mRNA_Ecto-sp13_S_contig12397.1983.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12397.1983.1
Unique NamemRNA_Ecto-sp13_S_contig12397.1983.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12397.1983.1 vs. uniprot
Match: A0A6H5KHB5_9PHAE (FGE-sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB5_9PHAE)

HSP 1 Score: 414 bits (1065), Expect = 8.920e-143
Identity = 209/219 (95.43%), Postives = 213/219 (97.26%), Query Frame = 1
Query:    4 CARIVLRALDGVLPAGGAHVVEVGCGAGGGSFELSKGVGKVVALEANKSLIDTASKMARESRVTVTYPSGGARSVAREVSLDAEANPERITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIVKENGGVVVVVSAYEWNEDVTPEGAWLGGYLDKDGNEVPSIQGLARGLGEDFKLVHVERVPCMRPLTDRTFEYASAEATVWRRD 660
            CARIVLRALDGVLPAG AHVVEVGCGAGGGSFELSK VGKVVALEANKSLIDTASKMARESR+TVTYPSGGARSVAREV LD EANPERITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIV+ENGGV VVVSAYEWNEDVTPEGAW+GGYLD DGNEVPSIQGL+RGLGEDFKLVHVERVPCMRPLTDRTFEYASAEATVWRRD
Sbjct:  218 CARIVLRALDGVLPAGEAHVVEVGCGAGGGSFELSKVVGKVVALEANKSLIDTASKMARESRLTVTYPSGGARSVAREVYLDGEANPERITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIVRENGGVAVVVSAYEWNEDVTPEGAWVGGYLDDDGNEVPSIQGLSRGLGEDFKLVHVERVPCMRPLTDRTFEYASAEATVWRRD 436          
BLAST of mRNA_Ecto-sp13_S_contig12397.1983.1 vs. uniprot
Match: D7FTN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN7_ECTSI)

HSP 1 Score: 411 bits (1057), Expect = 4.320e-136
Identity = 206/220 (93.64%), Postives = 214/220 (97.27%), Query Frame = 1
Query:    1 RCARIVLRALDGVLPAGGAHVVEVGCGAGGGSFELSKGVGKVVALEANKSLIDTASKMARESRVTVTYPSGGARSVAREVSLDAEANPERITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIVKENGGVVVVVSAYEWNEDVTPEGAWLGGYLDKDGNEVPSIQGLARGLGEDFKLVHVERVPCMRPLTDRTFEYASAEATVWRRD 660
            RCA+IVLRALDGVLPAG AHVVEVGCGAGG SFELSKGVG+VVALEANKSLIDTASKMA ESR+TV YPSGGARSVAREVSLD EANP+RITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIV+ENGGVVVVVSAYEWNEDVTPE AWLGGYLD+DGNEVPSIQGL+RGLG+DFKLVHVERVPCMRPLTDRTFEYASAEATVWRRD
Sbjct:  647 RCAKIVLRALDGVLPAGEAHVVEVGCGAGGASFELSKGVGRVVALEANKSLIDTASKMATESRLTVAYPSGGARSVAREVSLDGEANPDRITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIVRENGGVVVVVSAYEWNEDVTPERAWLGGYLDEDGNEVPSIQGLSRGLGDDFKLVHVERVPCMRPLTDRTFEYASAEATVWRRD 866          
BLAST of mRNA_Ecto-sp13_S_contig12397.1983.1 vs. uniprot
Match: F2USG2_SALR5 (Generic methyltransferase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2USG2_SALR5)

HSP 1 Score: 137 bits (345), Expect = 1.290e-33
Identity = 75/199 (37.69%), Postives = 110/199 (55.28%), Query Frame = 1
Query:   58 HVVEVGCGAGGGSFELSKGVGKVVALEANKSLIDTASKMARESRVTVTYPSGGARSVAREVSLDAEANPERITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIVKENGGVVVVVSAYEWNEDVTPEGAWLGGYLDKDGNEVPSIQGLARGLGEDFKLVHVERVPCMRPLTDRTFEYASAEATVWR 654
             V+++GCG GG +F L++    V+ ++ + S ID A ++  E  +       G       V L    +P R+ FKQ D MC+P       A L  + +D + SP  LL R+GGARG+V+  GG++V+ S Y W E  TP+  W+GG+   +GN V S+ GL   LGE+F+L+   +VP       R FEY  +EATVWR
Sbjct:  669 RVLDIGCGVGGTTFALARAFESVLGVDISASFIDAAQQLKEEGSLPYFIREEGDIKEEAVVGLPQGVDPARVEFKQMDAMCIPPDTGSFSAVLAANVLDRLSSPGTLLSRLGGARGLVRP-GGILVLSSPYTWMEQYTPKDLWIGGHETPEGN-VRSLDGLKAALGENFELLRTTQVPLAIREHARKFEYVISEATVWR 865          
BLAST of mRNA_Ecto-sp13_S_contig12397.1983.1 vs. uniprot
Match: A0A846FYT2_9CYAN (5-histidylcysteine sulfoxide synthase n=1 Tax=Okeania sp. SIO2B3 TaxID=2607784 RepID=A0A846FYT2_9CYAN)

