prot_Ecto-sp13_S_contig8453.19834.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8453.19834.1
Unique Nameprot_Ecto-sp13_S_contig8453.19834.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length160
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8453.19834.1 vs. uniprot
Match: D7G7J9_ECTSI (Apt1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J9_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.250e-44
Identity = 98/135 (72.59%), Postives = 98/135 (72.59%), Query Frame = 0 
Query:    1 MLKATRSSAGATGNPDWGSGRRSSAADGGGVAEGMEDDPVAPGSSHRRNSRGMGARVFMRPPPTVASSWATQRQADWETLEG---VKERIVPRAARPLPFFVLCSFCDDTGVFTYPLVRVVPCT------ARVCC 126
            MLKAT SS GATGN DWGSGRRSSAADGGGVAEGMEDDPVAPGSSH RN RGM AR FMRPPPTVASSWATQRQADWETLEG   VKERIVPRAAR LPF      C      T   VR   C       ARV C
Sbjct:  207 MLKATGSSTGATGNQDWGSGRRSSAADGGGVAEGMEDDPVAPGSSHGRNWRGMRARAFMRPPPTVASSWATQRQADWETLEGKRWVKERIVPRAARLLPFL-----CFALSAMTPVFVRTRWCALCHLRRARVLC 336
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BLAST of mRNA_Ecto-sp13_S_contig8453.19834.1 vs. uniprot
Match: A0A6H5KUC4_9PHAE (Apt1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC4_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.960e-38
Identity = 76/81 (93.83%), Postives = 76/81 (93.83%), Query Frame = 0 
Query:    1 MLKATRSSAGATGNPDWGSGRRSSAADGGGVAEGMEDDPVAPGSSHRRNSRGMGARVFMRPPPTVASSWATQRQADWETLE 81
            MLKATRSSAGATGN DWGSGRRSSAADGGGVAEGMEDDPVAPGSSH RN RGMGAR FMRPP TVASSWATQRQADWETLE
Sbjct:  450 MLKATRSSAGATGNTDWGSGRRSSAADGGGVAEGMEDDPVAPGSSHGRNWRGMGARAFMRPPTTVASSWATQRQADWETLE 530
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8453.19834.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7J9_ECTSI1.250e-4472.59Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUC4_9PHAE3.960e-3893.83Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8453contigEcto-sp13_S_contig8453:3360..5837 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8453.19834.1mRNA_Ecto-sp13_S_contig8453.19834.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8453 1175..6553 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8453.19834.1 ID=prot_Ecto-sp13_S_contig8453.19834.1|Name=mRNA_Ecto-sp13_S_contig8453.19834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
MLKATRSSAGATGNPDWGSGRRSSAADGGGVAEGMEDDPVAPGSSHRRNS
RGMGARVFMRPPPTVASSWATQRQADWETLEGVKERIVPRAARPLPFFVL
CSFCDDTGVFTYPLVRVVPCTARVCCVAGACWPRSSCGRPCVCSSRSCNN
APTPTSPCT*
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