGCCGATGTGATGGTGTACGACGATTCCTCGGG
AAGCGTCGACCTACAGGTATGTTTACAGATACCCGTAGGCGGCGCAAGAT
GCCACCCCCCCCTCTAGAATAATTTTAAAAGCTCCATTTCTCCGTCACAG
CAGAAAGAGAGTGGCGATTCCGAAAATGGCGGCGTCGGAACCGTTAGCTT
GTCGTTAGCGCATAGTTTGGCTTGTACTCATGGTGGAGTAGCTGACCTTT
GGTCCACGGGGTGCGGTATCTTGTGCCACCTACAGTGCTTATCATGAACT
GCATGCGTTTGATACCACACACCTTGGACCGATTGTGGAAGCTCGATTTA
GTCTGCAGCAAGAACAGGGACCGTGCCGAAAGTGGCGGGGTTGGAACCGT
CTCGCTCTATGCAGCGCTTATCGCTTGAGTTTGATATCGTCCTGGTCCTC
AAGGAATCAATCTTTTCGAATCAGTCCGGAGTGTGTGGTGTCTTGTGTTC
AACCGAAGATATGCTGCGTCGGTCGCCTGGCCACGGAAACCCGCCATGTT
TTTCCTTCCGTGCGTTGCTGGCTTTGCGGTGTACCCACCCTCTGTAGCTC
GTATCCAGCAGCAAATGTGGCCGTTTGTGTTGTGACAAATGGTTTGGGCG
GCAGCTCTTTTCACTTCGTTGTAGACAGGTTGGTTATCTCTTTGGTTCAC
TGGCGTATTTCGTATATCCGGCGGTCTTTTTCGTTCTTCGTGCCCCGTGT
ACCTAGATGTTCAAGATCTTTGCCGCATGGTATGACACTTAGCGTGAACT
TTAGCTCTCGTTCTCGACCCGCTGGAGCGCCGCCTCAGCCGTATAGCGCA
GCAAAGACTGTGTTTTGAAGGCGATGCCTGCTTTGACCACCACGATATGT
TCGTGCCCTCCCTATCATCAACAACAAAGCAATTTTGCCAAACAAAAACA
CACATCTTCGGTTATACCCAAATCTACCACAACAGGAGGGTACTGCACGA
TGGAAGTTAGCAACCGCTGGGGCTTCTTGGCGATGTGACTCGTCGATTCG
GTCCCTCCCGTGTTTTTCATGCTTCGCCAGAATGGGCGGTACCCAAACAA
CCCTAACCCAGAATTGTCACCACCTGTCTCTACAGTGAACCAGCAACACG
TACCAGTAACGAAACCCAACTGCGGCTTCATCCCCTCCCTTTCCGTTTCC
TGCGAAGGTCGGGTCTTTGTGGGCGAGCCAGGTGAGAGGGTGTGGCTACA
GCACGGCAGAAGCGGCGGCTGCTGCTGCTGCAGCGGAGCAACTCACGGGA
CCACCCTCGACACCCCTGTCGCCGACACAAACGGGCAGACGGGGCAAGAA
GACACGAGGCCTCGCAGCGGCAGCGGCCCAAGAAGAAGCAGAAGAACGCG
GCGCCTCCGACTGGTGGCGCGGCGGGGAAGGGGGCCCCGCGGATGCGGCA
AGAGCGGGCCAGCAGACCCTCATGGCCCTTGAAGTCGTGAAGCCGCTCAT
GCGCCAGGACCTGGAGCGGCTGTCGGACCAGGCGAGTCGCGCGGGCGAGA
GGCATTTCGTTCTTGTTTCGTGCGTCTAAATGTTTGTGAATGTGGTTGGA
TTGCCGGGGGCCGAGATATAATCAAGTGTGATGCCTGGGACTCTGCGCTG
GTTTTGTCGGTGTCCGTCTGCTGTCTGATCGTGAACGGTTCGAATGGCAG
CCAAGAACGACCGAAGCGCACCAGGACTTGTTGGGAGGAAACGACCAACC
AATATCATGTTCAATGGTTCCGGCAGAACTATCCTCCCTTCTCTGCGGAA
AGGGATGATATCGATAGGACATGTAGGACGGGGAAAACATTTTTGAGCCT
CCTTTGGCAGAGTAGGAAGGAACGATTGGTCGTCGGTGATTGCTCCTGTT
GGATCAAAACTCCGTCCTCTCGAGGAAGCGTGGTCGATGTTCTAACACCT
TGTACCGTGCCAAACATGAGTACGCCCCCTCCCCGAACCATTTTCCAACT
CCGCCTGTGGTTGACGGCGTGATCTCATGTGTGCAAATATCGCCTGGTCC
AATACAGGGGAATCTGCGGGGCTGGTCTCCGCGAGAAGTTACTGTGCACG
TGCAAATACAACTGGGGTCTCCCATCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8453:1175..6553-

>mRNA_Ecto-sp13_S_contig8453.19834.1 ID=mRNA_Ecto-sp13_S_contig8453.19834.1|Name=mRNA_Ecto-sp13_S_contig8453.19834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8453:1175..6553- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCAAGGCCACAAGGAGTAGCGCGGGGGCGACGGGGAATCCAGACTG
GGGGAGTGGCCGGCGGAGTTCCGCCGCAGATGGCGGTGGCGTAGCGGAGG
GGATGGAGGACGATCCGGTGGCCCCGGGGAGCAGCCACCGCAGGAATTCG
CGGGGTATGGGAGCGCGGGTGTTCATGCGCCCACCTCCCACGGTGGCGAG
CTCGTGGGCAACGCAACGCCAGGCCGACTGGGAAACCTTGGAGGGGGTGA
AAGAGAGAATAGTCCCACGTGCGGCGCGTCCATTGCCTTTTTTTGTGCTT
TGCTCTTTCTGCGATGACACCGGTGTTTTCACGTACCCGCTGGTGCGCGT
TGTGCCATGTACGGCGCGTGTGTGCTGTGTTGCAGGAGCATGTTGGCCTC
GGAGCTCCTGCGGAAGGCCGTGCGTCTGCTCAAGCAGAAGCTGCAACAAC
GCCCCAACACCCACCTCGCCTTGCACCTGA
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