HSP 1 Score: 123 bits (309), Expect = 8.160e-29
Identity = 69/200 (34.50%), Postives = 110/200 (55.00%), Query Frame = 1
Query:   58 HVVEVGCGAGGGSFELSKGVGKVVALEANKSLIDTASKMARESRVTVTYPSGGARSVAREVSLDAEANPERITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIVKENGGVVVVVSAYEWNEDVTPEGAWLGGYLDKDGNEVPSIQGLARGLGEDFKLVHVERVPCMRPLTDRTFEYASAEATVWRR 657
              ++VGC  GG +FEL++G   V+ ++ + + ID A  + RE R+  + P  G  +   EV L  + +  R+TF++ D   LP  L G D  L  + I  +PSP   LGR+ GARG+V+  GG++V+ + + W+E  TP  AWLGG+   DG +  S   L   L  DF+L+  + +P +     R F+Y     ++W+R
Sbjct:  570 RAIDVGCSVGGSTFELARGFQSVLGIDLSATFIDAAKTLHREGRLAYSRPDEGENTSQAEVCLPEDPDRSRVTFRRGDACALPPELVGFDVVLAANLICRLPSPRAFLGRLCGARGLVRP-GGLLVLATPFTWDERFTPRDAWLGGH---DGED--SFTVLQAELKGDFELLETQDMPFLIREHARKFQYVVTLVSLWKR 763          
BLAST of mRNA_Ecto-sp13_S_contig12397.1983.1 vs. uniprot
Match: A9UT82_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UT82_MONBE)

HSP 1 Score: 122 bits (306), Expect = 2.120e-28
Identity = 76/206 (36.89%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   58 HVVEVGCGAGGGSFELSKGVGKVVALEANKSLIDTASKMARESRVTVTYPSGGARSVARE---VSLDAEANPE----RITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIVKENGGVVVVVSAYEWNEDVTPEGAWLGGYLDKDGNEVPSIQGLARGLGEDFKLVHVERVPCMRPLTDRTFEYASAEATVWR 654
              +++GC  GG +F L++   +V+  + N + I+TA ++           +G  +S  RE   + +   A P     R++FK  D +CLP  L   DA ++ + +D + SP  LLGR+GGARG+VK  GG++ V S + W E  TP+  WLGG    DG EV SI  L   L ++F+L+ V  +P M     R FEY  A ATVWR
Sbjct:  629 RALDIGCNVGGVAFALAERFPEVLGYDINSNAIETAQEI---------QETGSLQSYVREEGDIKMHFTATPSHQSSRVSFKHGDALCLPPDLGNFDAVVVANVLDRLSSPGSLLGRLGGARGLVKP-GGLLFVSSPFSWMERYTPKDLWLGGRETFDG-EVSSIDTLHASLNDNFELLEVMDMPFMLREHARKFEYVKAYATVWR 823          
BLAST of mRNA_Ecto-sp13_S_contig12397.1983.1 vs. uniprot
Match: A0A7S3GVD8_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVD8_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.890e-27
Identity = 72/183 (39.34%), Postives = 107/183 (58.47%), Query Frame = 1
Query:   40 LPAGGAHVVEVGCGAGGGSFELSKGVGK---VVALEANKSLIDTASKMARESRVTVTYPSGGARSVAREVSLDAEANPE-RITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIVKENGGVVVVVSAYEWNEDVTPEGAWLGGYLDK--DGN--EVPSIQGLARGLGEDF 564
            LP   AH++EVGCG GG ++ L+   G+   ++ ++ +   IDTA K+ +   +T T    G  +    V+   +A  + +I F+  DPMCLPA +   D  ++H  +D + SPN LLGR+GG RG+VK +GG++ V SAY+W E+ TP+  WLGGY  K  DG   +V S + L   L  DF
Sbjct:  726 LPLNQAHLLEVGCGPGGLTYSLAAQCGENASIIGVDHSAHSIDTAKKLLQGESLTCTLSGEGTFTSTLTVAAPVKAIKKCQIDFRMSDPMCLPAEMQDFDLVVLHDVLDTLASPNSLLGRVGGLRGLVK-SGGLLAVSSAYQWREECTPKELWLGGYEIKNTDGTTIKVKSEETLVERLNSDF 907          
BLAST of mRNA_Ecto-sp13_S_contig12397.1983.1 vs. uniprot
Match: UPI0019C6AA6A (5-histidylcysteine sulfoxide synthase n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI0019C6AA6A)

HSP 1 Score: 118 bits (296), Expect = 4.590e-27
Identity = 71/221 (32.13%), Postives = 114/221 (51.58%), Query Frame = 1
Query:    1 RCARIVLRALDGVLPAG--GAHVVEVGCGAGGGSFELSKGVGKVVALEANKSLIDTASKMARESRVTVTYPSGGARSVAREVSLDAEANPERITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIVKENGGVVVVVSAYEWNEDVTPEGAWLGGYLDKDGNEVPSIQGLARGLGEDFKLVHVERVPCMRPLTDRTFEYASAEATVWRR 657
            RCA +V    D  L AG      ++VGC  G  +FEL++    V+ ++ +   I+ A+ + R  ++       G    A   ++D   +  R++F+Q D   LP    G DA L+ + I  +PSPN LL R+GG RG+V+  GG++V+ + + W E  +P   WLGGY+  +G  V S   L   L ++F+LV    +P +     R ++Y     TVW+R
Sbjct:  596 RCADLVR---DAALAAGITSGRALDVGCAVGRSTFELARTFESVIGVDLSAGFIEAANTLQRNGQMPYFRKDEGDLGAALTATIDPAIDRSRLSFRQADACSLPPDFVGFDAVLMANLICRLPSPNSLLSRLGGPRGLVRP-GGILVMTTPFSWLEQFSPREVWLGGYI-ANGEPVWSKDTLHAALADEFELVSAHDMPLVIREHARKYQYIVTYTTVWKR 811          
BLAST of mRNA_Ecto-sp13_S_contig12397.1983.1 vs. uniprot
Match: A0A3N6PHY8_9CYAN (5-histidylcysteine sulfoxide synthase n=6 Tax=Okeania TaxID=1458928 RepID=A0A3N6PHY8_9CYAN)

HSP 1 Score: 117 bits (292), Expect = 1.540e-26
Identity = 65/200 (32.50%), Postives = 111/200 (55.50%), Query Frame = 1
Query:   58 HVVEVGCGAGGGSFELSKGVGKVVALEANKSLIDTASKMARESRVTVTYPSGGARSVAREVSLDAEANPERITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIVKENGGVVVVVSAYEWNEDVTPEGAWLGGYLDKDGNEVPSIQGLARGLGEDFKLVHVERVPCMRPLTDRTFEYASAEATVWRR 657
              ++VGC  GG +FEL++G   V+ ++ + + I+ A  + R+ R+  +    G  +   EV L  + +   + F++ D   LP  L G D  L  + I  +PSP G LGR+ GARG+V+  GG++V+ + + W+E  TP  AWLGG+   DG +  S+  L   L +DF+L+  + +P +     R F+Y  +  ++W+R
Sbjct:  570 RAIDVGCSVGGSTFELARGCESVLGIDLSVTFIEAAETLRRKGRLAYSRRDEGENTSQAEVCLPEDLDRRIVNFRRADACGLPPELVGFDVVLAANLICRLPSPRGFLGRLCGARGLVRP-GGLLVLATPFTWDERFTPRDAWLGGH---DGED--SLTVLQGELNQDFELLDTQDMPFLIREHARKFQYVVSLVSLWKR 763          
BLAST of mRNA_Ecto-sp13_S_contig12397.1983.1 vs. uniprot
Match: A0A482RUX6_9ARCH (Methyltransferase domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUX6_9ARCH)

HSP 1 Score: 103 bits (256), Expect = 1.260e-22
Identity = 69/206 (33.50%), Postives = 109/206 (52.91%), Query Frame = 1
Query:   58 HVVEVGCGAGGGSFELSKGVGKVVALEANKSLI----DTASKMARESRVT--VTYPSGGARSVAREVSLDAEANPERITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIVKENGGVVVVVSAYEWNEDVTPEGAWLGGYLDKDGNEVPSIQGLARGLGEDFKLVHVERVPCMRPLTDRTFEYASAEATVWRR 657
             V+EVGC  GG S +L+     V+ ++ N   +    D  +++  +++ T  VT  S G +   + V+L        + F+  DPMCLPA +   D  +++  +D + SPN LLGR+GG RG+VK  GG +VV+SAY+W+E+ TP+  WLG      GN    +  +AR L  DF  V   ++P +   T +  +      TV+ R
Sbjct:  131 RVLEVGCEQGGLSLQLASVSKSVIGVDHNMLAVSFAKDLVARICSDTKPTLSVTLRSEGGQGAEQVVALPTLQEGGMVDFRCADPMCLPAEMMDFDVVVVNDVLDQLASPNALLGRLGGVRGLVK-GGGHLVVISAYQWSEEKTPKTLWLG----DSGNSEKEL--IAR-LASDFHHVKSVQLPLVWHETQQQLKGKVVTMTVFAR 328          
BLAST of mRNA_Ecto-sp13_S_contig12397.1983.1 vs. uniprot
Match: A0A6F9DGF1_9ASCI (Uncharacterized protein LOC100180046 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DGF1_9ASCI)

HSP 1 Score: 92.8 bits (229), Expect = 6.310e-19
Identity = 55/200 (27.50%), Postives = 95/200 (47.50%), Query Frame = 1
Query:   58 HVVEVGCGAGGGSFELSKGVGKVVALEANKSLIDTASKMARESRVTVTYPSGGARSVAREVSLDAEANPERITFKQCDPMCLPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIVKENGGVVVVVSAYEWNEDVTPEGAWLGGYLDKDGNEVPSIQGLARGLGEDFKLVHVERVPCMRPLTDRTFEYASAEATVWRR 657
              +++GC  G  SFEL++   +V+ ++ +   + T   + +   +    P  G  +      + ++ +  R  F+  D   LP  L      L  + I  +PSP   L R+G     + E GG+ V+ S Y + +  TP+  WLGGY+DK+G EV +I  + R L   F LV    +P +   T R  ++  A  ++W+R
Sbjct:  107 RALDIGCAVGRASFELAREFQEVIGIDYSHGFVKTCDVLKQAGSMEYEAPVEGDLTEKHTAVVPSDIDRTRCHFQTGDACNLPLNLGKFGCVLAANLICRLPSPTDFLLRLGN----LVETGGICVITSPYTFMDTFTPKNKWLGGYVDKNGQEVRAIDTMKRVLSPQFDLVDCIDLPFLIRETARKHQWTVAHVSIWKR 302          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12397.1983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHB5_9PHAE8.920e-14395.43FGE-sulfatase domain-containing protein n=1 Tax=Ec... [more]
D7FTN7_ECTSI4.320e-13693.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F2USG2_SALR51.290e-3337.69Generic methyltransferase n=1 Tax=Salpingoeca rose... [more]
A0A846FYT2_9CYAN8.160e-2934.505-histidylcysteine sulfoxide synthase n=1 Tax=Okea... [more]
A9UT82_MONBE2.120e-2836.89Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7S3GVD8_9STRA1.890e-2739.34Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
UPI0019C6AA6A4.590e-2732.135-histidylcysteine sulfoxide synthase n=1 Tax=Cand... [more]
A0A3N6PHY8_9CYAN1.540e-2632.505-histidylcysteine sulfoxide synthase n=6 Tax=Okea... [more]
A0A482RUX6_9ARCH1.260e-2233.50Methyltransferase domain-containing protein (Fragm... [more]
A0A6F9DGF1_9ASCI6.310e-1927.50Uncharacterized protein LOC100180046 n=1 Tax=Phall... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12397contigEcto-sp13_S_contig12397:14..2503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score414.5
Seed ortholog evalue3.2e-113
Seed eggNOG ortholog2880.D7FTN7
Model size663
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.dimethylhistidine N-methyltransferase activity
EggNOG OGs2QS9T@2759,COG4301@1
Cds size663
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462659.313641-CDS-Ecto-sp13_S_contig12397:13..1351681462659.313641-CDS-Ecto-sp13_S_contig12397:13..135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12397 14..135 +
1681462659.324036-CDS-Ecto-sp13_S_contig12397:705..9021681462659.324036-CDS-Ecto-sp13_S_contig12397:705..902Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12397 706..902 +
1681462659.3390863-CDS-Ecto-sp13_S_contig12397:1447..16471681462659.3390863-CDS-Ecto-sp13_S_contig12397:1447..1647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12397 1448..1647 +
1681462659.3469296-CDS-Ecto-sp13_S_contig12397:2359..25031681462659.3469296-CDS-Ecto-sp13_S_contig12397:2359..2503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12397 2360..2503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12397.1983.1prot_Ecto-sp13_S_contig12397.1983.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12397 14..2503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12397.1983.1

>prot_Ecto-sp13_S_contig12397.1983.1 ID=prot_Ecto-sp13_S_contig12397.1983.1|Name=mRNA_Ecto-sp13_S_contig12397.1983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
RCARIVLRALDGVLPAGGAHVVEVGCGAGGGSFELSKGVGKVVALEANKS
LIDTASKMARESRVTVTYPSGGARSVAREVSLDAEANPERITFKQCDPMC
LPAGLAGLDAALIHSTIDAIPSPNGLLGRMGGARGIVKENGGVVVVVSAY
EWNEDVTPEGAWLGGYLDKDGNEVPSIQGLARGLGEDFKLVHVERVPCMR
PLTDRTFEYASAEATVWRRD*
back to top

mRNA from alignment at Ecto-sp13_S_contig12397:14..2503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12397.1983.1 ID=mRNA_Ecto-sp13_S_contig12397.1983.1|Name=mRNA_Ecto-sp13_S_contig12397.1983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2490bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12397:14..2503+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCGCGAGAATCGTCCTGCGCGCCCTCGACGGCGTGCTCCCAGCTGG AGGAGCTCATGTGGTCGAAGTCGGATGCGGCGCGGGCGGAGGGTCGTTTG AGCTCTCCAAGGGTGTAGGTAAGTCACTCCCCCGCGGCCGGGCCATCAGA CTCGTGGAACGACTCACGACATGGTGCATTTCTCCACGGTTCCGTGGAAC GACTCATGATGTGGTACATTCCACCGCCGTTCCGTGCTTGGATTTCGTTC GGCGGGTGTGTACACGCACGAATGTGGCGGACTTGCCGCTATTGTTTTTG CTTGTGCTCGTCGGGTGCGATAGTGGATTTGCTCTCGTCTTTCGCGAGGC ATGCGCCCCATCGCCTCTGCCGCTGTGACACGAACGCCTGTGCATGCATG TTGAAACTACCTTCTTGTGTACAGCAGAACGGAACCGGGCACCGCCATGC CGATGCGAACCACCTTGGTGAAGTGTTTCGAAGTCCACCATTCCACCATA CCGCGGCCCTTCCGGCTGACCTTCTGCGGAAAGAAACAAACCAAACTGTG GGCCCCCCCCAAAAGCCTTGCATTTTCTCCCTTCCCCACACGTCGCGCCT GAATGTGCCCCTCCTGGCTAACCCTAACCCAAACCCTATTCCTAACCTTA ACCCTTAACCCGATGGGACACCACCCACCACCACACAGGGAGAGTCGTAG CGCTGGAGGCCAACAAGAGTCTCATCGACACCGCGTCGAAGATGGCGAGG GAATCCAGGGTGACCGTCACCTACCCATCGGGGGGTGCGAGGAGCGTGGC TCGGGAAGTCTCTCTGGACGCGGAGGCCAACCCGGAGAGGATAACGTTCA AGCAGTGCGACCCGATGTGCCTCCCGGCAGGCTTGGCTGGTGAGGAGGTT GTCGCTTCGGGGGGGCTGGGATTGGTTTAGCTTTTGGGTTTTGGTCGGGC TGGGTTGGGGAGGTGATGGTGTGTCCGCCGCGGAATGCCTACTGCGCACG GCTTGGTTTTTGGTGTAGACTTCACCCGTCCTCCTGTGGGAGTTGTGTTA TCACCACGGTGGTTGTATCGCGGTCTGGAGGCGGAGGTGTGCCGCATGCA CTGACTACACGGTTTACATACACGCTTTGCGGCAACGCGATTGACAGTAT ACAGCTTTCACTTCTCACTAGAATGCGCAGGACTCGGGTCAGCAGTCGTG GCTCACACATTCCAGCATCGTGATATCTCGGAAGTACATACAGCAGTAAT ATCCCGCTGAGCAGCACCATGTTGAGTGCACATGTCATTTAATTACCACG ACCCTACGACGGTCTTCACAAACAGTACGGTAGTCTGCCGAAGCGCTCTT TCGACTGAGCTCAGGCCTGGCGGCTCCCGCTTTCACGGTCCGTCCTTCCG CTCCCCGCCGCAACGATGGCGAACGACGACGCAGGGCTAGACGCGGCCCT AATCCACAGCACGATCGACGCCATCCCTTCCCCGAACGGGCTCCTCGGCC GGATGGGAGGGGCCAGGGGCATCGTGAAGGAGAACGGGGGCGTGGTGGTT GTGGTGTCAGCGTACGAGTGGAATGAGGACGTGACCCCAGAGGGGGCGTG GCTGGGCGGTTACCTTGACAAGGACGGCAACGAGGTTCGTTCGTTCATGT CGCGAGGAGGGAGTACGGCATATTCGGAATATATACGTACTTGTCGAAGC AAAGCAGCCAAGTAAAGATAATAATTCGAAGATAATAATACTAAGTATGA GTTGGGGGTTCGCAACGAGGAAGCAAACACGCATCATTGCTTGTATACAT ACAAGTGAAGAATTATTCAGATTATTCCCGAGAAATTAGAAGGGTGGTTC AGAAGCACGGCTGGCTCAACGGTGGATCCTGCGCTTCATAGTACCTTTGT GTGGCAATCTACGCTCGACCGAACCAAGTAAACGACCCTCCGTCGTCGGA AGTCGAAGATCCTTTTACGTCGGCCCTCGAGCCGTACGGCCGTCGCACCG ATGATTTCCGGGCTCGGGCTGTGCCTCACACAGTAGGATAGGATACTACT TAACGTGGATGAGCTTGTAATGTGCGTTAGCTAAGTGATGCGGCTATTGA GGAGGCTCCGGATAAAGAATACGGCGAGCCTCGGCATTTTCGTCTTGCAG TTTTTTAATTGTTTGTCATATCCTACCTATTTACGTATTCTGGATGCCGG TCTTTACGCCTATGGTGGAATGAATTCCTGGATTCACTGCCAGCCGGGGT CTCAACACAGGAGGTGCCTTGAGGTGGCCAGTGATAATTCTTGCGAAAAA CGACGAAACTTGCCGACGGAAACACGCCCCGCACCCACTCACACAGGTCC CCTCGATCCAGGGGCTGGCGAGAGGGCTGGGCGAGGACTTCAAACTTGTC CACGTGGAAAGGGTGCCGTGCATGCGGCCGCTGACAGACCGCACTTTCGA GTATGCGTCCGCGGAGGCAACGGTGTGGCGCAGAGACTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12397:14..2503+

>mRNA_Ecto-sp13_S_contig12397.1983.1 ID=mRNA_Ecto-sp13_S_contig12397.1983.1|Name=mRNA_Ecto-sp13_S_contig12397.1983.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12397:14..2503+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCGCGAGAATCGTCCTGCGCGCCCTCGACGGCGTGCTCCCAGCTGG
AGGAGCTCATGTGGTCGAAGTCGGATGCGGCGCGGGCGGAGGGTCGTTTG
AGCTCTCCAAGGGTGTAGGTAAAGTCGTAGCGCTGGAGGCCAACAAGAGT
CTCATCGACACCGCGTCGAAGATGGCGAGGGAATCCAGGGTGACCGTCAC
CTACCCATCGGGGGGTGCGAGGAGCGTGGCTCGGGAAGTCTCTCTGGACG
CGGAGGCCAACCCGGAGAGGATAACGTTCAAGCAGTGCGACCCGATGTGC
CTCCCGGCAGGCTTGGCTGGGCTAGACGCGGCCCTAATCCACAGCACGAT
CGACGCCATCCCTTCCCCGAACGGGCTCCTCGGCCGGATGGGAGGGGCCA
GGGGCATCGTGAAGGAGAACGGGGGCGTGGTGGTTGTGGTGTCAGCGTAC
GAGTGGAATGAGGACGTGACCCCAGAGGGGGCGTGGCTGGGCGGTTACCT
TGACAAGGACGGCAACGAGGTCCCCTCGATCCAGGGGCTGGCGAGAGGGC
TGGGCGAGGACTTCAAACTTGTCCACGTGGAAAGGGTGCCGTGCATGCGG
CCGCTGACAGACCGCACTTTCGAGTATGCGTCCGCGGAGGCAACGGTGTG
GCGCAGAGACTGA
back to top